Phylogenetic beta diversity, similarity, and differentiation measures based on Hill numbers

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Ecological Monographs

• Publication date

  2014-02-01

• Fields of study

  Biology

• Identifiers
  DOI 10.1890/12-0960.1
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Proposing a resolution to debates on diversity partitioning.

  2012influential reference
• Integrating ecology and phylogenetics: the footprint of history in modern‐day communities1

  2012cited by this paper
• A metric of biodiversity that integrates abundance, phylogeny, and function

  2012cited by this paper
• Measuring diversity: the importance of species similarity.

  2012cited by this paper
• Decomposing phylogenetic entropy into α, β and γ components

  2011cited by this paper
• Partitioning diversity for conservation analyses

  2010influential reference
• On beta diversity decomposition: trouble shared is not trouble halved.

  2010cited by this paper
• Compositional similarity and β ( beta ) diversity

  2010influential reference
• Phylogenetic diversity measures based on Hill numbers

  2010cited by this paper
• Partitioning diversity.

  2010cited by this paper
• Diversity partitioning without statistical independence of alpha and beta.

  2010cited by this paper
• Decomposition of trait diversity among the nodes of a phylogenetic tree

  2010cited by this paper
• Independence of alpha and beta diversities.

  2010cited by this paper
• The partitioning of diversity: showing Theseus a way out of the labyrinth

  2010influential reference
• Multiplicative partition of true diversity yields independent alpha and beta components; additive partition does not.

  2010cited by this paper
• Phylogenetic Metrics of Community Similarity

  2010cited by this paper
• Rockfish (Sebastes) that are evolutionarily isolated are also large, morphologically distinctive and vulnerable to overfishing

  2009cited by this paper
• The Cladistic Basis for the Phylogenetic Diversity (PD) Measure Links Evolutionary Features to Environmental Gradients and Supports Broad Applications of Microbial Ecology’s “Phylogenetic Beta Diversity” Framework

  2009cited by this paper
• Diversity partitioning of Rao's quadratic entropy.

  2009cited by this paper
• Hierarchical partitioning of evolutionary and ecological patterns in the organization of phylogenetically-structured species assemblages: application to rockfish (genus: Sebastes) in the Southern California Bight.

  2009influential reference
• A New Phylogenetic Diversity Measure Generalizing the Shannon Index and Its Application to Phyllostomid Bats

  2009cited by this paper
• GST and its relatives do not measure differentiation

  2008influential reference
• Phylogenetic beta diversity: linking ecological and evolutionary processes across space in time.

  2008cited by this paper
• A Two‐Stage Probabilistic Approach to Multiple‐Community Similarity Indices

  2008cited by this paper
• Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

  2008cited by this paper
• Interpreting and estimating measures of community phylogenetic structuring

  2008cited by this paper
• Partitioning diversity into independent alpha and beta components.

  2007influential reference
• The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier).

  2007cited by this paper
• Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities

  2007cited by this paper
• Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment

  2007cited by this paper
• Characterizing the phylogenetic structure of communities by an additive partitioning of phylogenetic diversity

  2007influential reference
• Entropy and diversity

  2006influential reference
• Integrating Phylogenies into Community Ecology

  2006cited by this paper
• Multivariate dispersion as a measure of beta diversity.

  2006cited by this paper
• INTEGRATING PHYLOGENIES INTO COMMUNITY ECOLOGY1

  2006cited by this paper
• UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

  2005influential reference
• Additive partitioning of Rao's quadratic diversity: a hierarchical approach

  2005cited by this paper
• Simpson diversity and the Shannon–Wiener index as special cases of a generalized entropy

  2005cited by this paper
• Functional diversity (FD), species richness and community composition

  2002cited by this paper
• The additive partitioning of species diversity: recent revival of an old idea

  2002cited by this paper
• Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees

  2000cited by this paper
• Preserving the Information Content of Species: Genetic Diversity, Phylogeny, and Conservation Worth

  1997cited by this paper
• Evolutionary Biology and Community Ecology

  1996cited by this paper
• Statistics and partitioning of species diversity, and similarity among multiple communities

  1996cited by this paper
• Comparison of different methods for diversity ordering

  1995cited by this paper
• New \'biodiversity\' measures reveal a decrease in taxonomic distinctness with increasing stress

  1995cited by this paper
• Conservation evaluation and phylogenetic diversity

  1992influential reference
• What to protect?—Systematics and the agony of choice

  1991cited by this paper
• Possible generalization of Boltzmann-Gibbs statistics

  1988cited by this paper
• Diversity, diversity indices and tropical cockroaches

  1983cited by this paper
• Diversity and dissimilarity coefficients: A unified approach☆

  1982cited by this paper
• Similarity indices, sample size and diversity

  1981cited by this paper
• Diversity indices: which ones are admissible?

  1979cited by this paper
• Mathematical model for studying genetic variation in terms of restriction endonucleases.

  1979cited by this paper
• Diversity and Evenness: A Unifying Notation and Its Consequences

  1973influential reference
• Analysis of gene diversity in subdivided populations.

  1973cited by this paper
• Generalized Information Functions

  1970cited by this paper
• Quantification method of classification processes. Concept of structural a-entropy

  1967cited by this paper
• Measurement of "Overlap" in Comparative Ecological Studies

  1966influential reference
• Measuring of interspecific association and similarity between communities.

  1961cited by this paper

• A Diversity Diet for a Healthier Model: A Case Study of French ModernBERT

  2026cites this paper
• Mathematically and biologically consistent framework for presence–absence pairwise indices

  2025cites this paper
• Climate change will greatly alter multifaceted biodiversity patterns in goatfish species

  2025cites this paper
• How Do the Functional Resemblance Structure and Its Component‐Dependence Change Among the Successional Stages in Degraded Karst Forests?

  2025cites this paper
• Shaping beta diversity in arid landscape through native plant species contributions: synergy of climate, soil, and species traits

  2025cites this paper
• Biogeographic Patterns of Estimation Bias of Biodiversity Indices

  2025cites this paper
• Patterns and Drivers of Phylogenetic Beta Diversity in the Forests and Savannas of Africa

  2025cites this paper
• Cross‐scale effects of multi‐strata plant diversity on ecosystem multifunctionality in temperate forests

  2025cites this paper
• Enhancing structural heterogeneity in managed forest landscapes promotes gamma but not beta diversity in understorey plant communities

  2025cites this paper
• The units of biodiversity

  2025cites this paper
• Decomposing diversity into measures of evenness, similarity, and richness

  2024cites this paper
• Beta‐diversity buffers fragmented landscapes against local species losses

  2024cites this paper
• Change in saproxylic beetle, fungi and bacteria assemblages along horizontal and vertical gradients of sun-exposure in forest

  2024cites this paper
• Small sharks, big problems: DNA analysis of small fins reveals trade regulation gaps and burgeoning trade in juvenile sharks

  2024cites this paper
• "Metagenomics reveal the potential for geosmin and 2-methylisoborneol production across multiple bacterial phyla in recirculating aquaculture systems".

  2024cites this paper
• Vegetation structure and bird diversity in silvopastoral systems of the Amazonian piedmont of Colombia

  2024cites this paper
• Discriminating woody species assemblages from National Forest Inventory data based on phylogeny in Georgia

  2024cites this paper
• Tree diversity across multiple scales and environmental heterogeneity promote ecosystem multifunctionality in a large temperate forest region

  2024cites this paper
• Future Aware Safe Active Learning of Time Varying Systems using Gaussian Processes

  2024cites this paper
• How deforestation and forest use affect tree diversity in a conifer forest from central Mexico

  2024cites this paper
• Distributional ecology: Opening new research windows by addressing aggregation‐related puzzles

  2024cites this paper
• Mathematical constraints on a family of biodiversity measures via connections with Rényi entropy

  2024cites this paper
• Revisiting Alwyn H. Gentry’s forest transect data: latitudinal beta diversity patterns are revealed using a statistical sampling-model-based approach

  2023cites this paper
• Spatiotemporal metacommunity structures and beta diversity of macroinvertebrates in stream and lake systems

  2023cites this paper
• Quantifying mitochondrial heteroplasmy diversity: A computational approach

  2023influential citation
• Diversidad, composición y estructura de la vegetación en fincas ganaderas del valle del río Cesar, Colombia: bosques, sistemas silvopastoriles y potreros convencionales

  2023cites this paper
• Functional and phylogenetic β diversities and their link with clustering/overdispersion and uniqueness/redundancy

  2023cites this paper
• Analysis of the Correlation between Genetic and Species Diversity in a Temperate Forest: Variation in Cohorts and Effect of Disturbance

  2023cites this paper
• Hummingbird diversity in a fragmented tropical landscape in the Chocó biogeographic zone

  2023cites this paper
• Factors influencing carrion communities are only partially consistent with those of deadwood necromass

  2023cites this paper
• Effects of Inbreeding on Microbial Community Diversity of Zea mays

  2023cites this paper
• Bacterial Communities in the Rhizosphere at Different Growth Stages of Maize Cultivated in Soil Under Conventional and Conservation Agricultural Practices

  2022cites this paper
• Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish

  2022cites this paper
• Decomposition of the Leinster-Cobbold Diversity Index

  2022cites this paper
• Dung‐visiting beetle diversity is mainly affected by land use, while community specialization is driven by climate

  2022cites this paper
• Assessing the effect of roads on mountain plant diversity beyond species richness

  2022cites this paper
• The community ecology perspective of omics data

  2022cites this paper
• Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis

  2021cites this paper
• Diversity and Species Turnover of Insects in a Jatropha curcas Agroecosystem

  2021cites this paper
• Unraveling the drivers of plant taxonomic and phylogenetic β-diversity in a human-modified tropical dry forest

  2021cites this paper
• Captivity systematically alters the composition yet not the diversity of vertebrate gut microbiomes

  2021cites this paper
• Mathematically and biologically consistent framework for presence-absence pairwise indices

  2021cites this paper
• Urbanization is associated to a loss of phylogenetic diversity of birds in a medium size city on the Andes of Colombia, South America

  2021cites this paper
• Similarity-Reduced Diversities: the Effective Entropy and the Reduced Entropy

  2021cites this paper
• Climate Sentinels Program: Meeting the Challenge of Regional Biodiversity Conservation Adaptation to Climate Change

  2021cites this paper
• Multiple dimensions of bird beta diversity support that mountains are higher in the tropics

  2021cites this paper
• DNA metabarcoding suggests adaptive seasonal variation of individual trophic traits in a critically endangered fish

  2021cites this paper
• Climate as a major driver of avian diversity in riparian Amazonian habitats along an environmental gradient

  2020cites this paper
• The definition and measurement of heterogeneity

  2020cites this paper
• Factorization of joint metacommunity diversity into its marginal components: an alternative to the partitioning of trait diversity

  2020cites this paper
• Defining Individual-Level Genetic Diversity and Similarity Profiles

  2020influential citation
• Development of biological soil crust prompts convergent succession of prokaryotic communities

  2020cites this paper
• From alpha to beta functional and phylogenetic redundancy

  2020cites this paper
• Salvage logging changes the taxonomic, phylogenetic and functional successional trajectories of forest bird communities

  2020cites this paper
• Soil microbial diversity drops with land use change in a high mountain temperate forest: a metagenomics survey.

  2020cites this paper
• DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

  2020cites this paper
• Hill-based dissimilarity indices and null models for analysis of microbial 1 community assembly

  2020cites this paper
• Decoupled responses of native and exotic tree diversities to distance from old‐growth forest and soil phosphorus in novel secondary forests

  2020cites this paper
• Primary determinants of communities in deadwood vary among taxa but are regionally consistent

  2020cites this paper
• Floristics of forests across low nutrient soils in Sulawesi, Indonesia

  2020cites this paper
• Hill-based dissimilarity indices and null models for analysis of microbial community assembly

  2020cites this paper
• Weighting effective number of species measures by abundance weakens detection of diversity responses

  2019cites this paper
• Diversity and its decomposition into variety, balance and disparity

  2019cites this paper
• Individual-Level SNP Diversity and Similarity Profiles

  2019influential citation
• Reconciling the concepts and measures of diversity, rarity and originality in ecology and evolution

  2019cites this paper
• An attribute‐diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures

  2019cites this paper
• hilldiv: an R package for the integral analysis of diversity based on Hill numbers

  2019cites this paper
• Measuring functional dissimilarity among plots: Adapting old methods to new questions

  2019cites this paper
• A compilation of and typology for abundance-, phylogenetic- and functional-based diversity metrics

  2019cites this paper
• A guide to the application of Hill numbers to DNA‐based diversity analyses

  2019influential citation
• Comparing two classes of alpha diversities and their corresponding beta and (dis)similarity measures, with an application to the Formosan sika deer Cervus nippon taiouanus reintroduction programme

  2019cites this paper
• Quantifying evenness and linking it to diversity, beta diversity, and similarity.

  2019influential citation
• Rare species, functional groups, and evolutionary lineages drive successional trajectories in disturbed forests.

  2019cites this paper
• Measuring inter-specific diversity. Benefits of species originality indices in community ecology and conservation biology

  2019cites this paper
• A geometric approach to scaling individual distributions to macroecological patterns

  2018cites this paper
• Promises and pitfalls of using high‐throughput sequencing for diet analysis

  2018cites this paper
• Scaling the chord and Hellinger distances in the range [0,1]: An option to consider

  2018cites this paper
• A family of (dis)similarity measures based on evenness and its relationship with beta diversity

  2018cites this paper
• The use of rarefaction and extrapolation as methods of estimating the effects of river eutrophication on macrophyte diversity

  2018cites this paper
• Diversity time-period and diversity-time-area relationships exemplified by the human microbiome

  2018cites this paper
• Facilitation beyond species richness

  2018cites this paper
• Measuring species diversity in the tropics: a review of methodological approaches and framework for future studies

  2018cites this paper
• Measuring metagenome diversity and similarity with Hill numbers

  2018cites this paper
• Measuring Microbiome Diversity and Similarity with Hill Numbers

  2018cites this paper
• Diversity of insects in conventional and organic tomato crops (Solanum lycopersicum L., solanaceae)

  2018cites this paper
• DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses

  2018cites this paper
• The generalized replication principle and the partitioning of functional diversity into independent alpha and beta components

  2018cites this paper
• DNA metabarcoding reveals changes in the contents of carnivorous plants along an elevation gradient

  2018cites this paper
• Embracing scale-dependence to achieve a deeper understanding of biodiversity and its change across communities

  2018cites this paper
• Decomposing functional diversity

  2017cites this paper
• From phylogenetic to functional originality: Guide through indices and new developments

  2017cites this paper
• Biodiversity and Ecosystem Functioning - What Diversity? Which Functioning?

  2017cites this paper
• Deciphering the enigma of undetected species, phylogenetic, and functional diversity based on Good-Turing theory.

  2017cites this paper
• The components of biodiversity, with a particular focus on phylogenetic information

  2017cites this paper
• Information Theory Broadens the Spectrum of Molecular Ecology and Evolution.

  2017cites this paper
• Phylogenetic diversity and its application in floristics and biodiversity conservation

  2017cites this paper
• Partitioning abundance‐based multiple‐site dissimilarity into components: balanced variation in abundance and abundance gradients

  2017cites this paper
• Nestedness and species replacement along bathymetric gradients in the deep sea reflect productivity: a test with polychaete assemblages in the oligotrophic north‐west Gulf of Mexico

  2017cites this paper
• The generalized replication principle and the partitioning of functional diversity into independent alpha and beta components

  2017cites this paper
• Behavior, brain, and morphology in a complex insect society: trait integration and social evolution in the exceptionally polymorphic ant Pheidole rhea

  2017cites this paper