Identification of Acetate- or Methanol-Assimilating Bacteria under Nitrate-Reducing Conditions by Stable-Isotope Probing

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Microbial Ecology

• Publication date

  2006-08-05

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00248-006-9071-7PMID 16897304
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Dimorphic Prosthecate Bacteria: The Genera Caulobacter, Asticcacaulis, Hyphomicrobium, Pedomicrobium, Hyphomonas and Thiodendron

  2006cited by this paper
• Denaturing gradient gel electrophoresis (DGGE) in microbial ecology.

  2004cited by this paper
• Use of Stable-Isotope Probing, Full-Cycle rRNA Analysis, and Fluorescence In Situ Hybridization-Microautoradiography To Study a Methanol-Fed Denitrifying Microbial Community

  2004cited by this paper
• Salinity Decreases Nitrite Reductase Gene Diversity in Denitrifying Bacteria of Wastewater Treatment Systems

  2004cited by this paper
• Genetic Characterization of the Nitrate Reducing Community Based on narG Nucleotide Sequence Analysis

  2003cited by this paper
• Bacterial Diversity in a Marine Methanol-Fed Denitrification Reactor at the Montreal Biodome, Canada

  2003cited by this paper
• Respiration of 13C-Labeled Substrates Added to Soil in the Field and Subsequent 16S rRNA Gene Analysis of 13C-Labeled Soil DNA

  2003cited by this paper
• Molecular Diversity of Denitrifying Genes in Continental Margin Sediments within the Oxygen-Deficient Zone off the Pacific Coast of Mexico

  2003cited by this paper
• Nitric Oxide Reductase (norB) Genes from Pure Cultures and Environmental Samples

  2003cited by this paper
• Evaluation of PCR Amplification Bias by Terminal Restriction Fragment Length Polymorphism Analysis of Small-Subunit rRNA and mcrA Genes by Using Defined Template Mixtures of Methanogenic Pure Cultures and Soil DNA Extracts

  2003cited by this paper
• Nitrite reductase genes in halobenzoate degrading denitrifying bacteria.

  2003cited by this paper
• Characterization of an Autotrophic Sulfide-Oxidizing Marine Arcobacter sp. That Produces Filamentous Sulfur

  2002cited by this paper
• Detection and Diversity of Expressed Denitrification Genes in Estuarine Sediments after Reverse Transcription-PCR Amplification from mRNA

  2002influential reference
• RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny

  2002cited by this paper
• Quantification of functional groups in activated sludge by microautoradiography.

  2002cited by this paper
• Diversity of Nitrite Reductase (nirK and nirS) Gene Fragments in Forested Upland and Wetland Soils

  2002cited by this paper
• Phylogenetic Identification and Substrate Uptake Patterns of Sulfate-Reducing Bacteria Inhabiting an Oxic-Anoxic Sewer Biofilm Determined by Combining Microautoradiography and Fluorescent In Situ Hybridization

  2002cited by this paper
• The genus paracoccus

  2002cited by this paper
• Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing.

  2002cited by this paper
• Identification of the Functionally Active Methanotroph Population in a Peat Soil Microcosm by Stable-Isotope Probing

  2002cited by this paper
• Bacterial community composition and function in sewage treatment systems.

  2002cited by this paper
• Community Structure of Denitrifiers, Bacteria, and Archaea along Redox Gradients in Pacific Northwest Marine Sediments by Terminal Restriction Fragment Length Polymorphism Analysis of Amplified Nitrite Reductase (nirS) and 16S rRNA Genes

  2001cited by this paper
• Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas

  2001cited by this paper
• 13C incorporation into DNA as a means of identifying the active components of ammonia‐oxidizer populations

  2001cited by this paper
• Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA.

  2000cited by this paper
• Stable-isotope probing as a tool in microbial ecology

  2000cited by this paper
• Combination of Fluorescent In Situ Hybridization and Microautoradiography—a New Tool for Structure-Function Analyses in Microbial Ecology

  1999cited by this paper
• Diversity of Nitrous Oxide Reductase (nosZ) Genes in Continental Shelf Sediments

  1999cited by this paper
• Microbial degradation of nitrobenzene and mono-nitrophenol by bacteria enriched from municipal activated sludge.

  1999cited by this paper
• PCR Detection of Genes Encoding Nitrite Reductase in Denitrifying Bacteria

  1999cited by this paper
• Detection of genes for periplasmic nitrate reductase in nitrate respiring bacteria and in community DNA.

  1999cited by this paper
• Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments.

  1998cited by this paper
• Development of PCR Primer Systems for Amplification of Nitrite Reductase Genes (nirK and nirS) To Detect Denitrifying Bacteria in Environmental Samples

  1998cited by this paper
• Cell biology and molecular basis of denitrification.

  1997cited by this paper
• Phylogenetic analysis and in situ identification of bacteria in activated sludge

  1997cited by this paper
• Denitrification in a methanol-fed fixed-bed reactor. Part 1: Physico-chemical and biological characterization

  1997cited by this paper
• Denitrification in a methanol-fed fixed-bed reactor. Part 2: Composition and ecology of the bacterial community in the biofilms

  1997cited by this paper
• Application of microautoradiography to the study of substrate uptake by filamentous microorganisms in activated sludge

  1997cited by this paper
• Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures

  1996cited by this paper
• TreeView: an application to display phylogenetic trees on personal computers

  1996cited by this paper
• Diversity and structure of hyphomicrobium populations in a sewage treatment plant and its adjacent receiving lake

  1996cited by this paper
• Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria

  1996cited by this paper
• Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms

  1996cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• The genus Comamonas.

  1992cited by this paper
• The Prokaryotes. A handbook on the biology of bacteria: ecophysiology, isolation, identification, applications. Volumes I-IV.

  1992cited by this paper
• Full-Scale Application of Nitrogen Removal with Methanol as Carbon Source

  1992cited by this paper
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987cited by this paper
• Denitrification of nitrate and nitric acid with methanol as carbon source

  1985cited by this paper
• The Pacific Coast of Mexico

  1955cited by this paper

• Application of stable isotopes in revealing mechanisms of pollutants biodegradation in wastewater treatment: A review

  2026cites this paper
• Strength under pressure: Aerobic granular sludge (AGS) dynamics in sequencing batch reactors exposed to per- and polyfluoroalkyl substances (PFAS).

  2025cites this paper
• Novel electrodialysis aerobic bioreactor (EDABR) enables efficient nitrate removal and enhanced bacterial denitrification

  2025cites this paper
• Bioremediation potential of the consortium of indigenous microbial isolates in degrading multiwall carbon nanotube (MWCNT) present in contaminated water

  2025cites this paper
• Divergent biofilm and free-living microbial communities on Phragmites australis and in plankton across an eutrophication gradient in the Great Masurian Lakes (Poland)

  2025cites this paper
• Biofilm development on fractured rock in oligotrophic nitrate-rich groundwater: An in-situ bioreactor study.

  2025cites this paper
• Mechanistic insights into nitrogen removal performance and electron competition with mixed electron donor supply in a biofilm electrode reactor

  2025cites this paper
• Research on the application of heterotrophic nitrification-aerobic denitrification bacteria in membrane bioreactor (MBR)

  2024cites this paper
• Relating the carbon sources to denitrifying community in full-scale wastewater treatment plants.

  2024cites this paper
• Cost Reduction in the Process of Biological Denitrification by Choosing Traditional or Alternative Carbon Sources

  2024cites this paper
• Methane-Driven Perchlorate Reduction by a Microbial Consortium.

  2024cites this paper
• The effect of carbon source produced by modified corncob fermentation on denitrification

  2024cites this paper
• Application of flow airlift fluidized bed (CAFB) - Aerobic denitrification bioreactor using polycaprolactone (PADR) as organic carbon source and biofilm carrier for synthetic marine aquaculture wastewater treatment

  2024cites this paper
• Aerobic and anoxic utilization of organic matter for flexible nitrite supply in nutrient conversion pathways based on anaerobic ammonium oxidation: Microbial interactive mechanism.

  2024cites this paper
• New insights into the spatial variability of microbial diversity and density in peatlands exposed to various electron acceptors with an emphasis on methanogenesis and CO2 fluxes

  2024cites this paper
• Iron oxidation coupled with nitrate reduction affects the acetate-assimilating microbial community structure elucidated by stable isotope probing in flooded paddy soil

  2023cites this paper
• Improving denitrification performance of biofilm technology with salt-tolerant denitrifying bacteria agent for treating high-strength nitrate and sulfate wastewater from lab-scale to pilot-scale.

  2023cites this paper
• Combined pot experiments and subsequent DNA-SIP incubations reveal a core microbiota involved in modulating crop nitrogen uptake derived from soil

  2023cites this paper
• Impact of instrumentation reliability on mainstream suspended partial denitrification–anammox (PdNA)

  2023cites this paper
• Preemptive methodology determining operational parameters for mainstream PN: Evaluating biokinetics of three functional microbiome in seeding sludge

  2023cites this paper
• Long-term effect of acetate and biochar addition on enrichment and activity of denitrifying anaerobic methane oxidation microbes.

  2023cites this paper
• Bacterial community driven nitrogen cycling in coastal sediments of intertidal transition zone.

  2023cites this paper
• Assessment of prokaryotic communities in Southwestern Atlantic deep-sea sediments reveals prevalent methanol-oxidising Methylomirabilales

  2023cites this paper
• Influence of metabolism and microbiology on organic micropollutants biotransformation in anoxic heterotrophic reactors.

  2022cites this paper
• Electrodialysis ion-exchange membrane bioreactor (EDIMB) to remove nitrate from water: Optimization of operating conditions and kinetics analysis.

  2022cites this paper
• Analysis and Optimization of Simultaneous Nitrification, Denitrification, and Phosphorus Removal in Sequencing Batch Reactors for Sewage Treatment at High-Altitude Areas

  2022cites this paper
• Effect of nitrous oxide (N2O) on the structure and function of nitrogen-oxide reducing microbial communities.

  2022cites this paper
• Effect of Aluminum on Full-Scale Biological Treatment System: Sludge Performance and the Microbial Community Structure

  2022influential citation
• Research advances of microbial denitrification and application in black and odorous water

  2021cites this paper
• Achieving advanced nitrogen removal in a novel partial denitrification/anammox-nitrifying (PDA-N) biofilter process treating low C/N ratio municipal wastewater.

  2021cites this paper
• Characterization of nirS- and nirK-containing communities and potential denitrification activity in paddy soil from eastern China

  2021cites this paper
• Microbial Communities and Nitrogen-Utilizing Bacteria of Rotating Biological Contactors and Activated Sludge Treating Public Sewage and Night Soil/Johkasou Sludge

  2021cites this paper
• Metagenomic Insights Into Functional and Taxonomic Compositions of an Activated Sludge Microbial Community Treating Leachate of a Completed Landfill: A Pathway-Based Analysis

  2021cites this paper
• Evaluation of natural attenuation-potential and biogeochemical analysis in nitrate contaminated bedrock aquifers by carbon source injection.

  2021cites this paper
• Regional discrepancy of microbial community structure in activated sludge system from Chinese WWTPs based on high-throughput 16S rDNA sequencing.

  2021cites this paper
• Recovery trajectories and community resilience of biofilms in receiving rivers after wastewater treatment plant upgrade.

  2021cites this paper
• Organic carbon determines nitrous oxide consumption activity of clade I and II nosZ bacteria: Genomic and biokinetic insights.

  2021cites this paper
• Analysis of microbial community biodiversity in activated sludge from a petrochemical plant

  2021influential citation
• Survival strategy of comammox bacteria in a wastewater nutrient removal system with sludge fermentation liquid as additional carbon source.

  2021cites this paper
• 16S rRNA Gene Metabarcoding Indicates Species-Characteristic Microbiomes in Deep-Sea Benthic Foraminifera

  2021cites this paper
• Efficient nitrate and perchlorate removal from aqueous solution via a novel electro-dialysis ion-exchange membrane bioreactor

  2021cites this paper
• Distinct functional microbial communities mediating the heterotrophic denitrification in response to the excessive Fe(II) stress in groundwater under wheat-rice stone and rock phosphate amendments.

  2020cites this paper
• Understanding complete ammonium removal mechanism in single-chamber microbial fuel cells based on microbial ecology.

  2020cites this paper
• Promising carbon utilization for nitrogen recovery in low strength wastewater treatment: Ammonia nitrogen assimilation, protein production and microbial community structure.

  2020cites this paper
• Co-association of Two nir Denitrifiers Under the Influence of Emergent Macrophytes

  2020cites this paper
• XIN ZOU

  2020cites this paper
• Different acetonitrile degraders and degrading genes between anaerobic ammonium oxidation and sequencing batch reactor as revealed by stable isotope probing and magnetic-nanoparticle mediated isolation.

  2020cites this paper
• Mixed carbon source improves deep denitrification performance in up-flow anaerobic sludge bed reactor.

  2020cites this paper
• Effect of operational strategies on the rapid start-up of nitrogen removal aerobic granular system with dewatered sludge as inoculant.

  2020cites this paper
• A novel method to remove nitrogen from reject water in wastewater treatment plants using a methane- and methanol-dependent bacterial consortium.

  2020cites this paper
• Stable-isotopic and metagenomic analyses reveal metabolic and microbial link of aerobic methane oxidation coupled to denitrification at different O2 levels.

  2020cites this paper
• Startup and stable operation of advanced continuous flow reactor and the changes of microbial communities in aerobic granular sludge.

  2020cites this paper
• Impact of NaCl, nitrate and temperature on the microbial community of a methanol-fed, denitrifying marine biofilm

  2019cites this paper
• Enrichment, isolation, and characterization of high-affinity N2O-reducing bacteria in a gas-permeable membrane reactor.

  2019cites this paper
• Linking the nitrous oxide production and mitigation with the microbial community in wastewater treatment: A review

  2019cites this paper
• A Review on Anaerobic Co-Digestion with a Focus on the Microbial Populations and the Effect of Multi-Stage Digester Configuration

  2019cites this paper
• Pilot-scale investigation on nutrient removal characteristics of mineral-rich aerobic granular sludge: Identification of uncommon mechanisms.

  2019cites this paper
• Pentachlorophenol alters the acetate-assimilating microbial community and redox cycling in anoxic soils

  2019cites this paper
• Acidogenic phosphorus recovery from the wastewater sludge of the membrane bioreactor systems with different iron-dosing modes.

  2019cites this paper
• Enhancement of rice bran as carbon and microbial sources on the nitrate removal from groundwater

  2019cites this paper
• Environmental filtering: A case of bacterial community assembly in soil

  2019cites this paper
• Development of a Combined Aerobic–Anoxic and Methane Oxidation Bioreactor System Using Mixed Methanotrophs and Biogas for Wastewater Denitrification

  2019cites this paper
• Microbial community structure and dynamics in wastewater treatment over a year

  2019influential citation
• Temporal variation of bacterial population and response to physical and chemical parameters along a petrochemical industry wastewater treatment plant.

  2019cites this paper
• The link between nitrous oxide emissions, microbial community profile and function from three full-scale WWTPs.

  2019cites this paper
• Characterizations of dissolved organic matter and bacterial community structures in rice washing drainage (RWD)-based synthetic groundwater denitrification.

  2019cites this paper
• Hydrodynamic shear force shaped the microbial community and function in the aerobic granular sequencing batch reactors for low carbon to nitrogen (C/N) municipal wastewater treatment.

  2019cites this paper
• Dynamics of a methanol-fed marine denitrifying biofilm: 2—impact of environmental changes on the microbial community

  2019influential citation
• pH control and microbial community analysis with HCl or CO2 addition in H2-based autotrophic denitrification.

  2019cites this paper
• Simultaneous nitrification, denitrification and phosphorus removal in aerobic granular sequencing batch reactors with high aeration intensity: Impact of aeration time.

  2018cites this paper
• Identification of active denitrifiers by DNA‐stable isotope probing and amplicon sequencing reveals Betaproteobacteria as responsible for attenuation of nitrate contamination in a low impacted aquifer

  2018cites this paper
• Structure and assembly cues for rhizospheric nirK- and nirS-type denitrifier communities in long-term fertilized soils

  2018cites this paper
• Effect of no carbohydrate addition on water quality, growth performance and microbial community in water‐reusing biofloc systems for tilapia production under high‐density cultivation

  2018cites this paper
• Simultaneous nitrification, denitrification and phosphorus removal in an aerobic granular sequencing batch reactor with mixed carbon sources: reactor performance, extracellular polymeric substances and microbial successions

  2018cites this paper
• An integrated membrane bioreactor system with iron-dosing and side-stream co-fermentation for enhanced nutrient removal and recovery: System performance and microbial community analysis.

  2018cites this paper
• Roxarsone exposure jeopardizes nitrogen removal and regulates bacterial community in biological sequential batch reactors.

  2018cites this paper
• Revised ISMEJ-10-00866 OA Identification and Isolation of Active N 2 O Reducers in Rice Paddy Soil

  2018cites this paper
• Effect of Fe(II) on reactivity of heterotrophic denitrifiers in the remediation of nitrate- and Fe(II)-contaminated groundwater.

  2018cites this paper
• Effect of different carbon sources on denitrification performance, microbial community structure and denitrification genes.

  2018cites this paper
• Perchlorate bioreduction linked to methane oxidation in a membrane biofilm reactor: Performance and microbial community structure.

  2018cites this paper
• PHBV polymer supported denitrification system efficiently treated high nitrate concentration wastewater: Denitrification performance, microbial community structure evolution and key denitrifying bacteria.

  2018cites this paper
• Effects of different irrigation methods on nitrous oxide emissions and ammonia oxidizers microorganisms in greenhouse tomato fields

  2018cites this paper
• Application and Characterization of Anaerobic Ammonium Oxidation (Anammox) Process to Treat Sidestream and Mainstream Wastewaters: Lab-scale and Full-scale Studies

  2018cites this paper
• Microbial Memory Response: Observing History-Dependent Adaptation to Repeated Exposures of Emulsified Vegetable Oil in a Contaminated Aquifer

  2018cites this paper
• Performance and microbial community analysis of a novel DEAMOX based on partial-denitrification and anammox treating ammonia and nitrate wastewaters.

  2017cites this paper
• Instructions for use Title Identification and isolation of active N 2 O reducers in rice paddy soil

  2017cites this paper
• Efficacy of acetate-amended biostimulation for uranium sequestration: Combined analysis of sediment/groundwater geochemistry and bacterial community structure

  2017cites this paper
• Characterisation of methylotrophs in the rhizosphere

  2017cites this paper
• Denitrification in the Presence of Chlorophenols: Progress and Prospects

  2017cites this paper
• Performance and microbial population dynamics during stable operation and reactivation after extended idle conditions in an aerobic granular sequencing batch reactor.

  2017cites this paper
• Establishment and calibration of consensus process model for nitrous oxide dynamics in water quality engineering

  2017cites this paper
• Physical and physiological properties of membrane-aerated and membrane-supported biofilms PM: Physical and physiological properties of membrane-aerated and membrane-supported biofilms

  2017cites this paper
• Comparison of microbial communities in different sulfur-based autotrophic denitrification reactors

  2016cites this paper
• Methylophilaceae and Hyphomicrobium as target taxonomic groups in monitoring the function of methanol-fed denitrification biofilters in municipal wastewater treatment plants

  2016influential citation
• Targeted metagenomics of active microbial populations with stable-isotope probing.

  2016cites this paper
• New insights into the key microbial phylotypes of anaerobic sludge digesters under different operational conditions.

  2016cites this paper
• Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems.

  2016cites this paper
• Bioremediation of nitrate and Fe(II) combined contamination in groundwater by heterotrophic denitrifying bacteria and microbial community analysis

  2016cites this paper
• Production of unburned calcium silicon filter material (UCSFM) from oyster shell and its performance investigation in an A/O integrated biological aerated filter reactor (A/O-BAF)

  2016cites this paper
• Identification of growing bacteria during litter decomposition in freshwater through H218O quantitative stable isotope probing.

  2016influential citation