Sequencing Bands of Ribosomal Intergenic Spacer Analysis Fingerprints for Characterization and Microscale Distribution of Soil Bacterium Populations Responding to Mercury Spiking

No abstract is available for this paper.

• Publication year

  2000

• Venue

  Applied and Environmental Microbiology

• Publication date

  2000-12-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/AEM.66.12.5334-5339.2000PMID 11097911PMCID PMC92465
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Mercury-resistant plasmids in bacteria from a mercury and antimony deposit area

  2004cited by this paper
• Detection of heavy metal ion resistance genes in Gram-positive and Gram-negative bacteria isolated from a lead-contaminated site

  2004cited by this paper
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment.

  2000cited by this paper
• rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria

  2000cited by this paper
• A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints.

  2000influential reference
• Heterogeneous Cell Density and Genetic Structure of Bacterial Pools Associated with Various Soil Microenvironments as Determined by Enumeration and DNA Fingerprinting Approach (RISA)

  2000cited by this paper
• Polynucleotide Probes That Target a Hypervariable Region of 16S rRNA Genes To Identify Bacterial Isolates Corresponding to Bands of Community Fingerprints

  1999cited by this paper
• Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population

  1999cited by this paper
• Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov.

  1999influential reference
• Automated Approach for Ribosomal Intergenic Spacer Analysis of Microbial Diversity and Its Application to Freshwater Bacterial Communities

  1999cited by this paper
• PCR fingerprinting of whole genomes: the spacers between the 16S and 23S rRNA genes and of intergenic tRNA gene regions reveal a different intraspecific genomic variability of Bacillus cereus and Bacillus licheniformis [corrected].

  1998cited by this paper
• Utility of 16S–23S rRNA spacer region methodology: how similar are interspace regions within a genome and between strains for closely related organisms?

  1998cited by this paper
• Advances in molecular ecology

  1998cited by this paper
• A single procedure to recover DNA from the surface or inside aggregates and in various size fractions of soil suitable for PCR-based assays of bacterial communities

  1998cited by this paper
• Effects of Bacterial Antibiotic Production on Rhizosphere Microbial Communities from a Culture-Independent Perspective

  1998cited by this paper
• Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation

  1997cited by this paper
• Distribution, diversity and evolution of the bacterial mercury resistance (mer) operon.

  1997cited by this paper
• Response of soil bacteria to Hg(II) in relation to soil characteristics and cell location

  1997cited by this paper
• Molecular differentiation of bacteria by PCR amplification of the 16S–23S rRNA spacer

  1996cited by this paper
• Mercury resistance in aromatic compound degrading Pseudomonas strains

  1996cited by this paper
• New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region.

  1996cited by this paper
• Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences.

  1996cited by this paper
• Phylogenetic relationships ofThiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments

  1995cited by this paper
• Transfer of Two Burkholderia and An Alcaligenes Species to Ralstonia Gen. Nov.

  1995influential reference
• Isolation and characterization of a mercury-resistant broad-host-range plasmid from Pseudomonas cepacia

  1994cited by this paper
• Identification of variability of ribosomal DNA spacer from Pseudomonas soil isolates.

  1994cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• Molecular analysis of mercury-resistant Bacillus isolates from sediment of Minamata Bay, Japan

  1994cited by this paper
• Sequence analysis by electronic mail server.

  1993cited by this paper
• Polymerase chain reaction-restriction fragment length polymorphism analysis shows divergence among mer determinants from gram-negative soil bacteria indistinguishable by DNA-DNA hybridization

  1993cited by this paper
• Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms

  1993cited by this paper
• Distribution of DNA Sequences Encoding Narrow- and Broad-Spectrum Mercury Resistance

  1991cited by this paper
• The relationships of Hg(II) volatilization from a freshwater pond to the abundance ofmer genes in the gene pool of the indigenous microbial community

  1991cited by this paper
• The 16s/23s ribosomal spacer region as a target for DNA probes to identify eubacteria.

  1991cited by this paper
• Cloning, mapping, and molecular characterization of the rRNA operons of Clostridium perfringens

  1991cited by this paper
• DNA Probe-Mediated Detection of Resistant Bacteria from Soils Highly Polluted by Heavy Metals

  1990cited by this paper
• Hybridization of DNA probes with whole-community genome for detection of genes that encode microbial responses to pollutants: mer genes and Hg2+ resistance

  1989cited by this paper
• Plasmid‐encoded mercury resistance in a Pseudomonas stutzeri strain that degrades o‐xylene

  1989cited by this paper
• Distribution of mercury resistance determinants in bacterial communities of river sediments

  1989cited by this paper
• Restriction pattern and polypeptide homology among plasmid-borne mercury resistance determinants.

  1988cited by this paper
• Phenotypic and genotypic adaptation of aerobic heterotrophic sediment bacterial communities to mercury stress

  1986cited by this paper
• [Magnetic resonance imaging of the head compared with the CT scan].

  1985cited by this paper
• Determination of mercury and organomercurial resistance in obligate anaerobic bacteria.

  1985cited by this paper
• Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals

  1985cited by this paper
• Mercury resistance among soil bacteria: Ecology and transferability of genes encoding resistance

  1984cited by this paper
• Role of hydrogen sulfide in mercury resistance determined by plasmid of Clostridium cochlearium T-2

  1981cited by this paper
• A mathematical theory of communication

  1948cited by this paper

• Profiling of rhizobacteria to alleviate drought stress in oil palm using ribosomal intergenic spacer analysis

  2024cites this paper
• Dynamics of fungal and bacterial communities in different types of soil ageing with different dosages of cadmium.

  2022cites this paper
• Micro-fractionation shows microbial community changes in soil particles below 20 μm

  2022cites this paper
• Comparison of bacterial communities and their functional profiling using 16S rRNA gene sequencing between the inherent serpentine-associated sites, hyper-accumulator, downgradient agricultural farmlands, and distal non-serpentine soils.

  2022cites this paper
• The Effect of Biological Control Agents on Paddy Soil Bacterial Community Structure

  2022cites this paper
• Micro-aggregation of a pristine grassland soil selects for bacterial and fungal communities and changes in nitrogen cycling potentials

  2021cites this paper
• Advanced Tools to Assess Microbial Diversity and Their Functions in Restoration of Degraded Ecosystems

  2020cites this paper
• Sub-Lethal Effects of Pesticides on the DNA of Soil Organisms as Early Ecotoxicological Biomarkers

  2020cites this paper
• Characterization of Bacterial and Fungal Assemblages From Historically Contaminated Metalliferous Soils Using Metagenomics Coupled With Diffusion Chambers and Microbial Traps

  2020cites this paper
• Phytostabilization of Pb and Cd polluted soils using Helianthus petiolaris as pioneer aromatic plant species

  2020cites this paper
• Molecular Technologies for Assessment of Bioremediation and Characterization of Microbial Communities at Pollutant-Contaminated Sites

  2019cites this paper
• Bacterial community succession in response to dissolved organic matter released from live jellyfish

  2019cites this paper
• Experimental evidence of a sexually transmitted infection in a wild vertebrate, the black-legged kittiwake (Rissa tridactyla)

  2019cites this paper
• Detection of Effects of a High Trophic Level Predator, Sorex unguiculatus (Soricidae, Mammalia), on a Soil Microbial Community in a Cool Temperate Forest in Hokkaido, Using the ARISA Method

  2019cites this paper
• Analyzing Functional Microbial Diversity

  2019cites this paper
• Detection of Effects of a High Trophic Level Predator, Sorex unguiculatus (Soricidae, Mammalia), on a Soil Microbial Community in a Cool Temperate Forest in Hokkaido, Using the ARISA Method

  2019cites this paper
• The Effects of Heavy Metal Contamination on Bacterial Activities and Species Richness in Soils from Montana ’ s Clark Fork River Valley

  2019cites this paper
• DIVERSITY OF BACTERIA ASSOCIATED WITH THE METAL RESISTANCE FROM THE INDUSTRIAL SOIL SAMPLES OF SALEM DISTRICT, TAMIL NADU, INDIA

  2018cites this paper
• Microbial diversity and community structure in agricultural soils suffering from 4 years of Pb contamination.

  2018cites this paper
• Bacterial communities associated with scyphomedusae at Helgoland Roads

  2018cites this paper
• Draft Microbial Diversity and Community Structure in Agricultural Soils Suffering from 4-year Pb Contamination

  2018cites this paper
• Combined Carbohydrates Support Rich Communities of Particle-Associated Marine Bacterioplankton

  2017cites this paper
• A comprehensive overview on electro-active biofilms, role of exo-electrogens and their microbial niches in microbial fuel cells (MFCs).

  2017influential citation
• ENDOPHYTIC BACTERIA ASSOCIATED TO GENUS Cyperus AND Paspalum IN SOILS WITH MERCURY CONTAMINATION

  2016cites this paper
• Experimental exposure to trace metals affects plumage bacterial community in the feral pigeon

  2016influential citation
• Implication des champignons et des bactéries dans le cycle de l'azote et la production de N2O dans le sol

  2016influential citation
• Linking the Physicochemical Properties with the Abundance and Diversity of Rhizospheric Bacterial Population Inhabiting Paddy Soil Based on a Concerted Multivariate Analysis of PCR-DGGE and RISA

  2016cites this paper
• Spatiotemporal variation of the bacterioplankton community in the German Bight: from estuarine to offshore regions

  2016cites this paper
• Effect of anthropisation and revegetation efforts on soil bacterial community structure in Terga sandpit, Algeria

  2016cites this paper
• The Molecular‐Based Methods Used for Studying Bacterial Diversity in Soils Contaminated with PAHs (The Review)

  2016cites this paper
• PRELIMINARY EVALUATION OF PATHOGENS AFFECTING Eleodes longicollis punctigerus BLAISDELL (COLEOPTERA: TENEBRIONIDAE)

  2016cites this paper
• Evolution conjointe des stratégies d'appariement et de dispersion

  2015cites this paper
• Biodiversity and Microbial Ecosystems Functioning

  2015cites this paper
• Métaux traces : réponses écophysiologiques et rôle dans le maintien du polymorphisme de coloration mélanique du plumage chez le pigeon biset

  2015cites this paper
• Modern molecular approaches for analyzing microbial diversity from mushroom compost ecosystem

  2015cites this paper
• Bacterial communities associated with four ctenophore genera from the German Bight (North Sea).

  2015cites this paper
• Influence of Commonly Used Primer Systems on Automated Ribosomal Intergenic Spacer Analysis of Bacterial Communities in Environmental Samples

  2015cites this paper
• Microbial Diversity: Its Exploration and Need of Conservation

  2015cites this paper
• Microbial arsenic transformation in near subsurface environments

  2015cites this paper
• Benthic bacteria in the German Bight: Characterising community structure and influencing environmental factors

  2015cites this paper
• Bacterial communities in meerkat anal scent secretions vary with host sex, age, and group membership

  2014cites this paper
• Bacterial communities associated with Jellyfish

  2014cites this paper
• Do feather-degrading bacteria actually degrade feather colour? No significant effects of plumage microbiome modifications on feather colouration in wild great tits

  2014cites this paper
• Improving soil bacterial taxa–area relationships assessment using DNA meta-barcoding

  2014cites this paper
• Investigation of bacterial community composition and abundance in a lowland arable catchment

  2014cites this paper
• Uropygial gland size and composition varies according to experimentally modified microbiome in Great tits

  2014influential citation
• Different pioneer plant species select specific rhizosphere bacterial communities in a high mountain environment

  2014cites this paper
• Molecular microbial diversity of deadwood and leaf litter in forests of different forest management intensity

  2014cites this paper
• Bacterial communities associated with jellyfish

  2014influential citation
• Sequential extraction of denitrifying organisms from soils; strongly attached cells produce less N2O than loosely attached cells

  2013cites this paper
• Linking phylogeny to abundant ribotypes of community fingerprints: an exercise on the phylotypic responses to plant species, fertilisation and Lolium perenne ingression

  2013cites this paper
• Microdiversity of Deep-Sea Bacillales Isolated from Tyrrhenian Sea Sediments as Revealed by ARISA, 16S rRNA Gene Sequencing and BOX-PCR Fingerprinting

  2013cites this paper
• Age-related differences in the cloacal microbiota of a wild bird species

  2013cites this paper
• Methods for Analyzing Diversity of Microbial Communities in Natural Environments

  2013cites this paper
• Short-term Dynamics of Dissolved Organic Matter and Bacterial Communities

  2013cites this paper
• An Investigation of Plant-Microbe Interactions Under Cadmium Stress in Agar-Based Medium, Hydroponics, and Soil Studies

  2013cites this paper
• Unraveling the Shed of Unexplored Rhizosphere Microbial Diversity

  2013cites this paper
• Diversity and dynamics in bacterial populations in marine bioaerosols

  2013cites this paper
• of Microbial Diversity Accessing the Soil Metagenome for Studies

  2013cites this paper
• Etude de la diversité bactérienne et génétique dans des cultures dégradant l'ETBE ou le MTBE

  2013cites this paper
• Ocean acidification effects on marine microbial communities

  2013cites this paper
• Short-term dynamics of dissolved organic matter and bacterial communities in the open North Sea off Helgoland Island

  2013cites this paper
• Microdiversity of Deep-Sea Bacillales Isolated from Tyrrhenian Sea Sediments as Revealed by ARISA , 16 S rRNA Gene Sequencing and BOX-PCR Fingerprinting

  2013cites this paper
• APLIKASI POLYMERASE CHAIN REACTION-RIBOSOMAL INTERGENIC SPACER ANALYSIS (PCR-RISA) UNTUK MENENTUKAN KERAGAMAN MIKROBA TANAH PADA HABIT AT TANAMAN PISANG

  2013cites this paper
• Inter-annual and body topographic consistency in the plumage bacterial load of Great tits

  2012cites this paper
• Structure analysis of bacterial community and their heavy-metal resistance determinants in the heavy-metal-contaminated soil sample

  2012cites this paper
• Small Changes in pH Have Direct Effects on Marine Bacterial Community Composition: A Microcosm Approach

  2012cites this paper
• Effect of elevated CO 2 on the dynamics of particle-attached and free-living bacterioplankton communities in an Arctic fjord

  2012cites this paper
• Plumage bacterial load increases during nest-building in a passerine bird

  2012cites this paper
• Variation in Assemblages of Feather Bacteria in Relation to Plumage Color in Female Great Tits

  2012cites this paper
• Characterization of bacterial diversity at different depths in the Moravia Hill landfill site at Medellín, Colombia

  2011influential citation
• A review of molecular methods to study the microbiota of soil and the mycosphere

  2011cites this paper
• Penicilliosis in an African Grey Parrot (Psittacus erithacus)

  2011cites this paper
• Characterisation of the bacterial flora associated with the grey field slug Deroceras reticulatum and assessment of its suitability as a target for biological control.

  2011cites this paper
• Plumage Bacterial Assemblages in a Breeding Wild Passerine: Relationships with Ecological Factors and Body Condition

  2011cites this paper
• Cloacal Bacterial Diversity Increases with Multiple Mates: Evidence of Sexual Transmission in Female Common Lizards

  2011cites this paper
• Plumage Bacterial Load is Related to Species, Sex, Biometrics and Fledging Success in Co-Occurring Cavity-Breeding Passerines

  2011influential citation
• Aktywność dehydrogenaz w glebach zanieczyszczonych cynkiem, miedzią, niklem i kadmem

  2011cites this paper
• Acquisition de tolérance et modification de structure des communautés périphytiques : une réponse précoce à la pression urbaine dans les milieux aquatiques

  2010influential citation
• Accessing the Soil Metagenome for Studies of Microbial Diversity

  2010cites this paper
• F‐RISA fungal clones as potential bioindicators of organic and metal contamination in soil

  2010cites this paper
• Detection of effects of a high trophic level predator, Sorex unguiculatus (Soricidae, Mammalia), on a soil microbial community in a cool temperate forest in Hokkaido, using the ARISA method.

  2010cites this paper
• Sexually transmitted bacteria affect female cloacal assemblages in a wild bird.

  2010cites this paper
• The isolation of heavy-metal resistant culturable bacteria and resistance determinants from a heavy-metal-contaminated site

  2010cites this paper
• Long-term Hg pollution-induced structural shifts of bacterial community in the terrestrial isopod (Porcellio scaber) gut.

  2010cites this paper
• Detection of Effects of a High Trophic Level Predator, Sorex unguiculatus ( Soricidae , Mammalia ), on a Soil Microbial Community in a Cool Temperate Forest in Hokkaido, Using the ARISA Method

  2010cites this paper
• Réponse des communautés microbiennes du sol à l'apport de résidus de culture : influence des pratiques agricoles et lien avec le fonctionnement biologique du sol

  2010influential citation
• Potential for the Use of Rhizobacteria in the Sustainable Management of Contaminated Soils

  2010cites this paper
• Steam treatment of surface soil: how does it affect water-soluble organic matter, C mineralization, and bacterial community composition?

  2010cites this paper
• The Bacterial Diversity in Marine Sediments of the German Bight:relation with carbon and nitrogen content

  2010cites this paper
• Differences in intestinal microbiota between avian brood parasites and their hosts

  2009cites this paper
• Upset Events At Wastewater Treatment Plants: Implications for Mitigative Strategy Development and Bioreactor Microbial Ecology

  2009cites this paper
• Microrganismi probiotici per le piante: una strategia di riduzione degli input nella coltura del pomodoro col metodo biologico

  2009cites this paper
• From the micro-scale to the habitat: Assessment of soil bacterial community structure as shown by soil structure directed sampling

  2009cites this paper
• Molecular characterization of soil microorganisms: effect of industrial pollution on distribution and biodiversity

  2009cites this paper
• Bacterial diversity at the cloaca relates to an immune response in magpie Pica pica and to body condition of great spotted cuckoo Clamator glandarius nestlings

  2009cites this paper
• Populations of heavy fuel oil‐degrading marine microbial community in presence of oil sorbent materials

  2009cites this paper
• Copper dynamics and impact on microbial communities in soils of variable organic status.

  2008cites this paper
• Succession of Actinomycetes During Composting Proccess of Dairy-Farm Waste Investigated by Culture-Dependent and Independent Approaches

  2008cites this paper
• Biodégradation des herbicides en sols tempérés - Contrôle des communautés bactériennes dégradantes par la bioturbation du sol

  2008cites this paper