Natural genetic variation in Arabidopsis: tools, traits and prospects for evolutionary ecology.

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Annals of Botany

• Publication date

  2007-06-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/AOB/MCL281PMID 17259228PMCID PMC3243570
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Genetics of Drought Adaptation in Arabidopsis thaliana II. Qtl Analysis of a New Mapping Population, Kas-1 × Tsu-1

  2008cited by this paper
• Evolutionary aspects of population structure for molecular and quantitative traits in the freshwater snail Radix balthica

  2006cited by this paper
• Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers

  2006influential reference
• Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range

  2006cited by this paper
• Characterization of the plant-specific BRX gene family reveals limited genetic redundancy despite high sequence conservation

  2006cited by this paper
• The genetics of plant metabolism

  2006cited by this paper
• Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis

  2006cited by this paper
• How to be early flowering: an evolutionary perspective.

  2006cited by this paper
• Vacuolar invertase regulates elongation of Arabidopsis thaliana roots as revealed by QTL and mutant analysis.

  2006cited by this paper
• Characterization of the Plant-Specific BREVIS RADIX Gene Family Reveals Limited Genetic Redundancy Despite High Sequence Conservation1

  2006cited by this paper
• The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana

  2006cited by this paper
• A Nonparametric Test Reveals Selection for Rapid Flowering in the Arabidopsis Genome

  2006cited by this paper
• The Gene Controlling the Quantitative Trait Locus EPITHIOSPECIFIER MODIFIER1 Alters Glucosinolate Hydrolysis and Insect Resistance in Arabidopsis[W]

  2006cited by this paper
• A Genome-Wide Survey of R Gene Polymorphisms in Arabidopsis[W]

  2006cited by this paper
• Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis

  2006cited by this paper
• Association Mapping With Single-Feature Polymorphisms

  2006cited by this paper
• Gene function beyond the single trait: natural variation, gene effects, and evolutionary ecology in Arabidopsis thaliana

  2005cited by this paper
• EVOLUTION OF THE REALIZED CLIMATIC NICHE IN THE GENUS: ARABIDOPSIS (BRASSICACEAE)

  2005cited by this paper
• The Pattern of Polymorphism in Arabidopsis thaliana

  2005influential reference
• Genome-Wide Association Mapping in Arabidopsis Identifies Previously Known Flowering Time and Pathogen Resistance Genes

  2005influential reference
• Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation.

  2005cited by this paper
• From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development.

  2005cited by this paper
• Molecular population genetics and the search for adaptive evolution in plants.

  2005cited by this paper
• Variation at two flowering time genes within and among populations of Arabidopsis thaliana: comparison with markers and traits.

  2005influential reference
• Natural Variation in Arabidopsis. How Do We Find the Causal Genes?

  2005cited by this paper
• How and when did Arabidopsis thaliana become highly self-fertilising.

  2005cited by this paper
• Role of FRIGIDA and FLOWERING LOCUS C in Determining Variation in Flowering Time of Arabidopsis1[w]

  2005influential reference
• Molecular population genetics of redundant floral-regulatory genes in Arabidopsis thaliana.

  2005cited by this paper
• Faculty Opinions recommendation of Haplotype structure and phenotypic associations in the chromosomal regions surrounding two Arabidopsis thaliana flowering time loci.

  2004influential reference
• Linkage Disequilibrium Mapping of Arabidopsis CRY2 Flowering Time Alleles Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY576055, AY576271.

  2004cited by this paper
• Genetic variability in natural populations of Arabidopsis thaliana in northern Europe

  2004cited by this paper
• Natural genetic variation in Arabidopsis identifies BREVIS RADIX, a novel regulator of cell proliferation and elongation in the root.

  2004cited by this paper
• Plant genomics: the third wave.

  2004cited by this paper
• Naturally occurring genetic variation in Arabidopsis thaliana.

  2004influential reference
• A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA.

  2004cited by this paper
• Efficient discovery of DNA polymorphisms in natural populations by Ecotilling.

  2004cited by this paper
• Conceptual issues in local adaptation

  2004cited by this paper
• Haplotype Structure and Phenotypic Associations in the Chromosomal Regions Surrounding Two Arabidopsis thaliana Flowering Time Loci Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY781906, AY785055.

  2004cited by this paper
• A Novel Cost of R Gene Resistance in the Presence of Disease

  2004influential reference
• The need for winter in the switch to flowering.

  2003cited by this paper
• Attenuation of FLOWERING LOCUS C activity as a mechanism for the evolution of summer-annual flowering behavior in Arabidopsis

  2003influential reference
• Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana

  2003influential reference
• Flower Visitors in a Natural Population of Arabidopsis thaliana

  2003cited by this paper
• Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.

  2003cited by this paper
• Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits

  2003cited by this paper
• Structure of linkage disequilibrium in plants.

  2003cited by this paper
• Genomic approaches to analyzing natural variation in Arabidopsis thaliana.

  2003cited by this paper
• Evolutionary dynamics of an Arabidopsis insect resistance quantitative trait locus

  2003cited by this paper
• Analysis of the Molecular Basis of Flowering Time Variation in Arabidopsis Accessions1[w]

  2003influential reference
• The Impact of Genomics on the Study of Natural Variation in Arabidopsis

  2003influential reference
• Large-scale identification of single-feature polymorphisms in complex genomes.

  2003cited by this paper
• SELECTION IN A MODEL SYSTEM: ECOLOGICAL GENETICS OF FLOWERING TIME IN ARABIDOPSIS THALIANA

  2003cited by this paper
• GERMINATION TIMING INFLUENCES NATURAL SELECTION ON LIFE-HISTORY CHARACTERS IN ARABIDOPSIS THALIANA

  2002cited by this paper
• SHADE‐INDUCED PLASTICITY AND ITS ECOLOGICAL SIGNIFICANCE IN WILD POPULATIONS OF ARABIDOPSIS THALIANA

  2002cited by this paper
• The control of natural variation in cytosine methylation in Arabidopsis.

  2002cited by this paper
• The genetics of plant morphological evolution.

  2002cited by this paper
• Signature of balancing selection in Arabidopsis

  2002cited by this paper
• Taxonomy and Phylogeny of Arabidopsis (Brassicaceae)

  2002cited by this paper
• The extent of linkage disequilibrium in Arabidopsis thaliana

  2002cited by this paper
• Sequence variation and haplotype structure surrounding the flowering time locus FRI in Arabidopsis thaliana.

  2002cited by this paper
• Arabidopsis, the Rosetta stone of flowering time?

  2002cited by this paper
• A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2

  2002cited by this paper
• Biogeography of Arabidopsis thaliana (L.) Heynh. (Brassicaceae)

  2002influential reference
• Arabidopsis Map-Based Cloning in the Post-Genome Era

  2002cited by this paper
• Bay-0 × Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis

  2002cited by this paper
• Arabidopsis thaliana and its wild relatives: a model system for ecology and evolution

  2001cited by this paper
• The Arabidopsis Epithiospecifier Protein Promotes the Hydrolysis of Glucosinolates to Nitriles and Influences Trichoplusia ni Herbivory Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010261.

  2001cited by this paper
• Natural variation in light sensitivity of Arabidopsis

  2001cited by this paper
• Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.

  2001cited by this paper
• A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2

  2001cited by this paper
• Gene Duplication in the Diversification of Secondary Metabolism: Tandem 2-Oxoglutarate–Dependent Dioxygenases Control Glucosinolate Biosynthesis in Arabidopsis

  2001cited by this paper
• A gene controlling variation in Arabidopsis glucosinolate composition is part of the methionine chain elongation pathway.

  2001influential reference
• Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe

  2000cited by this paper
• Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics.

  2000cited by this paper
• Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

  2000cited by this paper
• The Intraspecific Phylogenetics of Arabidopsis thaliana in Worldwide Populations

  2000cited by this paper
• Seed and molecular resources for Arabidopsis.

  2000cited by this paper
• FLOWERING LOCUS C Encodes a Novel MADS Domain Protein That Acts as a Repressor of Flowering

  1999cited by this paper
• Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis

  1999cited by this paper
• AFLP analysis of genetic diversity within and between Arabidopsis thaliana ecotypes

  1999cited by this paper
• Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana.

  1999cited by this paper
• DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis.

  1999cited by this paper
• The effect of seed and rosette cold treatment on germination and flowering time in some Arabidopsis thaliana (Brassicaceae) ecotypes.

  1999cited by this paper
• Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function.

  1998cited by this paper
• Genetic variation within and among populations of Arabidopsis thaliana.

  1998cited by this paper
• A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing.

  1997cited by this paper
• Meta-analysis: synthesizing research findings in ecology and evolution.

  1995cited by this paper
• A Test of the Adaptive Plasticity Hypothesis Using Transgenic and Mutant Plants Disabled in Phytochrome-Mediated Elongation Responses to Neighbors

  1995cited by this paper
• Molecular basis of the cauliflower phenotype in Arabidopsis

  1995cited by this paper
• Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance

  1995cited by this paper
• The phytochrome apoprotein family inArabidopsis is encoded by five genes: the sequences and expression ofPHYD andPHYE

  1994cited by this paper
• The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats.

  1994cited by this paper
• The Evolution of Life Histories

  1994cited by this paper
• The Evolution of Life Histories

  1994cited by this paper
• Population genetic structure and outcrossing rate of Arabidopsis thaliana (L.) Heynh.

  1989cited by this paper
• Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family.

  1989cited by this paper
• Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

  1989cited by this paper
• The biology and chemistry of the Cruciferae

  1976cited by this paper

• BRASSINAZOLE RESISTANT 1 delays photoperiodic flowering by repressing CONSTANS transcription.

  2025cites this paper
• Heat stress induces unreduced male gamete formation by targeting meiocyte translation

  2025cites this paper
• Transcriptome analysis reveals biosynthesis and regulation of flavonoid in common bean seeds during grain filling

  2024cites this paper
• Screening for Genetic Variation in the Circadian Clock in Barley Landraces from Palestine

  2024cites this paper
• ACCELERATED CELL DEATH 6 is a crucial genetic factor shaping the natural diversity of age- and salicylic acid-induced leaf senescence in Arabidopsis.

  2024cites this paper
• Heat stress impairs centromere structure and segregation of meiotic chromosomes in Arabidopsis

  2024cites this paper
• Epigenetic inheritance mediates phenotypic diversity in natural populations

  2024cites this paper
• Natural genetic variation and negative density effects in plant–nematode interactions

  2023cites this paper
• Plant size directly correlates with water use efficiency in Arabidopsis.

  2023cites this paper
• Genetic architecture of variation in Arabidopsis thaliana rosettes

  2022cites this paper
• Experimental demonstration and pan-structurome prediction of climate-associated riboSNitches in Arabidopsis

  2022cites this paper
• Using natural variation to understand plant responses to iron availability.

  2021cites this paper
• Epigenetic inheritance mediates phenotypic diversity in natural 1 populations 2 3

  2021cites this paper
• Probing natural variation of IRE1 expression and endoplasmic reticulum stress responses in Arabidopsis accessions

  2020cites this paper
• Synchronization of senescence and desynchronization of flowering in Arabidopsis thaliana

  2020cites this paper
• Disease Resistance in Wheat and Its Relatives

  2019cites this paper
• Phenotypic and genome-wide association with the local environment of Arabidopsis

  2019cites this paper
• Identification des bases génétiques associées à la variation naturelle des interactions plante-plante chez Arabidopsis thaliana

  2019cites this paper
• Functional genomic approaches to improve crop plant heat stress tolerance

  2019cites this paper
• Yeast Strain Optimization for Enological Applications

  2019cites this paper
• Effects of natural solar UV-B radiation on three Arabidopsis accessions are strongly affected by seasonal weather conditions.

  2019cites this paper
• Induced mutations alter patterns of quantitative variation, phenotypic integration, and plasticity to elevated CO2 in Arabidopsis thaliana

  2018cites this paper
• To defend or to grow: lessons from Arabidopsis C24

  2018cites this paper
• Natural genetic variation in stomatal response can help to increase acclimation of plants to dried environments

  2018cites this paper
• Genetic dissection of metabolite variation in Arabidopsis seeds: evidence for mQTL hotspots and a master regulatory locus of seed metabolism

  2017cites this paper
• Differences in soil zinc availability as a driver of natural selection in Arabidopsis thaliana and rhizosphere bacteria

  2017cites this paper
• Effects of gene multiplication on flowering time regulation in spring and winter varieties of Brassica napus

  2017cites this paper
• Effects Of Plasticity And Hybridization On Life History Traits In Arabidopsis Thaliana Ecotypes

  2017cites this paper
• Differential Splicing of FLM Partially Explains High-Temperature-Induced Flowering Time Plasticity in Wild Ecotypes of Arabidopsis thaliana

  2017cites this paper
• Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon

  2017cites this paper
• Genetic basis of natural variation in photoprotection in Arabidopsis

  2017cites this paper
• Plant Growth-Promoting Fungi (PGPF): Phytostimulation and Induced Systemic Resistance

  2017cites this paper
• Genetic diversity of disease resistance genes in foxtail millet (Setaria italica L.)

  2017cites this paper
• Natural variation in life history strategy of Arabidopsis thaliana determines stress responses to drought and insects of different feeding guilds

  2017cites this paper
• Selection during Early Life Stages and Local Adaptation in Arabidopsis thaliana

  2016cites this paper
• Using Phenomic Analysis of Photosynthetic Function for Abiotic Stress Response Gene Discovery

  2016cites this paper
• Tissue Culture as a Source of Replicates in Nonmodel Plants: Variation in Cold Response in Arabidopsis lyrata ssp. petraea

  2016cites this paper
• Tissue culture as a source of replicates in non-model plants: variation in cold tolerance in Arabidopsis lyrata ssp. petraea

  2016cites this paper
• Genome-Wide Association Study in Arabidopsis thaliana of Natural Variation in Seed Oil Melting Point: A Widespread Adaptive Trait in Plants.

  2016cites this paper
• AraPheno: a public database for Arabidopsis thaliana phenotypes

  2016cites this paper
• Use of Natural Variation in Arabidopsis thaliana to Study Adaptation

  2015cites this paper
• Potassium Retention under Salt Stress Is Associated with Natural Variation in Salinity Tolerance among Arabidopsis Accessions

  2015cites this paper
• Sources naturelles de la résistance contre les nématodes à galles Meloidogyne javanica chez la plante modèle Arabidopsis thaliana.

  2015cites this paper
• Moving toward an optimum: The adaptation genetics of Arabidopsis thaliana

  2015cites this paper
• Molecular systems governing leaf growth: from genes to networks.

  2015cites this paper
• The impact of changes in mitochondrial malate dehydrogenase abundance on the respiratory metabolism of Arabidopsis thaliana mutants and ecotypes

  2015cites this paper
• Genetic resources for quantitative trait analysis: novelty and efficiency in design from an Arabidopsis perspective.

  2014cites this paper
• Génomique écologique de la réponse à la compétition chez Arabidopsis thaliana

  2014cites this paper
• Natural Variation as a Tool to Investigate Nutrient Use Efficiency in Plants

  2014cites this paper
• An evolutionary and developmental approach toward understanding of growth variations of two closely related dwarfism of Galium verum

  2014cites this paper
• The role of glucosinolates and the jasmonic acid pathway in resistance of Arabidopsis thaliana against molluscan herbivores

  2014cites this paper
• Farinose flavonoids are associated with high freezing tolerance in fairy primrose (Primula malacoides) plants.

  2014cites this paper
• Leaf traits associated with drought adaptation in faba bean (Vicia faba L.)

  2014cites this paper
• Signal transduction pathway(s) in guard cells after prolonged exposure to low vapour pressure deficit

  2014cites this paper
• Natural variation in stomatal response to closing stimuli among Arabidopsis thaliana accessions after exposure to low VPD as a tool to recognize the mechanism of disturbed stomatal functioning

  2014cites this paper
• Investigation of the geographical scale of adaptive phenological variation and its underlying genetics in Arabidopsis thaliana

  2013cites this paper
• Genetic Variation in Soybean at the Maturity Locus E4 Is Involved in Adaptation to Long Days at High Latitudes

  2013cites this paper
• Evidence for parallel adaptation to climate across the natural range of Arabidopsis thaliana

  2013cites this paper
• Genetic architecture of flowering time differentiation between locally adapted populations of Arabidopsis thaliana.

  2013cites this paper
• Variations dans les réseaux de régulation chez une levure œnologique et impacts sur les propriétés fermentaires

  2013cites this paper
• Determination of the genetic basis of seed oil composition and melting point—adaptive quantitative traits—and their fitness effects in Arabidopsis thaliana

  2013cites this paper
• Adaptation to growing season length in the perennial Arabidopsis lyrata

  2013cites this paper
• The response of Brassica hosts to multiple isolates of Sclerotinia sclerotiorum

  2013cites this paper
• Flowering Newsletter bibliography for 2007

  2013cites this paper
• Identification of Novel Loci Regulating Interspecific Variation in Root Morphology and Cellular Development in Tomato1[W][OA]

  2013cites this paper
• Plant basal resistance: genetics, biochemistry, and impacts on plant-biotic interactions

  2012cites this paper
• Genomics, Adaptation, and the Evolution of Plant Form

  2012cites this paper
• Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics 1(W)(OA)

  2012cites this paper
• Natural variation among Arabidopsis accessions reveals malic acid as a key mediator of Nickel (Ni) tolerance

  2012cites this paper
• Evidence for natural selection acting on genes affecting lignin and cellulose biosynthesis inEucalyptus globulus

  2012cites this paper
• Genome-Wide Patterns of Arabidopsis Gene Expression in Nature

  2012cites this paper
• Structured patterns in geographic variability of metabolic phenotypes in Arabidopsis thaliana

  2012cites this paper
• What does Arabidopsis natural variation teach us (and does not teach us) about adaptation in plants?

  2011cites this paper
• Natural Variation in Arabidopsis: From Molecular Genetics to Ecological Genomics1[W][OA]

  2011cites this paper
• Genetic and environmental modulation of phenotypic variation in Arabidopsis thaliana

  2011cites this paper
• Genome-wide association studies in plants: the missing heritability is in the field

  2011cites this paper
• The Many Phases of Phenology : Geographic and Inter-Specific Differences in Phenological Between-Year Variation

  2011cites this paper
• Elucidating matrix protein import and beta-oxidation pathways in plant peroxisomes

  2011cites this paper
• Source verification of mis-identified Arabidopsis thaliana accessions.

  2011cites this paper
• Adaptive evolution of the Populus tremula photoperiod pathway

  2011cites this paper
• Regulation of organ development by auxin and the SHI/STY-family of transcriptional regulators

  2011cites this paper
• articleChromosomal loci important for cotyledon opening under UV-B in Arabidopsis thaliana

  2010cites this paper
• STER1, a novel receptor-like kinase, functions in MAMP signalling in Arabidopsis

  2010cites this paper
• A complex genetic network involving a broad-spectrum locus and strain-specific loci controls resistance to different pathotypes of Aphanomyces euteiches in Medicago truncatula

  2010cites this paper
• Genetic mapping of natural variation in a shade avoidance response: ELF3 is the candidate gene for a QTL in hypocotyl growth regulation

  2010cites this paper
• Natural variation in priming of basal resistance: from evolutionary origin to agricultural exploitation.

  2010cites this paper
• Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping

  2010cites this paper
• Ethylene-induced hyponastic growth in Arabidopsis thaliana is controlled by ERECTA.

  2010cites this paper
• Plant Microevolution and Conservation in Human-influenced Ecosystems

  2009cites this paper
• Evolutionary Process of the Genomic Sequence Around the 100 Map Unit of Chromosome 1 in Arabidopsis thaliana

  2009cites this paper
• Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology

  2009influential citation
• QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines

  2009cites this paper
• QTL analysis of leaf architecture

  2009cites this paper
• Regulation of Transpiration to Improve Crop Water Use

  2009cites this paper
• Seasonal flowering and evolution: the heritage from Charles Darwin.

  2009cites this paper
• Altering FVE/MSI4 results in a substantial increase of biomass in Arabidopsis—the functional analysis of an ontogenesis accelerator

  2009cites this paper
• Evolutionary change in flowering phenology in the iteroparous herb Beta vulgaris ssp. maritima: a search for the underlying mechanisms.

  2009cites this paper
• Evolutionary change in flowering phenology in the iteroparous herb Beta vulgaris ssp. maritima: a search for the underlying mechanisms

  2009cites this paper
• The genetic and molecular basis of natural variation for plant growth and related traits in Arabidopsis thaliana

  2009cites this paper
• Genomes, diversity and resistance gene analogues in Musa species

  2008cites this paper