Evolution of the RpoS Regulon: Origin of RpoS and the Conservation of RpoS-Dependent Regulation in Bacteria

No abstract is available for this paper.

• Publication year

  2010

• Venue

  Journal of Molecular Evolution

• Publication date

  2010-05-27

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00239-010-9352-0PMID 20506020
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Evolution of transcriptional regulatory circuits in bacteria.

  2009cited by this paper
• Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

  2009cited by this paper
• Toolbox model of evolution of prokaryotic metabolic networks and their regulation

  2009cited by this paper
• BLAST+: architecture and applications

  2009cited by this paper
• Transcription factor function and promoter architecture govern the evolution of bacterial regulons

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• Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria.

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• Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium

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• What antimicrobial resistance has taught us about horizontal gene transfer.

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• Role of RpoS in Virulence of Pathogens

  2009cited by this paper
• Polymorphism and selection of rpoS in pathogenic Escherichia coli

  2009cited by this paper
• Role of RpoS in the Virulence of Citrobacter rodentium

  2008cited by this paper
• Sigma factors in Pseudomonas aeruginosa.

  2008cited by this paper
• EcID. A database for the inference of functional interactions in E. coli

  2008influential reference
• Cloning, expression, purification and characterization of the stress kinase YeaG from Escherichia coli.

  2008influential reference
• Choosing BLAST options for better detection of orthologs as reciprocal best hits

  2008cited by this paper
• Microbial evolution: the genome, the regulome and beyond.

  2008cited by this paper
• Origins of Flagellar Gene Operons and Secondary Flagellar Systems

  2007cited by this paper
• A Novel Lineage of Proteobacteria Involved in Formation of Marine Fe-Oxidizing Microbial Mat Communities

  2007cited by this paper
• Clustal W and Clustal X version 2.0

  2007cited by this paper
• The molecular basis of selective promoter activation by the σS subunit of RNA polymerase

  2007cited by this paper
• Aeons of distress: an evolutionary perspective on the bacterial SOS response.

  2007cited by this paper
• MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

  2007cited by this paper
• The −35 sequence location and the Fis–sigma factor interface determine σS selectivity of the proP (P2) promoter in Escherichia coli

  2007cited by this paper
• Sigma(s)-Dependent carbon-starvation induction of pbpG (PBP 7) is required for the starvation-stress response in Salmonella enterica serovar Typhimurium.

  2007cited by this paper
• Variation in Stress Responses within a Bacterial Species and the Indirect Costs of Stress Resistance

  2007cited by this paper
• Evidence that RpoS (sigmaS) in Borrelia burgdorferi is controlled directly by RpoN (sigma54/sigmaN).

  2007cited by this paper
• Comparison of the RpoH-Dependent Regulon and General Stress Response in Neisseria gonorrhoeae

  2006cited by this paper
• Bacterial Stress Response

  2006cited by this paper
• Evidence that RpoS (σS) in Borrelia burgdorferi Is Controlled Directly by RpoN (σ54/σN)

  2006cited by this paper
• Time-Dependent Proteome Alterations under Osmotic Stress during Aerobic and Anaerobic Growth in Escherichia coli

  2006cited by this paper
• Soluble Aldose Sugar Dehydrogenase from Escherichia coli

  2006cited by this paper
• The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

  2006cited by this paper
• New Escherichia coli outer membrane proteins identified through prediction and experimental verification

  2006cited by this paper
• Bacterial regulatory networks are extremely flexible in evolution

  2006cited by this paper
• The membrane bound bacterial lipocalin Blc is a functional dimer with binding preference for lysophospholipids

  2006cited by this paper
• Genotype-by-Environment Interactions Influencing the Emergence of rpoS Mutations in Escherichia coli Populations

  2006cited by this paper
• Role of the spacer between the −35 and −10 regions in σs promoter selectivity in Escherichia coli

  2006cited by this paper
• Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: σS-Dependent Genes, Promoters, and Sigma Factor Selectivity

  2005cited by this paper
• The sequence upstream of the −10 consensus sequence modulates the strength and induction time of stationary-phase promoters in Escherichia coli

  2005cited by this paper
• Comparison of the PhoPQ Regulon in Escherichia coli and Salmonella typhimurium

  2005influential reference
• An unusual primary sigma factor in the Bacteroidetes phylum

  2005cited by this paper
• Analysis of the ospC Regulatory Element Controlled by the RpoN-RpoS Regulatory Pathway in Borrelia burgdorferi

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• Sucrose utilisation in bacteria: genetic organisation and regulation

  2005cited by this paper
• Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

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• The RpoS Sigma Factor in the Dissimilatory Fe(III)-Reducing Bacterium Geobacter sulfurreducens

  2004cited by this paper
• Escherichia coli acid resistance: tales of an amateur acidophile

  2004cited by this paper
• The Pseudomonas aeruginosa RpoS regulon and its relationship to quorum sensing

  2004influential reference
• Positive selection for loss of RpoS function in Escherichia coli.

  2004cited by this paper
• Analysis of Promoter Elements Involved in the Transcriptional Initiation of RpoS-Dependent Borrelia burgdorferi Genes

  2004cited by this paper
• Heat Shock (σ32 and HrcA/CIRCE) Regulons in β-, γ- and ε-Proteobacteria

  2004cited by this paper
• Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12

  2004influential reference
• RpoS Is Not Central to the General Stress Response in Borrelia burgdorferi but Does Control Expression of One or More Essential Virulence Determinants

  2004cited by this paper
• NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

  2004cited by this paper
• The σ70 family of sigma factors

  2003cited by this paper
• Polymorphism of genes encoding SOS polymerases in natural populations of Escherichia coli.

  2003influential reference
• Identification and Molecular Characterization of the Mg2+ Stimulon of Escherichia coli

  2003cited by this paper
• The sigma70 family of sigma factors.

  2003cited by this paper
• Global Analyses of Transcriptomes and Proteomes of a Parent Strain and an l-Threonine-Overproducing Mutant Strain

  2003cited by this paper
• A role for mechanosensitive channels in survival of stationary phase: Regulation of channel expression by RpoS

  2003cited by this paper
• Multiple sigma subunits and the partitioning of bacterial transcription space.

  2003influential reference
• Bacterial iron homeostasis.

  2003cited by this paper
• Heat shock (sigma32 and HrcA/CIRCE) regulons in beta-, gamma- and epsilon-proteobacteria.

  2003cited by this paper
• Genomic variability among enteric pathogens: the case of the mutS-rpoS intergenic region.

  2003cited by this paper
• Role of the Stationary Growth Phase Sigma Factor RpoS of Burkholderia pseudomallei in Response to Physiological Stress Conditions

  2003cited by this paper
• Adaptation of Borrelia burgdorferi in the vector and vertebrate host.

  2003cited by this paper
• A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history.

  2002cited by this paper
• Iron Detoxification Properties of Escherichia coliBacterioferritin

  2002cited by this paper
• TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

  2002cited by this paper
• Phylogenetic Analysis of Evolutionary Relationships of the Planctomycete Division of the Domain Bacteria Based on Amino Acid Sequences of Elongation Factor Tu

  2001cited by this paper
• The Y-family of DNA polymerases.

  2001cited by this paper
• Expression of Borrelia burgdorferi OspC and DbpA is controlled by a RpoN–RpoS regulatory pathway

  2001cited by this paper
• Bacterial virulence gene regulation: an evolutionary perspective.

  2000cited by this paper
• Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation.

  2000cited by this paper
• Identification of RpoS (ςS)-Regulated Genes inSalmonella enterica Serovar Typhimurium

  2000cited by this paper
• Altered Stationary-Phase Response in aBorrelia burgdorferi rpoS Mutant

  2000cited by this paper
• The bacterial lipocalins.

  2000cited by this paper
• Gene Conservation and Loss in themutS-rpoS Genomic Region of PathogenicEscherichia coli

  2000cited by this paper
• A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi

  2000cited by this paper
• The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes.

  2000influential reference
• Structure and function of the bacterial mechanosensitive channel of large conductance

  1999cited by this paper
• Use of Single-Strand Conformation Polymorphism Analysis To Examine the Variability of the rpoSSequence in Environmental Isolates of Salmonellae

  1999cited by this paper
• Specificity crosstalk among group 1 and group 2 sigma factors in the cyanobacterium Synechococcus sp. PCC7942: in vitro specificity and a phylogenetic analysis

  1999cited by this paper
• RpoS-dependent stress tolerance in Pseudomonas aeruginosa.

  1999cited by this paper
• The Legionella pneumophila rpoS Gene Is Required for Growth within Acanthamoeba castellanii

  1999cited by this paper
• Role of rpoS in Stress Survival and Virulence of Vibrio cholerae

  1998cited by this paper
• Eubacterial sigma-factors.

  1998cited by this paper
• Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes

  1998cited by this paper
• Molecular systematic studies of eubacteria, using sigma70-type sigma factors of group 1 and group 2

  1997cited by this paper
• Expression of two alternative sigma factors of Synechococcus sp. strain PCC 7002 is modulated by carbon and nitrogen stress.

  1997cited by this paper
• Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi

  1997cited by this paper
• The rpoD1 gene product is a principal sigma factor of RNA polymerase in Microcystis aeruginosa K-81.

  1996cited by this paper
• Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies

  1996cited by this paper
• The planctomycetes: emerging models for microbial ecology, evolution and cell biology.

  1995cited by this paper
• The rpoS gene from Yersinia enterocolitica and its influence on expression of virulence factors

  1995cited by this paper
• The role of the sigma factor sigma S (KatF) in bacterial global regulation.

  1994cited by this paper
• A large-conductance mechanosensitive channel in E. coli encoded by mscL alone

  1994cited by this paper
• The Salmonella typhimurium katF (rpoS) gene: cloning, nucleotide sequence, and regulation of spvR and spvABCD virulence plasmid genes

  1994cited by this paper
• Cloning, analysis and expression of an rpoS homologue gene from Pseudomonas aeruginosa PAO1.

  1994cited by this paper
• Cloning, analysis and expression of an rpoS homologue gene from Pseudomonas aeruginosa PAO1

  1994cited by this paper
• Microbial competition: Escherichia coli mutants that take over stationary phase cultures.

  1993cited by this paper

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• Transcriptome-Proteome Profiling in Burkholderia thailandensis during the Transition from Exponential to Stationary Phase

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• A Review of Antibiotic Contamination in Wastewater: Sources, Impacts, and Microbial Bioremediation Techniques

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• RpoS and the bacterial general stress response

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• Expression of Rhodococcus erythropolis stress genes in planctonic culture supplemented with various hydrocabons.

  2024cites this paper
• RpoS-Regulated Genes and Phenotypes in the Phytopathogenic Bacterium Pectobacterium atrosepticum

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• The role of oxidative stress in genome destabilization and adaptive evolution of bacteria.

  2023cites this paper
• Biosynthesis and Gene Regulation of Rhamnolipid Congeners

  2023cites this paper
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  2020cites this paper
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• High Salt Cross-Protects Escherichia coli from Antibiotic Treatment through Increasing Efflux Pump Expression

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  2016cites this paper
• Regulators of Oxidative Stress Response Genes in Escherichia Coli and Their Conservation in Bacteria

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• General Stress Signaling in the Alphaproteobacteria.

  2015cites this paper
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  2015cites this paper
• Protein mistranslation protects bacteria against oxidative stress

  2015cites this paper
• [Sources of antibiotics in natural environments and their biological role].

  2014cites this paper
• Elucidating the function of the RpoS regulon.

  2014cites this paper
• Complementation of a temperature sensitive Escherichia coli rpoD mutation using Lactobacillus sigma factors

  2014cites this paper
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