TAIR: a resource for integrated Arabidopsis data

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Functional & Integrative Genomics

• Publication date

  2002-10-03

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1007/s10142-002-0077-zPMID 12444417
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The MetaCyc Database

  2002cited by this paper
• The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant

  2001cited by this paper
• Seed and molecular resources for Arabidopsis.

  2000cited by this paper
• Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

  2000cited by this paper
• InterPro-an integrated documentation resource for protein families, domains and functional sites

  2000cited by this paper
• Bioinformatic resources, challenges, and opportunities using Arabidopsis as a model organism in a post-genomic era.

  2000cited by this paper
• Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.

  2000cited by this paper
• National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them.

  2000cited by this paper
• Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database

  1999cited by this paper
• Arabidopsis thaliana: a model plant for genome analysis.

  1998cited by this paper
• AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative

  1998cited by this paper
• Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines.

  1996cited by this paper
• Recombinant inbred lines for mapping RFLP and phenotypic markers in Arabidopsis thaliana

  1993cited by this paper

• Comprehensive analysis of DOF transcription factors and characterization of PlOBP4 during herbaceous peony bud dormancy

  2026cites this paper
• Pleiotropy and facilitation of local adaptation in the silverleaf sunflower Helianthus argophyllus

  2025cites this paper
• TEA-GCN: Constructing Accurate, Species-comparable, and Explainable Gene Regulatory and Functional Networks via Condition-Specific Ensemble Co-expression

  2025cites this paper
• Genome-wide profiling of GRAS genes in flax (Linum usitatissimum L.) reveals LuGRAS30 as a key regulator of drought stress resistance

  2025cites this paper
• Comprehensive Analysis of the PP2C Gene Family in Grape (Vitis vinifera L.) and Identification of VvPP2C26 and VvPP2C41 as Negative Regulators of Fruit Ripening

  2025cites this paper
• Genome-Wide Study of Plant-Specific PLATZ Transcription Factors and Functional Analysis of OsPLATZ1 in Regulating Caryopsis Development of Rice (Oryza sativa L.)

  2025cites this paper
• Identification of PP2C gene family and its role in stress and adversity based on T2T flax (Linum usitatissimum L.) genome

  2025cites this paper
• Genome analyses provide insights into Engelhardia’s adaptation to East Asia summer monsoon

  2025cites this paper
• LuCSD3 enhances salt stress tolerance in flax: genome-wide profiling and functional validation of the SOD gene family

  2025cites this paper
• Genome-wide comprehensive analysis the molecular phylogenetic evolution, functional divergence and tissue-specific expression of GH3 gene family in Salvia miltiorrhiza, Arabidopsis thaliana, and Oryza sativa

  2025cites this paper
• Comparative Analysis of TALE Gene Family in Gramineae

  2025cites this paper
• An evolutionary dynamics analysis of the plant DEK gene family reveals the role of BnaA02g08940D in drought tolerance.

  2025cites this paper
• Genome-wide identification of BBX gene family and its function in defense of necrotrophic fungus Alternaria sp. in Chrysanthemum

  2025cites this paper
• Genome-Wide Identification of the PLATZ Gene Family and Its Roles in Stress Responses in Flax (Linum usitatissimum L.) Based on the Telomere-to-Telomere Genome

  2025cites this paper
• Regulatory Interactions of Non-Coding RNAs during Maternal-to-Zygotic Transition in Arabidopsis thaliana.

  2025cites this paper
• Genome-Wide Identification, Phylogeny, and Abiotic Stress Response Analysis of OSCA Family Genes in the Alpine Medicinal Herb Notopterygium franchetii

  2025cites this paper
• Cloning of MYB28 Gene from Arabidopsis Thaliana and It’s Over Expression in Agrobacterium Tumefaciens Mediated Genetically Transformed Arabidopsis Thaliana Plant from Vindhya Region of Madhya Pradesh

  2025cites this paper
• Evolution, Gene Duplication, and Expression Pattern Analysis of CrRLK1L Gene Family in Zea mays (L.)

  2024cites this paper
• Genome-Wide Identification of Nucleotide-Binding Site–Leucine-Rich Repeat Gene Family in Cymbidium ensifolium and Expression Profiles in Response to Fusarium Wilt Infection

  2024cites this paper
• Genome-Wide Identification, Characterization, and Expression Profile of PDCB Gene Family in Zea mays L.

  2024cites this paper
• Physcomitrium patens: A Model for Studying the Evolution of Proteins with Lectin Domains in Plants

  2024cites this paper
• Genome-wide identification and mining elite allele variation of the Monoacylglycerol lipase (MAGL) gene family in upland cotton (Gossypium hirsutum L.)

  2024cites this paper
• Whole‐Genome Identification of the Flax Fatty Acid Desaturase Gene Family and Functional Analysis of the LuFAD2.1 Gene Under Cold Stress Conditions

  2024cites this paper
• Comparative analysis of the PAL gene family in nine citruses provides new insights into the stress resistance mechanism of Citrus species

  2024cites this paper
• Genome-Wide Survey of the Potential Function of CrLBDs in Catharanthus roseus MIA Biosynthesis

  2024cites this paper
• Genome-wide analysis of the MADS-box gene family of sea buckthorn (Hippophae rhamnoides ssp. sinensis) and their potential role in floral organ development

  2024cites this paper
• Genome-Wide Identification of the RALF Gene Family and Expression Pattern Analysis in Zea mays (L.) under Abiotic Stresses

  2024cites this paper
• Genome-Wide Comprehensive Identification and In Silico Characterization of Lectin Receptor-Like Kinase Gene Family in Barley (Hordeum vulgare L.)

  2024cites this paper
• Evolutionary origin and gradual accumulation with plant evolution of the LACS family

  2024cites this paper
• Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences

  2023cites this paper
• Deciphering Macromolecular Interactions Involved in Abiotic Stress Signaling: A Review of Bioinformatics Analysis.

  2023cites this paper
• Use of Arabidopsis thaliana as a model to understand specific carcinogenic events: Comparison of the molecular machinery associated with cancer-hallmarks in plants and humans.

  2023cites this paper
• Genome-wide identification of PEBP gene family in pineapple reveal its potential functions in flowering

  2023cites this paper
• Genome-Wide Identification and Expression of the GRAS Gene Family in Oat (Avena sativa L.)

  2023cites this paper
• In silico scanning of structural and functional deleterious nsSNPs in Arabidopsis thaliana’s SOG1 protein, using molecular dynamic simulation approaches

  2023cites this paper
• Single-cell transcriptomic analysis of pea shoot development and cell-type-specific responses to boron deficiency

  2023cites this paper
• Genome-Wide Identification of the Sweet Orange bZIP Gene Family and Analysis of Their Expression in Response to Infection by Penicillium digitatum

  2023cites this paper
• The Arabidopsis Information Resource in 2024

  2023cites this paper
• TeCD: The eccDNA Collection Database for extrachromosomal circular DNA

  2023cites this paper
• Loss of function of SSIIIa and SSIIIb coordinately confers high RS content in cooked rice

  2023cites this paper
• Phylogenomics insights into gene evolution, rapid species diversification, and morphological innovation of the apple tribe (Maleae, Rosaceae).

  2023cites this paper
• Construction of integrative transcriptome to boost systematic exploration of Bougainvillea

  2022cites this paper
• Rapid evolution of pollen and pistil traits as a response to sexual selection in the post-pollination phase of mating.

  2022cites this paper
• The Identification and Characterization of the KNOX Gene Family as an Active Regulator of Leaf Development in Trifolium repens

  2022cites this paper
• Recent Developments and Strategies for the Application of Agrobacterium-Mediated Transformation of Apple Malus × domestica Borkh

  2022cites this paper
• Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes

  2022cites this paper
• SmGDB: genome database of Salvia miltiorrhiza, an important TCM Plant

  2022influential citation
• Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort.

  2022influential citation
• Genome-wide analysis of the VQ motif-containing gene family and expression profiles during phytohormones and abiotic stresses in wheat (Triticum aestivum L.)

  2022cites this paper
• Single‐cell transcriptome atlas reveals developmental trajectories and a novel metabolic pathway of catechin esters in tea leaves

  2022influential citation
• Genome-wide analysis of MADS-box gene family in kiwifruit (Actinidia chinensis var. chinensis) and their potential role in floral sex differentiation

  2022cites this paper
• Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants

  2021cites this paper
• WRKY transcription factors and ethylene signaling modify root growth during the shade avoidance response.

  2021cites this paper
• Norway spruce deploys tissue-specific responses during acclimation to cold.

  2021cites this paper
• Can genetic engineering-based methods for gene function identification be eclipsed by genome editing in plants? A comparison of methodologies

  2021cites this paper
• Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice.

  2021cites this paper
• Integrative lncRNA landscape reveals lncRNA-coding gene networks in the secondary cell wall biosynthesis pathway of moso bamboo (Phyllostachys edulis)

  2021cites this paper
• Identification and Expression Analysis of miR160 and Their Target Genes in Cucumber

  2021cites this paper
• Sulfur deficiency-induced genes affect seed protein accumulation and composition under sulfate deprivation

  2021cites this paper
• Identification, Characterization and Expression Profiles of Dof Transcription Factors in Common Walnut (Juglans Regia L.)

  2021cites this paper
• Non-vernalization requirement in Chinese kale caused by loss of BoFLC and low expressions of its paralogs

  2021cites this paper
• Identification and Expression Analysis of miR160 and Their Target Genes in Cucumber

  2021cites this paper
• Genome-wide identification and characterization of NAC genes in Brassica juncea var. tumida

  2021cites this paper
• Functional specificity, diversity and redundancy of Arabidopsis JAZ family repressors in jasmonate and COI1-regulated growth, development and defense.

  2021cites this paper
• Anno genominis XX: 20 years of Arabidopsis genomics.

  2020cites this paper
• Linked Data Platform for Solanaceae Species

  2020cites this paper
• Lectin Receptor like Kinase

  2020cites this paper
• Metabolomics in plant protection product research and development

  2020cites this paper
• Genome-wide Association Studies of Agronomic Traits Consisting of Field- and Molecular-based Phenotypes

  2020cites this paper
• Genome-wide analysis of evolution and expression profiles of NAC transcription factor gene family in Juglans regia L.

  2020cites this paper
• blkn, a novel Medicago truncatula mutant achieving black nodule phenotype

  2020cites this paper
• Norway spruce deploys tissue specific canonical responses to acclimate to cold

  2020cites this paper
• A Genome-Wide Association Study Revealed Key SNPs/Genes Associated With Salinity Stress Tolerance In Upland Cotton

  2019influential citation
• Variation of gene expression in plants is influenced by gene architecture and structural properties of promoters

  2019cites this paper
• Phylogenetic and Expression Analysis of Mn-CDF Transporters in Pear (Pyrus bretschneideri Rehd.)

  2019cites this paper
• A SWI/SNF subunit regulates chromosomal dissociation of structural maintenance complex 5 during DNA repair in plant cells

  2019cites this paper
• Protein Complex Identification and quantitative complexome by CN-PAGE

  2019cites this paper
• Computational identification of protein-protein interactions in model plant proteomes

  2019cites this paper
• Plant Regulomics: A Data-driven Interface for Retrieving Upstream Regulators from Plant Multi-omics Data.

  2019influential citation
• The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species

  2019cites this paper
• Advancement in Sustainable Agriculture: Computational and Bioinformatics Tools

  2019cites this paper
• Construction of gene causal regulatory networks using microarray data with the coefficient of intrinsic dependence

  2019cites this paper
• 5 The Prediction and Analysis of Inter-and Intra-Species Protein-Protein Interaction

  2018cites this paper
• Computational Methods for Predicting Protein‐Protein Interactions Using Various Protein Features

  2018cites this paper
• Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments

  2018cites this paper
• The Sequenced Angiosperm Genomes and Genome Databases

  2018cites this paper
• How to build a fruit: Transcriptomics of a novel fruit type in the Brassiceae

  2018cites this paper
• Norway spruce deploys canonical and delayed cold acclimation responses in a tissue-specific manner

  2018cites this paper
• LecRKIII.1 and LecRKIII.2 formed homodimers to play physiological functions in Arabidopsis thaliana

  2018cites this paper
• Dissection métabolique de la sénescence foliaire et de la remobilisation des nutriments chez le colza (Brassica napus)

  2018cites this paper
• Identification and Characterization of Salinity Tolerance Genes by Activation Tagging in Arabidopsis

  2018cites this paper
• Characterization of the MAPK Gene Family and PbrMAPK13 Response to Hormone and Temperature Stresses via Different Expression Pattern in Pyrus ×bretschneideri Pollen

  2017cites this paper
• Bioinformatics Tools in Agriculture: An Update

  2017cites this paper
• Agrobacterium-Mediated Plant Transformation: Biology and Applications

  2017cites this paper
• Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes

  2017cites this paper
• Genomics Resources for Plants

  2016cites this paper
• Biophysically motivated regulatory network inference: progress and prospects

  2016cites this paper
• The Plant Ontology: A Tool for Plant Genomics.

  2016cites this paper
• Molecular Characterization and Global Expression Analysis of Lectin Receptor Kinases in Bread Wheat (Triticum aestivum)

  2016cites this paper
• Breakthrough Technologies PPIM : A Protein-Protein Interaction Database for Maize 1

  2016cites this paper