Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Microbiology

• Publication date

  2004-11-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1099/MIC.0.27041-0PMID 15528647
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Evolutionary trees from DNA sequences: A maximum likelihood approach

  2005cited by this paper
• Cloning and nucleotide sequence of the Escherichia coli K-12 ppsA gene, encoding PEP synthase

  2004cited by this paper
• The RhaS activator controls the Erwinia chrysanthemi 3937 genes rhiN, rhiT and rhiE involved in rhamnogalacturonan catabolism

  2004influential reference
• The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily.

  2003cited by this paper
• Utilization of l-Ascorbate by Escherichia coli K-12: Assignments of Functions to Products of the yjf-sga and yia-sgb Operons

  2002cited by this paper
• H‐NS‐dependent activation of pectate lyases synthesis in the phytopathogenic bacterium Erwinia chrysanthemi is mediated by the PecT repressor

  2002cited by this paper
• Global Expression Profiling of Acetate-grown Escherichia coli *

  2002cited by this paper
• The Oligogalacturonate-specific Porin KdgM of Erwinia chrysanthemi Belongs to a New Porin Family*

  2002influential reference
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• Two transporters, TogT and TogMNAB, are responsible for oligogalacturonide uptake in Erwinia chrysanthemi 3937

  2001influential reference
• Identification of TogMNAB, an ABC transporter which mediates the uptake of pectic oligomers in Erwinia chrysanthemi 3937

  2001influential reference
• Characterization of SotA and SotB, TwoErwinia chrysanthemi Proteins Which Modify Isopropyl-β-d-Thiogalactopyranoside and Lactose Induction of the Escherichia coli lac Promoter

  2000influential reference
• Comparative Analysis of Regulatory Patterns in Bacterial Genomes

  2000cited by this paper
• The COG database: a tool for genome-scale analysis of protein functions and evolution

  2000cited by this paper
• [Software for analyzing bacterial genomes].

  2000cited by this paper
• Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates and hexonates in gamma purple bacteria

  2000cited by this paper
• Self-regulation of pir, a regulatory protein responsible for hyperinduction of pectate lyase in Erwinia chrysanthemi EC16.

  1999cited by this paper
• Unsaturated glucuronyl hydrolase of Bacillus sp. GL1: novel enzyme prerequisite for metabolism of unsaturated oligosaccharides produced by polysaccharide lyases.

  1999cited by this paper
• kdgREcc Negatively Regulates Genes for Pectinases, Cellulase, Protease, HarpinEcc, and a Global RNA Regulator in Erwinia carotovora subsp.carotovora

  1999cited by this paper
• Erwinia carotovora has two KdgR-like proteins belonging to the IciR family of transcriptional regulators: identification and characterization of the RexZ activator and the KdgR repressor of pathogenesis.

  1999influential reference
• Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes.

  1999cited by this paper
• Rapid accumulation of intracellular 2-keto-3-deoxy-6-phosphogluconate in an Entner-Doudoroff aldolase mutant results in bacteriostasis.

  1998cited by this paper
• FruR-mediated transcriptional activation at the ppsA promoter of Escherichia coli.

  1998cited by this paper
• α-Galactoside Uptake in Rhizobium meliloti: Isolation and Characterization of agpA, a Gene Encoding a Periplasmic Binding Protein Required for Melibiose and Raffinose Utilization

  1998influential reference
• SHORT COMMUNICATION Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997cited by this paper
• Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

  1997cited by this paper
• Antagonistic effect of CRP and KdgR in the transcription control of the Erwinia chrysanthemi pectinolysis genes

  1997cited by this paper
• The cyclic AMP receptor protein is the main activator of pectinolysis genes in Erwinia chrysanthemi

  1997influential reference
• Regulatory systems modulating the transcription of the pectinase genes of Erwinia chrysanthemi are conserved in Escherichia coli.

  1996cited by this paper
• The Erwinia chrysanthemi pecT gene regulates pectinase gene expression

  1996cited by this paper
• Frur mediates catabolite activation of pyruvate kinase (pykF) gene expression in Escherichia coli

  1996cited by this paper
• Regulation of pectinolysis in Erwinia chrysanthemi.

  1996cited by this paper
• Pleiotropic Regulation of Central Carbohydrate Metabolism in Escherichia coli via the Gene csrA(*)

  1995cited by this paper
• Specific interactions of Erwinia chrysanthemi KdgR repressor with different operators of genes involved in pectinolysis.

  1994cited by this paper
• Pectate lyase from Bacillus subtilis: molecular characterization of the gene, and properties of the cloned enzyme

  1993cited by this paper
• Tmbase-A database of membrane spanning protein segments

  1993cited by this paper
• 'uidA-antibiotic-resistance cassettes for insertion mutagenesis, gene fusions and genetic constructions.

  1992cited by this paper
• Some of the out genes involved in the secretion of pectate lyases in Erwinia chrysanthemi are regulated by kdgR

  1992cited by this paper
• Purification and functional characterization of the KdgR protein, a major repressor of pectinolysis genes of Erwinia chrysanthemi

  1992cited by this paper
• The catalytic consequences of experimental evolution. Studies on the subunit structure of the second (ebg) beta-galactosidase of Escherichia coli, and on catalysis by ebgab, an experimental evolvant containing two amino acid substitutions.

  1992cited by this paper
• Environmental conditions affect transcription of the pectinase genes of Erwinia chrysanthemi 3937

  1992cited by this paper
• A Laboratory manual

  1989cited by this paper
• Isolation of Erwinia chrysanthemi mutants altered in pectinolytic enzyme production

  1989cited by this paper
• 2-keto-3-deoxygluconate transport system in Erwinia chrysanthemi

  1987influential reference
• Marker-exchange mutagenesis of a pectate lyase isozyme gene in Erwinia chrysanthemi

  1985cited by this paper
• phiEC2, a new generalized transducing phage of Erwinia chrysanthemi.

  1984cited by this paper
• Experiments in molecular genetics

  1972influential reference

• Comparative genomics studies on Dickeya Solani and D. dadantii and its adaptation to cold tolerance in potato: a review

  2026cites this paper
• Gene expression analyses on Dickeya solani strains of diverse virulence levels unveil important pathogenicity factors for this species

  2025cites this paper
• Virulence regulation in plant-pathogenic bacteria by host-secreted signals.

  2024cites this paper
• Differential Impact of Hexuronate Regulators ExuR and UxuR on the Escherichia coli Proteome

  2022cites this paper
• The integration host factor regulates multiple virulence pathways in bacterial pathogen Dickeya zeae MS2

  2022cites this paper
• Carbon catabolite repression in pectin digestion by the phytopathogen Dickeya dadantii

  2021cites this paper
• Whole Genome Sequencing Analysis of Salmonella enterica Serovar Typhi: History and Current Approaches

  2021cites this paper
• Molecular Interactions of Pectobacterium and Dickeya with Plants

  2021cites this paper
• Comparative Analysis of the IclR-Family of Bacterial Transcription Factors and Their DNA-Binding Motifs: Structure, Positioning, Co-Evolution, Regulon Content

  2021cites this paper
• A novel, cupin-type phosphoglucose isomerase in Escherichia coli.

  2020cites this paper
• The metabolic shift in highly and weakly virulent Dickeya solani strains is more affected by temperature than by mutations in genes encoding global virulence regulators.

  2020cites this paper
• Impact of plant pathogens infection on  Salmonella  enterica subsp. enterica serotype Typhimurium persistence in tomato plants.

  2020cites this paper
• A surrogate structural platform informed by ancestral reconstruction and resurrection of a putative carbohydrate binding module hybrid illuminates the neofunctionalization of a pectate lyase.

  2019cites this paper
• Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12

  2019cites this paper
• Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus

  2019cites this paper
• Salmonella adapts to plants and their environment during colonization of tomatoes.

  2019cites this paper
• Comparison of Highly and Weakly Virulent Dickeya solani Strains, With a View on the Pangenome and Panregulon of This Species

  2018cites this paper
• Probiotics in human gut microbiota can degrade host glycosaminoglycans

  2018cites this paper
• The Role of OmpR in the Expression of Genes of the KdgR Regulon Involved in the Uptake and Depolymerization of Oligogalacturonides in Yersinia enterocolitica

  2017influential citation
• The Ribosomal Protein RplY Is Required for Pectobacterium carotovorum Virulence and Is Induced by Zantedeschia elliotiana Extract.

  2017cites this paper
• Genetic and Genome-Wide Insights into Microbes Studied for Bioenergy

  2017cites this paper
• The enzymatic ulvan depolymerisation system from the alga-associated marine flavobacterium Formosa agariphila

  2017cites this paper
• KdgF, the missing link in the microbial metabolism of uronate sugars from pectin and alginate

  2016cites this paper
• Impact of OmpR on the membrane proteome of Yersinia enterocolitica in different environments: repression of major adhesin YadA and heme receptor HemR.

  2016cites this paper
• SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals

  2016cites this paper
• From multiple pathogenicity islands to a unique organized pathogenicity archipelago

  2016cites this paper
• Metabolism and Virulence Strategies in Dickeya-Host Interactions.

  2016cites this paper
• Régulation de la transcription des gènes de virulence bactériens : dynamique des complexes nucléoprotéïques

  2016cites this paper
• X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism

  2016cites this paper
• Alkaline pectinases: A review

  2015cites this paper
• Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2*

  2015cites this paper
• Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans

  2015cites this paper
• Contribution of the Salmonella enterica KdgR Regulon to Persistence of the Pathogen in Vegetable Soft Rots

  2015cites this paper
• Regulators Involved in Dickeya solani Virulence, Genetic Conservation and Functional Variability.

  2015cites this paper
• Engineering complex biological systems in bacteria through recombinase-assisted genome engineering

  2014cites this paper
• Escherichia coli kduD encodes an oxidoreductase that converts both sugar and steroid substrates

  2014cites this paper
• Regulators Involved in Dickeya solani Virulence, Genetic Conservation and Functional Variability.

  2014cites this paper
• Biochemical and structural characterization of a novel enzyme involved in uronic acid metabolism

  2014cites this paper
• Regulators involved in Dickeya solani virulence, genetic conservation, and functional variability.

  2014cites this paper
• Bacterial pectate lyases, structural and functional diversity.

  2014cites this paper
• Genomics of Plant-Associated Bacteria: The Soft Rot Enterobacteriaceae

  2014cites this paper
• Microbiological assessment of organic produce pre- and post-harvest on Maryland farms and impact of growing and handling methods on epiphytic bacteria

  2014cites this paper
• Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning

  2014cites this paper
• PelN Is a New Pectate Lyase of Dickeya dadantii with Unusual Characteristics

  2013cites this paper
• Novel Insights into E. coli’s Hexuronate Metabolism: KduI Facilitates the Conversion of Galacturonate and Glucuronate under Osmotic Stress Conditions

  2013cites this paper
• An Ancestral Member of the Polysaccharide Lyase Family 2 Displays Endolytic Activity and Magnesium Dependence

  2013cites this paper
• with a Typhoid Carrier in Malaysia enterica Serovar Typhi Strain Associated Pathogenomics Analysis of a Salmonella Genome Sequence and Comparative

  2013influential citation
• Evolution of the gut microbiota and the influence of diet.

  2013cites this paper
• Regulation of D-galacturonate metabolism in Caulobacter crescentus by HumR, a LacI-family transcriptional repressor

  2013cites this paper
• Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

  2013cites this paper
• Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria

  2013cites this paper
• Dickeya ecology, environment sensing and regulation of virulence programme.

  2013cites this paper
• Inference of Self-Regulated Transcriptional Networks by Comparative Genomics

  2012cites this paper
• Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria

  2012cites this paper
• Top 10 plant pathogenic bacteria in molecular plant pathology.

  2012cites this paper
• Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum

  2012cites this paper
• Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes

  2012cites this paper
• The role of secretion systems and small molecules in soft-rot Enterobacteriaceae pathogenicity.

  2012cites this paper
• Use of the Saccharomyces cerevisiae endopolygalacturonase promoter to direct expression in Escherichia coli

  2012cites this paper
• Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima.

  2012cites this paper
• Structure of a pectin methylesterase from Yersinia enterocolitica.

  2012influential citation
• Genome Sequence and Comparative Pathogenomics Analysis of a Salmonella enterica Serovar Typhi Strain Associated with a Typhoid Carrier in Malaysia

  2012cites this paper
• Review Top 10 plant pathogenic bacteria in molecular plant pathology

  2012cites this paper
• Comparative Genomic Analysis of the Hexuronate Metabolism Genes and Their Regulation in Gammaproteobacteria

  2011cites this paper
• Comparative proteomic and genetic analyses reveal unidentified mutations in Escherichia coli XL1-Blue and DH5α.

  2011cites this paper
• Control of Proteobacterial Central Carbon Metabolism by the HexR Transcriptional Regulator

  2011cites this paper
• Genome-wide transcriptome and proteome analysis of Escherichia coli expressing IrrE, a global regulator of Deinococcus radiodurans.

  2011cites this paper
• Untangling metabolic and communication networks: interactions of enterics with phytobacteria and their implications in produce safety.

  2011cites this paper
• KdgR, an IClR Family Transcriptional Regulator, Inhibits Virulence Mainly by Repression of hrp Genes in Xanthomonas oryzae pv. oryzae

  2011cites this paper
• Gluconate metabolism is required for virulence of the soft-rot pathogen Pectobacterium carotovorum.

  2010cites this paper
• Effect of multidrug-efflux transporter genes on dipeptide resistance and overproduction in Escherichia coli.

  2010cites this paper
• Structural and mechanistic classification of uronic acid-containing polysaccharide lyases.

  2010cites this paper
• Exploration et inférence du réseau de régulation de la transcription de la bactérie symbiotique intracellulaire à génome réduit Buchnera aphidicola

  2010cites this paper
• Regulation and Function of Escherichia coli Sugar Efflux Transporter A (SetA) during Glucose-Phosphate Stress

  2010influential citation
• DYNAMICS OF THE TRANSITION TO PATHOGENICITY IN ERWINIA CHRYSANTHEMI

  2010cites this paper
• Specific Responses of Salmonella enterica to Tomato Varieties and Fruit Ripeness Identified by In Vivo Expression Technology

  2010cites this paper
• Salmonella SdiA recognizes N-acyl homoserine lactone signals from Pectobacterium carotovorum in vitro, but not in a bacterial soft rot.

  2010cites this paper
• The Active Site of Oligogalacturonate Lyase Provides Unique Insights into Cytoplasmic Oligogalacturonate β-Elimination*

  2010cites this paper
• Recherche de signaux moléculaires végétaux impliqués dans l'induction de gènes chez la bactérie phytopathogène Erwinia chrysanthemi ( Dickeya dadantii )

  2010cites this paper
• Exploring the virulence strategy of the soft-rot plant pathogen Pectobacterium carotovorum

  2010cites this paper
• Human enteric pathogens in produce: un-answered ecological questions with direct implications for food safety.

  2009cites this paper
• Cloning and Characterization of Uronate Dehydrogenases from Two Pseudomonads and Agrobacterium tumefaciens Strain C 58 ‡

  2009cites this paper
• NanC crystal structure, a model for outer-membrane channels of the acidic sugar-specific KdgM porin family.

  2009cites this paper
• RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

  2009cites this paper
• Cloning and Characterization of Uronate Dehydrogenases from Two Pseudomonads and Agrobacterium tumefaciens Strain C58

  2008cites this paper
• Comparative genomics and functional annotation of bacterial transporters

  2008cites this paper
• The GacA global regulator is required for the appropriate expression of Erwinia chrysanthemi 3937 pathogenicity genes during plant infection.

  2008cites this paper
• Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria

  2008cites this paper
• Identification of Lacto-N-Biose I Phosphorylase from Vibrio vulnificus CMCP6

  2008cites this paper
• Structural Biology of Pectin Degradation by Enterobacteriaceae

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  2008cites this paper
• Analysis of the LacI family regulators of Erwinia chrysanthemi 3937, involvement in the bacterial phytopathogenicity.

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• Modeling the onset of virulence in a pectinolytic bacterium.

  2007cites this paper
• Inactivating FruR global regulator in plasmid-bearing Escherichia coli alters metabolic gene expression and improves growth rate.

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  2007cites this paper