Brain extraction in pediatric ADC maps, toward characterizing neuro-development in multi-platform and multi-institution clinical images

No abstract is available for this paper.

• Publication year

  2015

• Venue

  NeuroImage

• Publication date

  2015-11-15

• Fields of study

  Medicine, Computer Science, Engineering

• Identifiers
  DOI 10.1016/j.neuroimage.2015.08.002PMID 26260429PMCID PMC4966541
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Deformable registration for quantifying longitudinal tumor changes during neoadjuvant chemotherapy

  2015influential reference
• Imaging patterns of brain development and their relationship to cognition.

  2015cited by this paper
• Graph-based deformable image registration

  2015cited by this paper
• The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

  2015cited by this paper
• A generative probability model of joint label fusion for multi-atlas based brain segmentation

  2014cited by this paper
• The early development of brain white matter: a review of imaging studies in fetuses, newborns and infants.

  2014cited by this paper
• Correction strategy for diffusion-weighted images corrupted with motion: application to the DTI evaluation of infants' white matter.

  2014cited by this paper
• High Throughput Tools to Access Images from Clinical Archives for Research

  2014influential reference
• Multi-parametric evaluation of the white matter maturation

  2014cited by this paper
• Learning to Rank Atlases for Multiple-Atlas Segmentation

  2014cited by this paper
• Developmental brain ADC atlas creation from clinical images

  2014influential reference
• Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline

  2014cited by this paper
• Brain volume estimation from post-mortem newborn and fetal MRI

  2014cited by this paper
• Comparative Evaluation of Registration Algorithms in Different Brain Databases With Varying Difficulty: Results and Insights

  2014influential reference
• Myelin, myelination, and corresponding magnetic resonance imaging changes.

  2014cited by this paper
• Fast-brain MRI in children is quick, without sedation, and radiation-free, but beware of limitations.

  2013cited by this paper
• Diffusion tensor imaging of normal brain development

  2013cited by this paper
• STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation

  2013cited by this paper
• A Probabilistic Patch-Based Label Fusion Model for Multi-Atlas Segmentation With Registration Refinement: Application to Cardiac MR Images

  2013cited by this paper
• Deformable Medical Image Registration: A Survey

  2013cited by this paper
• Multi-atlas skull-stripping.

  2013influential reference
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  2013influential reference
• A unified framework for cross-modality multi-atlas segmentation of brain MRI

  2013cited by this paper
• Measurement of Myelin in the Preterm Brain: Multi-compartment Diffusion Imaging and Multi-component T2 Relaxometry

  2013cited by this paper
• Registration of FA and T1-Weighted MRI Data of Healthy Human Brain Based on Template Matching and Normalized Cross-Correlation

  2013cited by this paper
• Multiatlas-based segmentation with preregistration atlas selection.

  2013cited by this paper
• Ensemble-based medical image labelling via sampling morphological appearance manifolds

  2013influential reference
• Using Manifold Learning for Atlas Selection in Multi-Atlas Segmentation

  2013cited by this paper
• Multi‐system repeatability and reproducibility of apparent diffusion coefficient measurement using an ice‐water phantom

  2013cited by this paper
• Comparison of apparent diffusion coefficient values among different MRI platforms: a multicenter phantom study.

  2013cited by this paper
• Diffusion tensor imaging of the median nerve at 3.0 T using different MR scanners: agreement of FA and ADC measurements.

  2013cited by this paper
• Atlas-based neuroinformatics via MRI: harnessing information from past clinical cases and quantitative image analysis for patient care.

  2013cited by this paper
• Anaesthesia or sedation for paediatric MRI: advantages and disadvantages

  2013cited by this paper
• TH-C-WAB-04: Atlas Ranking and Selection for Multi-Atlas Segmentation.

  2013cited by this paper
• A unified framework for cross-modality multi-atlas segmentation of brain MRI.

  2013cited by this paper
• Attribute Similarity and Mutual-Saliency Weighting for Registration and Label Fusion

  2012influential reference
• Multi-contrast diffusion tensor image registration with structural MRI

  2012influential reference
• accurate skull stripping method based on simplex meshes and histogram nalysis for magnetic resonance images

  2012cited by this paper
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  2012cited by this paper
• Prognostic Value of Diffusion Tensor Imaging Parameters in Severe Traumatic Brain Injury

  2012cited by this paper
• FreeSurfer

  2012cited by this paper
• Atlas-based automatic mouse brain image segmentation revisited: model complexity vs. image registration.

  2012cited by this paper
• Skull Stripping of Neonatal Brain MRI: Using Prior Shape Information with Graph Cuts

  2012cited by this paper
• Nonsupervised Ranking of Different Segmentation Approaches: Application to the Estimation of the Left Ventricular Ejection Fraction From Cardiac Cine MRI Sequences

  2012cited by this paper
• Reconstruction of fetal brain MRI with intensity matching and complete outlier removal

  2012influential reference
• Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE

  2012influential reference
• Quantitative tract-based white matter development from birth to age 2 years

  2012influential reference
• BEaST: Brain extraction based on nonlocal segmentation technique

  2012cited by this paper
• Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration

  2012influential reference
• 4D Multi-Modality Tissue Segmentation of Serial Infant Images

  2012cited by this paper
• Image Similarity and Tissue Overlaps as Surrogates for Image Registration Accuracy: Widely Used but Unreliable

  2012cited by this paper
• Infant Brain Atlases from Neonates to 1- and 2-Year-Olds

  2011cited by this paper
• Paediatric MRI under sedation: is it necessary? What is the evidence for the alternatives?

  2011cited by this paper
• Evaluation framework for carotid bifurcation lumen segmentation and stenosis grading

  2011cited by this paper
• Advances in pediatric diffusion tensor imaging

  2011cited by this paper
• Comparison of Acute and Chronic Traumatic Brain Injury Using Semi-Automatic Multimodal Segmentation of MR Volumes

  2011cited by this paper
• A review of atlas-based segmentation for magnetic resonance brain images

  2011cited by this paper
• LoAd: A locally adaptive cortical segmentation algorithm

  2011cited by this paper
• Atlas-Free Surface Reconstruction of the Cortical Grey-White Interface in Infants

  2011cited by this paper
• A reproducible evaluation of ANTs similarity metric performance in brain image registration

  2011influential reference
• Unbiased average age-appropriate atlases for pediatric studies

  2011cited by this paper
• Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation

  2011cited by this paper
• Robust Statistical Label Fusion Through Consensus Level, Labeler Accuracy, and Truth Estimation (COLLATE)

  2011cited by this paper
• Alzheimer's disease.

  2011cited by this paper
• A learning-based wrapper method to correct systematic errors in automatic image segmentation: Consistently improved performance in hippocampus, cortex and brain segmentation

  2011cited by this paper
• DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting

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• Robust Brain Extraction Across Datasets and Comparison With Publicly Available Methods

  2011cited by this paper
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  2010cited by this paper
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  2010cited by this paper
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  2010cited by this paper
• Diffusion Tensor Imaging in Brain Development

  2010cited by this paper
• Biomedical Image Registration, 4th International Workshop, WBIR 2010, Lübeck, Germany, July 11-13, 2010. Proceedings

  2010cited by this paper
• Absolute diffusivities define the landscape of white matter degeneration in Alzheimer's disease.

  2010cited by this paper
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  2010cited by this paper
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• MR imaging of term infants with hypoxic-ischaemic encephalopathy as a predictor of neurodevelopmental outcome and late MRI appearances

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  2010cited by this paper
• A quantitative evaluation of cross-participant registration techniques for MRI studies of the medial temporal lobe

  2009cited by this paper
• Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

  2009influential reference
• Pediatric neuroimaging.

  2009cited by this paper
• Multi-atlas based segmentation of brain images: Atlas selection and its effect on accuracy

  2009cited by this paper
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  2009cited by this paper
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• DRAMMS: Deformable Registration via Attribute Matching and Mutual-Saliency Weighting

  2009cited by this paper
• Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information.

  2008influential reference
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  2008cited by this paper
• Do Apparent Diffusion Coefficient Measurements Predict Outcome in Children with Neonatal Hypoxic-Ischemic Encephalopathy?

  2008cited by this paper
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  2008cited by this paper
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  2021cites this paper
• Voxelwise and Regional Brain Apparent Diffusion Coefficient Changes on MRI from Birth to 6 Years of Age.

  2020cites this paper
• Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0–2 years

  2020cites this paper
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