Appraisal of diversity and functional attributes of thermotolerant wheat associated bacteria from the peninsular zone of India

The biodiversity of wheat associated bacteria was deciphered from the peninsular zone of India. A total of 264 isolated bacteria were analyzed through amplified ribosomal DNA restriction analysis (ARDRA, using three restriction enzymes Alu I, Msp I and Hae III, which led to the clustering of these isolates into 12–16 groups for the different sites at >75% similarity index, adding up to 70 groups). 16S rRNA gene based phylogenetic analysis, revealed that all the bacteria belonged to three phyla Proteobacteria, Firmicutes, and Actinobacteria of 32 distinct species of 15 genera namely: Achromobacter, Alcaligenes, Arthrobacter, Bacillus, Delftia, Enterobacter, Exiguobacterium, Klebsiella, Methylobacterium, Micrococcus, Paenibacillus, Pseudomonas, Rhodobacter, Salmonella and Staphylococcus. Representative strains from each cluster were screened in vitro for plant growth promoting traits. Among plant growth promoting activities, siderophore producers were highest (15%), when compared to indole acetic acid producers (13%), Zn-solubilizers (11%), P-solubilizers (11%), ammonia (10%), hydrogen cyanide producers (9%), biocontrol (8%), N2-fixers (7%), 1-aminocyclopropane-1-carboxylate deaminase (6%), GA producers (6%) and K-solubilizers (5%). Among 32 representative strains, Alcaligenes faecalis, Arthrobacter sp., Bacillus siamensis, Bacillus subtilis, Delftia acidovorans, Methylobacterium mesophilicum, Methylobacterium sp., Pseudomonas poae, Pseudomonas putida, and Pseudomonas stutzeri exhibited more than six different plant growth promoting activities at high temperature. Thermotolerant bacterial isolates may have application as inoculants for plant growth promotion and biocontrol agents for crops growing at high temperature conditions.

• Publication year

  2016

• Venue

  Saudi Journal of Biological Sciences

• Publication date

  2016-02-04

• Fields of study

  Biology, Agricultural and Food Sciences, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.sjbs.2016.01.042PMID 31762671PMCID 6864300
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• Representative strains displayed multiple plant growth promoting traits, with siderophore production the most frequent activity and several isolates showing more than six such activities at high temperature.

  Confidence 0.96

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• 16S rRNA gene phylogenetic analysis placed the isolates in Proteobacteria, Firmicutes, and Actinobacteria and resolved them into 32 species across 15 genera.

  Confidence 0.97

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• 264 bacterial isolates from wheat-associated samples were partitioned by ARDRA with Alu I, Msp I, and Hae III into 12-16 groups per site at >75% similarity, yielding 70 groups overall.

  Confidence 0.98

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review

• 16s rrna gene phylogenetic analysis

  method

  A sequence-based classification approach that uses the bacterial 16S ribosomal RNA gene to infer relatedness and taxonomy.

  Aliases: 16S rRNA analysis, 16S rRNA phylogeny

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• actinobacteria

  taxon, phylum

  One of the bacterial phyla represented among the wheat-associated isolates in the taxonomic analysis.

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• alu i

  enzyme, restriction enzyme

  A restriction enzyme used to digest amplified ribosomal DNA in the clustering workflow.

  Aliases: AluI

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• amplified ribosomal dna restriction analysis

  method

  A fingerprinting method that uses restriction digests of amplified ribosomal DNA to group bacterial isolates.

  Aliases: ARDRA

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• bacterial isolates

  biological sample, organism

  The cultured bacterial strains recovered from wheat-associated samples and subjected to characterization.

  Aliases: isolates

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• firmicutes

  taxon, phylum

  One of the bacterial phyla represented among the wheat-associated isolates in the taxonomic analysis.

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• genera

  taxonomic rank

  The taxonomic rank grouping the identified bacterial species into named genus-level categories.

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• hae iii

  enzyme, restriction enzyme

  A restriction enzyme applied to amplified ribosomal DNA to generate isolate profiles.

  Aliases: HaeIII

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• high temperature

  environmental condition, experimental condition

  The thermal condition under which isolate activities were evaluated for thermotolerance-related function.

  Aliases: elevated temperature

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• msp i

  enzyme, restriction enzyme

  A restriction enzyme used alongside other digests for ARDRA-based grouping of isolates.

  Aliases: MspI

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• plant growth promoting traits

  functional trait, phenotype

  Functional properties of bacteria that can support plant growth or health, such as nutrient mobilization or stress-related activities.

  Aliases: PGP traits, plant growth-promoting traits

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• proteobacteria

  taxon, phylum

  One of the bacterial phyla represented among the wheat-associated isolates in the taxonomic analysis.

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• representative strains

  biological sample, organism

  Selected isolates used as cluster representatives for downstream screening and identification.

  Aliases: representative isolates

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• siderophore production

  functional trait, phenotype

  A bacterial trait involving secretion of iron-chelating compounds.

  Aliases: siderophore producers

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• species

  taxonomic rank

  The taxonomic rank used to count the distinct bacterial species recovered from the isolates.

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review
• thermotolerant bacterial isolates

  organism, biological sample

  Bacterial isolates able to remain functional or grow under elevated temperature conditions.

  Aliases: thermotolerant isolates

  박진우 (dztg5apj7m) extractionB (s683577b42) review--------- ✂ Cut Here ✂ --------- (jqthcshryb) reviewAK (4715169a40) reviewq (76h6bfydm6) reviewmexicorea (qjvnbu8xg3) review

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