Increasing phylogenetic support for explosively radiating taxa: The promise of high‐throughput sequencing for Oxytropis (Fabaceae)

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Journal of Systematics and Evolution

• Publication date

  2017-07-01

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1111/jse.12269
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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  2017influential reference
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• MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

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  2013influential reference
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  2022influential citation
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  2022cites this paper
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  2022cites this paper
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  2022cites this paper
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  2021cites this paper
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  2019cites this paper
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