The microbial habitat in soil: scale, heterogeneity and functional consequences†

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Journal of Plant Nutrition and Soil Science

• Publication date

  2017-05-30

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1002/JPLN.201700184
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Effects of habitat constraints on soil microbial community function

  2017cited by this paper
• Three-dimensional soil organic matter distribution, accessibility and microbial respiration in macroaggregates using osmium staining and synchrotron X-ray computed tomography

  2016cited by this paper
• Mineral protection of soil carbon counteracted by root exudates

  2015cited by this paper
• Community assembly effects shape the biodiversity-ecosystem functioning relationships

  2014cited by this paper
• Spatial scales of interactions among bacteria and between bacteria and the leaf surface

  2014cited by this paper
• Spatial Ecology of Bacteria at the Microscale in Soil

  2014cited by this paper
• Intra-aggregate pore structure influences phylogenetic composition of bacterial community in macroaggregates

  2014influential reference
• Diversity and heritability of the maize rhizosphere microbiome under field conditions

  2013cited by this paper
• Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

  2013cited by this paper
• Effects of different soil structures on the decomposition of native and added organic carbon

  2013cited by this paper
• Submicron scale imaging of soil organic matter dynamics using NanoSIMS – From single particles to intact aggregates

  2012cited by this paper
• Microscale distribution and function of soil microorganisms in the interface between rhizosphere and detritusphere

  2012cited by this paper
• Dynamics of bacterial communities in relation to soil aggregate formation during the decomposition of 13C-labelled rice straw

  2012cited by this paper
• What If Ecological Communities Are Not Wholes

  2012cited by this paper
• Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups

  2012cited by this paper
• Microbial biogeography at the soil pore scale

  2011cited by this paper
• The moisture response of soil heterotrophic respiration: interaction with soil properties

  2011cited by this paper
• Soil biodiversity and carbon cycling: a review and synthesis of studies examining diversity–function relationships

  2011cited by this paper
• Carbon dynamics in topsoil and in subsoil may be controlled by different regulatory mechanisms

  2010cited by this paper
• Biogeography and habitat modelling of high-alpine bacteria.

  2010cited by this paper
• Small-scale Diversity and Succession of Fungi in the Detritusphere of Rye Residues

  2009cited by this paper
• What is microbial community ecology?

  2009cited by this paper
• Limited diffusive fluxes of substrate facilitate coexistence of two competing bacterial strains.

  2008cited by this paper
• Spatial complexity of soil organic matter forms at nanometre scales

  2008cited by this paper
• Microbial stress-response physiology and its implications for ecosystem function.

  2007cited by this paper
• Pyrosequencing enumerates and contrasts soil microbial diversity

  2007cited by this paper
• Investigating microbial micro-habitat structure using X-ray computed tomography

  2006cited by this paper
• Three-dimensional Microorganization of the Soil–Root–Microbe System

  2006cited by this paper
• Maintenance of soil functioning following erosion of microbial diversity.

  2006cited by this paper
• In situ quantitation of the spatial scale of calling distances and population density-independent N-acylhomoserine lactone-mediated communication by rhizobacteria colonized on plant roots.

  2006cited by this paper
• Local Ecological Communities*

  2006cited by this paper
• Microbial biogeography: putting microorganisms on the map

  2006cited by this paper
• Heterogeneity of Physico-Chemical Properties in Structured Soils and Its Consequences

  2006influential reference
• Towards an evolutionary ecology of life in soil.

  2005cited by this paper
• Structure formation and its consequences for gas and water transport in unsaturated arable and forest soils

  2005cited by this paper
• Aquatic habitats and diffusion constraints affecting microbial coexistence in unsaturated porous media

  2005cited by this paper
• Analysis of Soil Whole- and Inner-Microaggregate Bacterial Communities

  2004cited by this paper
• Spatial location of carbon decomposition in the soil pore system

  2004cited by this paper
• Interactions and Self-Organization in the Soil-Microbe Complex

  2004cited by this paper
• A Two-Species Test of the Hypothesis That Spatial Isolation Influences Microbial Diversity in Soil

  2002cited by this paper
• Review: Factors affecting rhizosphere priming effects

  2002cited by this paper
• Conservation implications of the link between biodiversity and ecosystem functioning

  2001cited by this paper
• Can there be a contemporary ecological dimension to soil biology without a habitat

  1998cited by this paper
• Respiratory Activity and Oxygen Distribution in Natural Aggregates in Relation to Anaerobiosis

  1996cited by this paper
• The Ecological and Physiological Significance of the Growth of Heterotrophic Microorganisms with Mixtures of Substrates

  1995cited by this paper
• Microenvironments of soil microorganisms

  1988influential reference
• Nitrogen Mineralization Potentials of Soils

  1972cited by this paper

• Unearthing and Harnessing the Role of Microbial Biofilms in Soil Ecosystems: Structure, Function and Potential for Enhancing Soil Integrity and Climate Mitigation

  2026cites this paper
• Autotrophic and Mixotrophic Microbial Carbon Assimilation During Organic Residue Decomposition in Mollisols: Mechanisms and Controls

  2026cites this paper
• Diversifying Grapevines With Aromatic Plants Changes the Soil Habitat, Microbial Community Composition and Functions Toward More Efficient Substrate Use and Nutrient Allocation

  2025cites this paper
• Some new grand questions in soil biology and biochemistry

  2025cites this paper
• Climate Change Accelerates Microbial Biomass Accumulation in Soils

  2025cites this paper
• Characterization and environmental applications of soil biofilms: a review

  2024cites this paper
• Monitoring the impact of confinement on hyphal penetration and fungal behavior

  2024cites this paper
• Environment and microbiome drive different microbial traits and functions in the macroscale soil organic carbon cycle

  2024cites this paper
• Spatial substrate heterogeneity limits microbial growth as revealed by the joint experimental quantification and modeling of carbon and heat fluxes

  2024cites this paper
• Conversion of SIC to SOC enhances soil carbon sequestration and soil structural stability in alpine ecosystems of the Qinghai-Tibet Plateau

  2024cites this paper
• Response of the Soil Bacterial Community to Soil Fertility During Vegetation Restoration in Soil and Water Loss Areas in South China

  2024cites this paper
• How to adequately represent biological processes in modeling multifunctionality of arable soils

  2024cites this paper
• Coupling scales in process‐based soil organic carbon modeling including dynamic aggregation

  2024cites this paper
• Depth‐dependent responses of the soil bacterial community under vegetation restoration in soil erosion areas of southern China

  2024cites this paper
• The stonesphere in agricultural soils: A microhabitat associated with rock fragments bridging rock and soil

  2024cites this paper
• Comparison of Bacterial Diversity in the Rhizosphere of Chromolaena odorata (L.) R.M. King and H.Rob. in Different Habitats

  2023cites this paper
• Biofilms Communities In The Soil: Characteristic And Interactions Using Mathematical Model.

  2023cites this paper
• Biogeographical patterns of the soil fungal:bacterial ratio across France

  2023cites this paper
• Do temperature and moisture conditions impact soil microbiology and aggregate stability?

  2023cites this paper
• Multi-omics analyses from a single sample: Prior metabolite extraction does not alter the 16S rRNA-based characterization of prokaryotic community in a diversity of sample types

  2023cites this paper
• Soil Microbial Communities Involved in Proteolysis and Sulfate-Ester Hydrolysis Are More Influenced by Interannual Variability than by Crop Sequence

  2023cites this paper
• The contribution of microbial activity to soil–water interactions and soil microstructural stability of a silty loam soil under moisture dynamics

  2022cites this paper
• Microbial communities associated with mounds of the Orange-footed scrubfowl Megapodius reinwardt

  2022cites this paper
• Intracellular carbon storage by microorganisms is an overlooked pathway of biomass growth

  2022cites this paper
• Spatial Distribution of the Pepper Blight (Phytophthora capsici) Suppressive Microbiome in the Rhizosphere

  2022cites this paper
• Ecological insights into soil health according to the life-history traits and environment-wide associations of bacteria in agricultural soils

  2022cites this paper
• Application of microfluidic systems in modelling impacts of environmental structure on stress-sensing by individual microbial cells

  2021cites this paper
• Substrate spatial heterogeneity reduces soil microbial activity

  2021influential citation
• Soil organic carbon under lockdown: Fresh plant litter as the nucleus for persistent carbon

  2021cites this paper
• Dynamic interactions at the mineral–organic matter interface

  2021cites this paper
• A small-scale test for rapid assessment of the soil development potential in post-mining soils

  2021cites this paper
• Micro on a macroscale: relating microbial-scale soil processes to global ecosystem function.

  2021cites this paper
• Particulate organic matter as a functional soil component for persistent soil organic carbon

  2021cites this paper
• Microfluidic chips provide visual access to in situ soil ecology

  2021cites this paper
• Transferring concepts from plant to microbial ecology: A framework proposal to identify relevant bacterial functional traits

  2021cites this paper
• Effect of soil biofilms on ecological function and impact on soil properties

  2021cites this paper
• Methods for Studying Bacterial–Fungal Interactions in the Microenvironments of Soil

  2021cites this paper
• Soil Bacterial Biogeography at the Scale of France

  2021cites this paper
• Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils.

  2021cites this paper
• “Soil biofilms”: Misleading description of the spatial distribution of microbial biomass in soils

  2020cites this paper
• Hidden heterogeneity and co-occurrence networks of soil prokaryotic communities revealed at the scale of individual soil aggregates

  2020cites this paper
• Correlations of Soil Fungi, Soil Structure and Tree Vigour on an Apple Orchard with Replant Soil

  2020cites this paper
• Dynamic Stability of Soil Carbon: Reassessing the “Permanence” of Soil Carbon Sequestration

  2020cites this paper
• Computation Of Microbial Ecosystems in Time and Space (COMETS): An open source collaborative platform for modeling ecosystems metabolism

  2020cites this paper
• A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)

  2020cites this paper
• Inhibitions Dominate but Stimulations and Growth Rescues Are Not Rare Among Bacterial Isolates from Grains of Forest Soil

  2020cites this paper
• How Microbial Biofilms Control the Environmental Fate of Engineered Nanoparticles?

  2020cites this paper
• Biogeography of soil microbial habitats across France

  2020cites this paper
• Pore‐scale view of microbial turnover: Combining 14C imaging, μCT and zymography after adding soluble carbon to soil pores of specific sizes

  2020cites this paper
• Trade-off between potential phytopathogenic and non-phytopathogenic fungi in the peanut monoculture cultivation system

  2020cites this paper
• The ecology of heterogeneity: soil bacterial communities and C dynamics

  2020cites this paper
• Contrasted Micro-Eukaryotic Diversity Associated with Sphagnum Mosses in Tropical, Subtropical and Temperate Climatic Zones

  2019cites this paper
• Soil biofilms: microbial interactions, challenges, and advanced techniques for ex-situ characterization

  2019cites this paper
• Role of Microorganisms in Soil Genesis and Functions

  2019cites this paper
• Managing Agroecosystems for Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Forward

  2019cites this paper
• Pore morphology reveals interaction of biological and physical processes for structure formation in soils of the semiarid Argentinean Pampa

  2019cites this paper
• Physical constraints for respiration in microbial hotspots in soil and their importance for denitrification

  2019cites this paper
• Co-culture of soil biofilm isolates enables the discovery of novel antibiotics

  2018cites this paper
• Factors controlling the variability of organic matter in the top- and subsoil of a sandy Dystric Cambisol under beech forest

  2018cites this paper
• Edaphic correlates of feedstock‐associated diazotroph communities

  2018cites this paper
• Managing Agroecosystems for Soil Microbial Carbon Use Managing Agroecosystems for Soil Microbial Carbon Use Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Efficiency: Ecological Unknowns, Potential Outcomes, and a Path Forward Forward

  year unknowncites this paper
• Dynamic interactions at the mineral–organic matter interface

  year unknowncites this paper