Gene copy number evolution during tetraploid cotton radiation

No abstract is available for this paper.

• Publication year

  2010

• Venue

  Heredity

• Publication date

  2010-02-17

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/hdy.2009.192PMID 20160757
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids

  2009cited by this paper
• Genetic Regulation of Meiotic Cross-Overs between Related Genomes in Brassica napus Haploids and Hybrids[C][W]

  2009cited by this paper
• The Sorghum bicolor genome and the diversification of grasses

  2009cited by this paper
• The preferential retention of starch synthesis genes reveals the impact of whole-genome duplication on grass evolution.

  2008cited by this paper
• Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.

  2008cited by this paper
• The current excitement about copy-number variation: how it relates to gene duplications and protein families.

  2008cited by this paper
• Parallel Domestication, Convergent Evolution and Duplicated Gene Recruitment in Allopolyploid Cotton

  2008cited by this paper
• Synteny and Collinearity in Plant Genomes

  2008cited by this paper
• The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

  2008cited by this paper
• Meta-analysis of Polyploid Cotton QTL Shows Unequal Contributions of Subgenomes to a Complex Network of Genes and Gene Clusters Implicated in Lint Fiber Development

  2007cited by this paper
• Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

  2007cited by this paper
• Genomic Changes in Resynthesized Brassica napus and Their Effect on Gene Expression and Phenotype[W][OA]

  2007cited by this paper
• Extensive Concerted Evolution of Rice Paralogs and the Road to Regaining Independence

  2007cited by this paper
• Gene loss and evolutionary rates following whole-genome duplication in teleost fishes.

  2006cited by this paper
• Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.

  2006cited by this paper
• Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

  2006cited by this paper
• A Comparative Genomics Strategy for Targeted Discovery of Single-Nucleotide Polymorphisms and Conserved-Noncoding Sequences in Orphan Crops1[W]

  2006cited by this paper
• A global assembly of cotton ESTs.

  2006cited by this paper
• Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity.

  2006cited by this paper
• Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium.

  2006cited by this paper
• Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon.

  2006influential reference
• Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

  2006cited by this paper
• Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.

  2006cited by this paper
• Modeling gene and genome duplications in eukaryotes.

  2005cited by this paper
• Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy.

  2005influential reference
• Detection of Chromosomal Rearrangements Derived From Homeologous Recombination in Four Mapping Populations of Brassica napus L.

  2005cited by this paper
• The advantages and disadvantages of being polyploid

  2005cited by this paper
• Rapid Subfunctionalization Accompanied by Prolonged and Substantial Neofunctionalization in Duplicate Gene Evolution

  2005cited by this paper
• Functional genomics of cell elongation in developing cotton fibers

  2004cited by this paper
• Very Low Gene Duplication Rate in the Yeast Genome

  2004cited by this paper
• Organ-Specific Silencing of Duplicated Genes in a Newly Synthesized Cotton Allotetraploid

  2004cited by this paper
• Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

  2004cited by this paper
• A 3347-Locus Genetic Recombination Map of Sequence-Tagged Sites Reveals Features of Genome Organization, Transmission and Evolution of Cotton (Gossypium)

  2004cited by this paper
• Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

  2004cited by this paper
• Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution

  2004cited by this paper
• Escape from X inactivation

  2003cited by this paper
• Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

  2003cited by this paper
• Polyploidy and the Evolutionary History of Cotton

  2003influential reference
• Paucity of Genes on the Drosophila X Chromosome Showing Male-Biased Expression

  2003cited by this paper
• Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

  2003influential reference
• Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

  2003cited by this paper
• Rate variation among nuclear genes and the age of polyploidy in Gossypium.

  2003influential reference
• Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

  2002cited by this paper
• Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium).

  2002influential reference
• corrigendum: Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

  2002cited by this paper
• Rapid differentiation of homeologous chromosomes in newly-formed allopolyploid wheat

  2002cited by this paper
• Polyploid formation in cotton is not accompanied by rapid genomic changes

  2001cited by this paper
• Allopolyploidy-Induced Rapid Genome Evolution in the Wheat (Aegilops–Triticum) Group

  2001cited by this paper
• X-chromosome inactivation: counting, choice and initiation

  2001cited by this paper
• Sequence Elimination and Cytosine Methylation Are Rapid and Reproducible Responses of the Genome to Wide Hybridization and Allopolyploidy in Wheat

  2001cited by this paper
• Polyploid formation in cotton is not accompanied by rapid genomic changes.

  2001cited by this paper
• Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

  2001cited by this paper
• Protein-coding genes are epigenetically regulated in Arabidopsis polyploids.

  2001cited by this paper
• Phenotypic Instability and Rapid Gene Silencing in Newly Formed Arabidopsis Allotetraploids

  2000cited by this paper
• Expression of a lipid transfer protein gene family during cotton fibre development.

  2000cited by this paper
• The evolutionary fate and consequences of duplicate genes.

  2000influential reference
• The probability of duplicate gene preservation by subfunctionalization.

  2000cited by this paper
• Characterisation of a cotton gene expressed late in fibre cell elongation

  1999cited by this paper
• The mitochondrial genome of allotetraploid cotton (Gossypium L.).

  1999cited by this paper
• Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

  1998cited by this paper
• Polyploid formation created unique avenues for response to selection in Gossypium (cotton).

  1998influential reference
• Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.

  1998cited by this paper
• The (epi)genetic control of mammalian X-chromosome inactivation.

  1997cited by this paper
• Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes.

  1997cited by this paper
• Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance.

  1997cited by this paper
• Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica.

  1997cited by this paper
• Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution.

  1995influential reference
• A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome.

  1994influential reference
• New World tetraploid cottons contain Old World cytoplasm.

  1989cited by this paper
• Evolution by Gene Duplication

  1970cited by this paper
• Possible significances of duplication in evolution.

  1951cited by this paper
• Possible Significance of Duplication in Evolution

  1951cited by this paper
• The Part Played by Recurrent Mutation in Evolution

  1933influential reference

• Genome-wide analysis of the UFGT gene family in colored cotton: evolution, structure and expression patterns

  2025cites this paper
• Genome-wide analysis and prediction of chloroplast and mitochondrial RNA editing sites of AGC gene family in cotton (Gossypium hirsutum L.) for abiotic stress tolerance

  2024cites this paper
• In Silico Identification and Characterization of Rare Cold Inducible 2 (RCI2) Gene Family in Cotton

  2024cites this paper
• Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids

  2021cites this paper
• Genome-Wide Study of NOT2_3_5 Protein Subfamily in Cotton and Their Necessity in Resistance to Verticillium wilt

  2021cites this paper
• Cotton genome evolution and features of its structural and functional organization

  2020cites this paper
• GhN/AINV13 positively regulates cotton stress tolerance by interacting with the 14-3-3 protein.

  2020cites this paper
• Genome-Wide Characterization and Expression Analysis of NHX Gene Family under Salinity Stress in Gossypium barbadense and Its Comparison with Gossypium hirsutum

  2020cites this paper
• Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family

  2020cites this paper
• Functional characterization of Gh_A08G1120 (GH3.5) gene reveal their significant role in enhancing drought and salt stress tolerance in cotton

  2019cites this paper
• Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii).

  2018cites this paper
• Whole Genome Analysis of Cyclin Dependent Kinase (CDK) Gene Family in Cotton and Functional Evaluation of the Role of CDKF4 Gene in Drought and Salt Stress Tolerance in Plants

  2018cites this paper
• Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum

  2016cites this paper
• Analysis of the sucrose synthase gene family in tobacco: structure, phylogeny, and expression patterns

  2015cites this paper
• The genome and transcriptome of Triticeae genomes and the impact of polyploidization

  2014cites this paper
• Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae)

  2014cites this paper
• Synthetic Haplotypes, Species, Karyotypes, and Protoorganisms?

  2014cites this paper
• Paleogenomics as a Guide for Traits Improvement

  2014cites this paper
• Polyploid Speciation and Genome Evolution: Lessons from Recent Allopolyploids

  2014cites this paper
• Polyploidy-associated genome modifications during land plant evolution

  2014cites this paper
• Gene duplication within the Green Lineage: the case of TEL genes.

  2012cites this paper
• Jeans, Genes, and Genomes: Cotton as a Model for Studying Polyploidy

  2012cites this paper
• Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns

  2012cites this paper
• Two-Phase Resolution of Polyploidy in the Arabidopsis Metabolic Network Gives Rise to Relative and Absolute Dosage Constraints[W]

  2011cites this paper
• What we still don't know about polyploidy.

  2010cites this paper