Widespread sampling biases in herbaria revealed from large-scale digitization

No abstract is available for this paper.

• Publication year

  2017

• Venue

  bioRxiv

• Publication date

  2017-07-18

• Fields of study

  Biology, Medicine, Geography, Environmental Science

• Identifiers
  DOI 10.1101/165480PMID 29083043
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Assessing relevance

  2018cited by this paper
• Understanding the Processes Underpinning Patterns of Phylogenetic Regionalization.

  2017cited by this paper
• Retrospective analysis of heavy metal contamination in Rhode Island based on old and new herbarium specimens1

  2017cited by this paper
• Assessing the Relevance of Herbarium Collections as Tools for Conservation Biology

  2017cited by this paper
• CrowdCurio: an online crowdsourcing platform to facilitate climate change studies using herbarium specimens.

  2017cited by this paper
• Old Plants, New Tricks: Phenological Research Using Herbarium Specimens.

  2017cited by this paper
• Producing a plant diversity portal for South Africa

  2017cited by this paper
• Multidimensional biases, gaps and uncertainties in global plant occurrence information.

  2016influential reference
• Realising the potential of herbarium records for conservation biology

  2016cited by this paper
• The New England Vascular Plants Project: 295,000 specimens and counting

  2016cited by this paper
• Mapping ignorance: 300 years of collecting flowering plants in Africa

  2016cited by this paper
• Doubtful pathways to cold tolerance in plants

  2015cited by this paper
• Limited sampling hampers “big data” estimation of species richness in a tropical biodiversity hotspot

  2015cited by this paper
• Spatial incongruence among hotspots and complementary areas of tree diversity in southern Africa

  2015cited by this paper
• Herbarium records are reliable sources of phenological change driven by climate and provide novel insights into species' phenological cueing mechanisms.

  2015cited by this paper
• Applied Spatial Data Analysis with R

  2015cited by this paper
• The embryonic shoot: a lifeline through winter.

  2014cited by this paper
• Ecological Effects of Roads on the Plant Diversity of Coastal Wetland in the Yellow River Delta

  2014cited by this paper
• Determining past leaf-out times of New England's deciduous forests from herbarium specimens.

  2014cited by this paper
• Avoiding (Re)extinction

  2014cited by this paper
• The American Journal of Botany: into the second century of publication.

  2014cited by this paper
• Change of Species and Habitat Diversity in the Pannonian Region of Eastern Lower Austria over 170 Years: Using Herbarium Records as a Witness

  2014cited by this paper
• Herbarium specimens show contrasting phenological responses to Himalayan climate

  2014cited by this paper
• One and Done? Optimal Decisions From Very Few Samples

  2014cited by this paper
• Mapping patterns of ferns species richness through the use of herbarium data

  2013cited by this paper
• Crime and Tourism in South Africa

  2013cited by this paper
• Non-geographic collecting biases in herbarium specimens of Australian daisies (Asteraceae)

  2013cited by this paper
• Biological collections in an ever changing world: Herbaria as tools for biogeographical and environmental studies

  2013cited by this paper
• Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

  2013cited by this paper
• The Effects of Sampling Bias and Model Complexity on the Predictive Performance of MaxEnt Species Distribution Models

  2013cited by this paper
• The taxonomic name resolution service: an online tool for automated standardization of plant names

  2013cited by this paper
• Temperature-dependent shifts in phenology contribute to the success of exotic species with climate change.

  2013cited by this paper
• Vegetative phase change and shoot maturation in plants.

  2013cited by this paper
• Three keys to the radiation of angiosperms into freezing environments

  2013cited by this paper
• Regional prediction of wetland degradation in South Africa

  2012cited by this paper
• Subsampling Herbarium Collections to Assess Geographic Diversity Gradients: A Case Study with Endemic Orchidaceae and Rubiaceae in Cameroon

  2012cited by this paper
• Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism.

  2012cited by this paper
• Phylogenetic Patterns of Extinction Risk in the Eastern Arc Ecosystems, an African Biodiversity Hotspot

  2012cited by this paper
• Big hitting collectors make massive and disproportionate contribution to the discovery of plant species

  2012cited by this paper
• Predicting Species Distributions from Samples Collected along Roadsides

  2012cited by this paper
• Distributional migrations, expansions, and contractions of tropical plant species as revealed in dated herbarium records

  2012cited by this paper
• phytools: an R package for phylogenetic comparative biology (and other things)

  2012cited by this paper
• Tracking origins of invasive herbivores through herbaria and archival DNA: the case of the horse‐chestnut leaf miner

  2011cited by this paper
• Testing Darwin's naturalization hypothesis in the Azores.

  2011cited by this paper
• Robust detection of plant species distribution shifts under biased sampling regimes

  2011cited by this paper
• Wetland features and landscape context predict the risk of wetland habitat loss.

  2011cited by this paper
• Sampling procedures and species estimation: testing the effectiveness of herbarium data against vegetation sampling in an oceanic island

  2011cited by this paper
• Biological collections and ecological/environmental research: a review, some observations and a look to the future

  2010cited by this paper
• Beyond the forest edge: Ecology, diversity and conservation of the grassy biomes

  2010cited by this paper
• Traffic Effects on Bird Counts on North American Breeding Bird Survey Routes

  2010cited by this paper
• Adephylo: New Tools for Investigating the Phylogenetic Signal in Biological Traits

  2010cited by this paper
• Applications and limitations of museum data for conservation and ecology, with particular attention to species distribution models

  2010cited by this paper
• An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants:

  2009cited by this paper
• Index Herbariorum: a global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium.

  2009cited by this paper
• Guadalupe Island: Lost paradise recovered? Overgrazing impact on extinction in a remote oceanic island as estimated through accumulation functions

  2008cited by this paper
• Migration, Multiculturalism and Language Maintenance in Australia: Polish Migration to Melbourne in the 1980s

  2008cited by this paper
• Phylocom: software for the analysis of phylogenetic community structure and trait evolution

  2008cited by this paper
• Mammals on the EDGE: Conservation Priorities Based on Threat and Phylogeny

  2007cited by this paper
• Implications of collection patterns of botanical specimens on their usefulness for conservation planning: an example of two neotropical plant families (Moraceae and Myristicaceae) in Peru

  2007cited by this paper
• Limitations of Biodiversity Databases: Case Study on Seed‐Plant Diversity in Tenerife, Canary Islands

  2007cited by this paper
• The Botanist Effect Revisited: Plant Species Richness, County Area, and Human Population Size in the United States

  2007cited by this paper
• Incorporating Evolutionary Measures into Conservation Prioritization

  2006cited by this paper
• Global mammal distributions, biodiversity hotspots, and conservation

  2006influential reference
• Photographs and herbarium specimens as tools to document phenological changes in response to global warming.

  2006cited by this paper
• The botanist effect: counties with maximal species richness tend to be home to universities and botanists

  2006cited by this paper
• Global hotspots of species richness are not congruent with endemism or threat

  2005influential reference
• Phylomatic: tree assembly for applied phylogenetics

  2005cited by this paper
• The Decline of Plant Collecting in the United States: A Threat to the Infrastructure of Biodiversity Studies

  2004cited by this paper
• A new apartheid? The spatial implications of fear of crime in Cape Town, South Africa

  2004cited by this paper
• Implications of the Decline in Plant Collecting for Systematic and Floristic Research

  2004cited by this paper
• Voronoi Diagrams and Delaunay Triangulations

  2004cited by this paper
• Editorial Announcement

  2004cited by this paper
• Impact of road construction on vegetation alongside Qinghai-Xizang highway and railway

  2003cited by this paper
• Natural history collections in crisis as funding is slashed

  2003cited by this paper
• The importance of herbaria

  2003cited by this paper
• Impact of road construction on vegetation alongside Qinghai-Xizang highway and railway

  2003cited by this paper
• TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE

  2003cited by this paper
• Phylogenies and Community Ecology

  2002cited by this paper
• Systematic data in biodiversity studies: use it or lose it.

  2002cited by this paper
• Quantitative tools for perfecting species lists

  2002cited by this paper
• Conservation of Exploited Species

  2001cited by this paper
• Lessons From an Inventory of the Ames, Iowa, Flora (1859-2000)

  2001cited by this paper
• CRIME AND TOURISM IN SOUTH AFRICA: INTERNATIONAL TOURISTS PERCEPTION AND RISK

  2000cited by this paper
• A survey of the herbaria of the southeast United States

  2000cited by this paper
• Realising the Potential

  2000cited by this paper
• The Global Decline of Reptiles, Déjà Vu Amphibians

  2000cited by this paper
• Interoperability of biodiversity databases: biodiversity information on every desktop.

  2000cited by this paper
• The Plant Hunters: Two Hundred Years of Adventure and Discovery around the World

  2000influential reference
• The decline of

  2000cited by this paper
• Assessing the Geographic Representativeness of Genebank Collections: the Case of Bolivian Wild Potatoes

  2000influential reference
• A method for testing the assumption of phylogenetic independence in comparative data

  1999influential reference
• Inferring the historical patterns of biological evolution

  1999cited by this paper
• ROADS AND THEIR MAJOR ECOLOGICAL EFFECTS

  1998cited by this paper
• Post-war immigration: 1947–98

  1998cited by this paper
• Environment & Urbanization

  1996cited by this paper
• The Galapagos Tortoises: Nomenclatural and Survival Status

  1996cited by this paper
• Systematics, biological knowledge and environmental conservation

  1995cited by this paper
• Reptiles as a food resource

  1995cited by this paper
• Systematics and biodiversity.

  1994cited by this paper
• Systematics and biodiversity.

  1994cited by this paper

• Historical trends and biases in North American mammal scientific collections (1800–2018)

  2026cites this paper
• Distribution and conservation status of the species of the genus Peperomia (Piperaceae) endemic to Mexico

  2026cites this paper
• Animal‐mediated seed dispersal: A review of study methods

  2026cites this paper
• Detecting community changes in response to management practices using bryophyte herbarium specimens collected in the southern Appalachians

  2026cites this paper
• Untangling Sampling Bias From Lemur Dietary Specialization

  2026cites this paper
• Exploring the data demands and global opportunities for reconstructing morphological responses to climate change

  2026cites this paper
• Spatial Patterns and Diversity of the Genus Agave in the Southern Iberian Peninsula: The Role of Anthropogenic Drivers in the Expansion of Agave americana

  2026cites this paper
• Nine changes needed to deliver a radical transformation in biodiversity measurement.

  2026cites this paper
• DNA Barcoding for Herbarium Specimens of the Red Alga Meristotheca pilulaora and Molecular Marker Development for Species Identification

  2026cites this paper
• From data to decisions: Toward a Biodiversity Monitoring Standards Framework.

  2026cites this paper
• Digitization of the historical Herbarium of Giovanni Giannini at Pisa (PI-GIANN)

  2026cites this paper
• Is spring break coming early? Effects of climate change on Alabama's native plant flowering phenology1

  2026cites this paper
• Mapping Biodiversity Through Time and Space: Patterns and Drivers of Fabaceae Collection in Mozambique.

  2026cites this paper
• The Introduction of Chinese Plants into the United States: The 1898–1949 Period

  2026cites this paper
• Global Availability of Plant DNA Barcodes as Genomic Resources to Support Basic and Policy‐Relevant Biodiversity Research

  2025cites this paper
• Herbarium specimens reveal a constrained seasonal climate niche despite diverged annual climates across a wildflower clade

  2025cites this paper
• Far From Roads, Challenges Arise: Unravelling Knowledge Gaps in the Occurrence of Cave‐Restricted Species on the African Continent

  2025cites this paper
• Reconstructing the introduction history of the invasive grass Taeniatherum caput-medusae subsp. asperum in the western United States: Low within-population genetic diversity does not preclude invasion.

  2025cites this paper
• Long-distance dispersals and ecological transitions underlie the biogeographic expansion of the pantropical magnoliid genus Xylopia (Annonaceae)

  2025cites this paper
• The promise of digital herbarium specimens in large-scale phenology research.

  2025cites this paper
• Climate‐Mediated Hybridisation and the Future of Andean Forests

  2025cites this paper
• Endemic and invasion dynamics of wild tomato species on the Galápagos Islands, across two centuries of collection records

  2025cites this paper
• Large-scale tidal wetland mapping based on point-sample-driven debiased and label noise learning: A case study in Asia

  2025cites this paper
• Herbarium specimens reveal regional patterns of tallgrass prairie invasion and changing species abundance across 130 years.

  2025cites this paper
• Phenology of Botrypus virginianus Across 135 Degrees of Latitude

  2025cites this paper
• Retrospective phenology in western Mediterranean plants: revealing climate change patterns through herbarium specimens

  2025cites this paper
• Analysis of Mexican Cuscuta (Convolvulaceae) herbarium data to address their hosts, and the potential distribution of the most common species

  2025cites this paper
• Herbarium Collection Biases in Subtropical Mountains in Jiangxi, China Over the Past Century

  2025influential citation
• Human footprint with machine learning identifies risks of the invasive weed Conyza sumatrensis across land-use types under climate change

  2025cites this paper
• Impacts of road networks on the geography of floristic collections in China

  2025cites this paper
• Patterns and Changes in Orchid Frequencies in Southern New England

  2025cites this paper
• Natural History Collections at the Crossroads: Shifting Priorities and Data‐Driven Opportunities

  2025cites this paper
• Estimating Rooting Depth From Herbarium Specimens Might Be More Accurate Than Using Large Trait Databases

  2025cites this paper
• A critical reassessment of the novel weapons hypothesis and allelopathy as an adaptive strategy that facilitates plant invasion

  2025cites this paper
• Herbarium specimens reveal drivers of Arctic shrub growth.

  2025cites this paper
• Morphological Characterization of Diaspores, Seed Germination and Estimation of Reproductive Phenology of Cereus fernambucensis (Cactaceae)

  2025cites this paper
• Shifting spring ephemeral pollination windows under climate change – a three‐body problem

  2025cites this paper
• Integrating approaches and methodologies into phenological research in Neotropical dry forests: a systematic review

  2025cites this paper
• Biases in Amphibian Sampling in the Amazon: Using Infrastructure and Accessibility Data to Identify Sampling Gaps

  2025cites this paper
• Leveraging machine learning and citizen science data to describe flowering phenology across South Africa

  2025cites this paper
• Tracing holotype trajectories: Mapping the movement of the most valuable herbarium specimens

  2025cites this paper
• The collector practices that shape spatial, temporal, and taxonomic bias in herbaria.

  2025cites this paper
• CLAY AFFINITY AND ENDEMISM IN CALIFORNIA'S FLORA

  2025cites this paper
• Using reflectance spectra and Pl@ntNet to identify herbarium specimens: a case study with Lithocarpus.

  2025cites this paper
• AI for difficult herbarium specimens: identification of peat mosses (subgenus Sphagnum) without dissection.

  2025cites this paper
• Unlocking historical plant interactions in herbarium collections

  2025cites this paper
• Harnessing artificial intelligence to fill global shortfalls in biodiversity knowledge

  2025cites this paper
• Harnessing the benefits of herbarium specimen digitisation for inferring recent and ongoing plant extinctions.

  2025cites this paper
• New Perspectives on European Wildcat ( Felis silvestris , Schreber 1777) Habitat Suitability in Britain: Integrating Fossil Records to Improve Baselines for Reintroduction

  2025cites this paper
• Climate change intensifies plant-pollinator mismatch and increases secondary extinction risk for plants in northern latitudes.

  2025cites this paper
• Collection biases in aquatic macrophytes in Brazil: a case study with duckweed (Lemnoideae, Araceae)

  2025cites this paper
• The changing biodiversity of the Arctic flora in the Anthropocene.

  2025cites this paper
• Next-generation specimen digitization: capturing reflectance spectra from the world's herbaria for modeling plant biology across time, space, and taxa.

  2025cites this paper
• Computer vision species identification of lichens and bryophytes from biocrusts in Australian drylands

  2025cites this paper
• Documenting biodiversity with digital data: comparing and contrasting the efficacy of specimen-based and observation-based approaches.

  2025cites this paper
• Increasing Prevalence of Plant‐Fungal Symbiosis Across Two Centuries of Environmental Change

  2025cites this paper
• EcoWikiRS: Learning Ecological Representation of Satellite Images from Weak Supervision with Species Observations and Wikipedia

  2025cites this paper
• What ‘unexplored’ means: mapping regions with digitized natural history records to look for ‘biodiversity blindspots’

  2025cites this paper
• Revealing hidden extinction risks in China’s flora through dynamic habitat assessment

  2025cites this paper
• Proximity to research centers, fluvial accessibility, and dams presence drive sampling efforts for phytoplankton, zooplankton, and macrophytes in freshwater ecosystems

  2025cites this paper
• Long-term trends in global flowering phenology.

  2025cites this paper
• Bridging data silos to holistically model plant macrophenology.

  2025cites this paper
• When do citizen scientists record biodiversity? Non‐random temporal patterns of recording effort and associated factors

  2025cites this paper
• Long delays in identification and publication of naturalized species: a case study of introduced grasses in Hawai‘i

  2025cites this paper
• A vision of human–AI collaboration for enhanced biological collection curation and research

  2025cites this paper
• Herbarium data accurately predict the timing and duration of population‐level flowering displays

  2024influential citation
• Does genetic variation in controlled experiments predict phenology of wild plants?

  2024cites this paper
• Online herbaria databases allow testing the minimum residence time among invasive and non-invasive alien species

  2024cites this paper
• Synthesizing historical plant collections to identify priorities for future collection efforts and research applications

  2024cites this paper
• Sequencing historical RNA: unrealized potential to increase understanding of the plant tree of life.

  2024cites this paper
• Challenges in the establishment of a rare plant species monitoring program using community science volunteers

  2024cites this paper
• Leucheriapeteroana (Nassauvieae, Asteraceae), a new species of Leucheria endemic to the Andes of Central Chile, and insights into the systematics of Nassauviae

  2024cites this paper
• From Herbarium Specimens to Contemporary Surveys: Tracing the Extinction Dynamics and Performance of Endangered Plant Species in Central Germany

  2024cites this paper
• Instagram data for validating Nothofagus pumilio distribution mapping in the Southern Andes: A novel ground truthing approach

  2024cites this paper
• Incorporating citizen science into IUCN Red List assessments

  2024cites this paper
• Science behind herbarium and its importance in recent years

  2024cites this paper
• Predicting undetected native vascular plant diversity at a global scale

  2024cites this paper
• Using machine learning to link climate, phylogeny and leaf area in eucalypts through a 50‐fold expansion of leaf trait datasets

  2024cites this paper
• Gymnosperm collecting in China: Past, present, and future

  2024influential citation
• Herbarium specimens reveal links between leaf shape of Capsella bursa‐pastoris and climate

  2024cites this paper
• The Recent Environmental History, Attempted Restoration and Future Prospects of a Challenged Lobelia Pond in Northeastern Belgium

  2024cites this paper
• Continental-scale interactions of Australian showy mistletoes and their hosts.

  2024cites this paper
• Sampling Bias of Birds in the Pantanal Wetland: A Study Case with Records from Biological Collections

  2024cites this paper
• Data analysis of Melocactus (Cactaceae) virtual herbarium in the Caatinga biome: a synthesis of reproduction and geographical distribution

  2024cites this paper
• Big data, big problems? How to circumvent problems in biodiversity mapping and ensure meaningful results

  2024cites this paper
• Climatic and biogeographic factors show contrasted effects on continental and volcanic ISARs

  2024cites this paper
• Patterns and changes in the Nonnative Flora of Franklin County, Massachusetts

  2024cites this paper
• New records and conservation status of tree species from environmental licensing studies in highly human-modified areas in Bahia, northeastern Brazil

  2024cites this paper
• Herbarium specimens reveal links between Capsella bursa-pastoris leaf shape and climate

  2024cites this paper
• Geographic And Taxonomic Occurrence R‐based Scrubbing (gatoRs): An R package and workflow for processing biodiversity data

  2024cites this paper
• What “unexplored” means: Mapping undersampled regions in natural history collections

  2024cites this paper
• AI-based discovery of habitats from museum collections.

  2024cites this paper
• Balancing the risks of mating: biogeographic evidence of cleistogamy as a bet hedging strategy

  2024cites this paper
• Improving the accuracy of automated labeling of specimen images datasets via a confidence-based process

  2024cites this paper
• Ecological niche modeling for the prediction of suitable environments for Chrysodeixis chalcites (Noctuidae) in the contiguous United States

  2024cites this paper
• Analysis of the Spatial Distribution of Leguminosae Species in the State of Maranhão, Brazil

  2024cites this paper
• FloraTraiter: Automated parsing of traits from descriptive biodiversity literature

  2024cites this paper
• Modelling current and future potential distribution of medicinal orchids in Darjeeling eastern Himalaya

  2024cites this paper
• Top ten hazards to avoid when modeling species distributions: a didactic guide of assumptions, problems, and recommendations

  2024cites this paper
• The value of targeted biological surveys: An assessment of Australia's Bush Blitz programme

  2024cites this paper