Analysis of Soil Whole- and Inner-Microaggregate Bacterial Communities

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Microbial Ecology

• Publication date

  2004-04-19

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00248-003-1000-4PMID 15085298
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Molecular and Culture-Based Analyses of Prokaryotic Communities from an Agricultural Soil and the Burrows and Casts of the Earthworm Lumbricus rubellus

  2002cited by this paper
• The RDP-II (Ribosomal Database Project)

  2001cited by this paper
• Quantitative and qualitative microscale distribution of bacteria in soil.

  2001cited by this paper
• Sources and composition of soil organic matter fractions between and within soil aggregates

  2001cited by this paper
• Short-term changes in the spatial distribution of microorganisms in soil aggregates as affected by glucose addition

  2001cited by this paper
• Microbial Population Structures in Soil Particle Size Fractions of a Long-Term Fertilizer Field Experiment

  2001cited by this paper
• Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities

  2001cited by this paper
• Investigation of Candidate Division TM7, a Recently Recognized Major Lineage of the Domain Bacteria with No Known Pure-Culture Representatives

  2001cited by this paper
• Heterogeneous Cell Density and Genetic Structure of Bacterial Pools Associated with Various Soil Microenvironments as Determined by Enumeration and DNA Fingerprinting Approach (RISA)

  2000cited by this paper
• Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian arid soils.

  2000cited by this paper
• Soil macroaggregate turnover and microaggregate formation: a mechanism for C sequestration under no-tillage agriculture

  2000cited by this paper
• Nature of organic carbon and nitrogen in physically protected organic matter of some Australian soils as revealed by solid-state 13C and 15N NMR spectroscopy

  2000cited by this paper
• Soil structure and organic matter: I. Distribution of aggregate-size classes and aggregate-associated carbon.

  2000cited by this paper
• Molecular Analysis of Bacterial Community Structure and Diversity in Unimproved and Improved Upland Grass Pastures

  1999cited by this paper
• Aggregate and Soil Organic Matter Dynamics under Conventional and No-Tillage Systems

  1999cited by this paper
• Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil

  1997cited by this paper
• Soil structure and biological activity

  1996cited by this paper
• Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method

  1996cited by this paper
• Molecular phylogenetic analysis of a soil microbial community in a soybean field

  1995cited by this paper
• Beyond the Biomass.

  1995cited by this paper
• High energy ultraviolet photo‐oxidation: a novel technique for studying physically protected organic matter in clay‐ and silt‐sized aggregates

  1993cited by this paper
• Changes in bacterial populations along roots of wheat (Triticum aestivum L.) seedlings

  1991cited by this paper
• Nucleic acid techniques in bacterial systematics

  1991cited by this paper
• 16S/23S rRNA sequencing

  1991cited by this paper
• Changes in the microbial community and physico‐chemical characteristics of topsoils stockpiled during opencast mining

  1989cited by this paper
• Soil aggregates as microhabitats of microorganisms

  1988cited by this paper
• Distribution of microbial biomass and its activity in different soil aggregate size classes as affected by cultivation

  1988cited by this paper
• Soil organic matter and structural stability: mechanisms and implications for management

  1984cited by this paper
• Organic matter and water‐stable aggregates in soils

  1982cited by this paper
• The physical environment in soil microbiology: an attempt to extend principles of microbiology to soil microoganisms.

  1976cited by this paper

• Two pathways for reducing soil aggregate organic carbon mineralisation via minimum tillage under a long-term field experiment.

  2025cites this paper
• Biosolids blended with edaphic supports mimic structural and biochemical features of natural soils and foster plant biomass growth

  2025cites this paper
• Stochastic and deterministic assembly processes of bacterial communities in different soil aggregates

  2024cites this paper
• A pore-scale investigation of soil aggregate structure responding to freeze-thaw cycles using X-ray computed microtomography

  2023cites this paper
• Integrated aggregate turnover and soil organic carbon sequestration using rare earth oxides and 13C isotope as dual tracers

  2023cites this paper
• Effect of organic amendments on soil structure, microbial community and water transport in the Qinghai Lake watershed, North-Eastern Qinghai–Tibet Plateau

  2023cites this paper
• Architecture of soil microaggregates: Advanced methodologies to explore properties and functions

  2023cites this paper
• Long-term adoption of bed planted conservation agriculture based maize/cotton-wheat system enhances soil organic carbon stabilization within aggregates in the indo-gangetic plains

  2023cites this paper
• The microbiome structure of decomposing plant leaves in soil depends on plant species, soil pore sizes, and soil moisture content

  2023cites this paper
• Litter Inputs Control the Pattern of Soil Aggregate-Associated Organic Carbon and Enzyme Activities in Three Typical Subtropical Forests

  2022cites this paper
• Heterogeneity of Organic Matter of Aggregates of Protocalcic Chernozems

  2022cites this paper
• Biotechnology of Microorganisms from Coal Environments: From Environmental Remediation to Energy Production

  2022cites this paper
• BactoTraits – A functional trait database to evaluate how natural and man-induced changes influence the assembly of bacterial communities

  2021cites this paper
• Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale

  2021cites this paper
• Soil quality of tea and apple plantations in Myanmar Kwee and Soe

  2021cites this paper
• The extracellular DNA can baffle the assessment of soil bacterial community, but the effect varies with microscale spatial distribution.

  2021cites this paper
• Role of Microbial Extracellular Polymeric Substances in Soil Fertility

  2021cites this paper
• Emerging threats to the stability of soil aggregates

  2021cites this paper
• Role of Soil Microorganisms in Carbon Sequestration

  2021cites this paper
• Soil quality of the tea and apple-growing sites in Mindat District, Chin state, Myanmar: A preliminary study

  2021cites this paper
• Micro-aggregation of a pristine grassland soil selects for bacterial and fungal communities and changes in nitrogen cycling potentials

  2021cites this paper
• Crop straw incorporation mediates the impacts of soil aggregate size on greenhouse gas emissions

  2021cites this paper
• Land use change from upland to paddy field in Mollisols drives soil aggregation and associated microbial communities

  2020cites this paper
• Deciphering Centimeter-Scale Microbial Biogeographic Patterns and Community Assembly Processes From A 3D Perspective

  2020cites this paper
• Drought accelerated recalcitrant carbon loss by changing soil aggregation and microbial communities in a subtropical forest

  2020cites this paper
• A walk on the dirt: Soil microbial forensics from ecological theory to the crime lab.

  2020cites this paper
• Soil aggregates by design: Manufactured aggregates with defined microbial composition for interrogating microbial activities in soil microhabitats

  2020cites this paper
• Effects of Land Use and Restoration on Soil Microbial Communities

  2019cites this paper
• Variations in the Compositions of Soil Bacterial and Fungal Communities Due to Microhabitat Effects Induced by Simulated Nitrogen Deposition of a Bamboo Forest in Wetland

  2019cites this paper
• Soil wet aggregate distribution and pore size distribution under different tillage systems after 16 years in the Loess Plateau of China

  2019cites this paper
• Understanding Soil Aggregate Dynamics and Its Relation With Land Use and Climate Change

  2019cites this paper
• Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin

  2019cites this paper
• Soil microhabitats mediate microbial response in organic reduced tillage cropping

  2019cites this paper
• Separate drivers for microbial carbon mineralization and physical protection of carbon

  2019cites this paper
• Microbial Diversity in Soil: Biological Tools for Abiotic Stress Management in Plants

  2019cites this paper
• Physical influence of microbial communities on the structure and occlusion of particulate organic matter in a sandy agricultural soil

  2018cites this paper
• Greatest soil microbial diversity found in micro-habitats

  2018cites this paper
• The influence of aggregate size fraction and horizon position on microbial community composition

  2018cites this paper
• Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation

  2018cites this paper
• DNA occurrence in organic matter fractions isolated from amended, agricultural soils

  2018cites this paper
• Estimation of method of Separation of Periphery and Inner Parts of Soil Aggregates by Mechanical Abrasion

  2018cites this paper
• Spatial organization of bacterial populations in response to oxygen and carbon counter-gradients in pore networks

  2018cites this paper
• Microaggregates in soils

  2018cites this paper
• Nitrite-Oxidizing Bacteria Community Composition and Diversity Are Influenced by Fertilizer Regimes, but Are Independent of the Soil Aggregate in Acidic Subtropical Red Soil

  2018cites this paper
• Soil pores and their contributions to soil carbon processes

  2017cites this paper
• Variable responses of ammonia oxidizers across soil particle-size fractions affect nitrification in a long-term fertilizer experiment

  2017cites this paper
• Interactive effects of compost, plants and earthworms on the aggregations of constructed Technosols

  2017cites this paper
• The microbial habitat in soil: scale, heterogeneity and functional consequences†

  2017cites this paper
• The Effects of Nitrogen Fertilizer on Soil Microbial Communities Under Conventional and Conservation Agricultural Managements in a Tropical Clay-Rich Ultisol

  2016cites this paper
• Two different microbial communities did not cause differences in occlusion of particulate organic matter in a sandy agricultural soil

  2016cites this paper
• Fatty‐Acid Profiles and Enzyme Activities in Soil Particle‐Size Fractions under Long‐Term Fertilization

  2016cites this paper
• Warming effects on biomass and composition of microbial communities and enzyme activities within soil aggregates in subtropical forest

  2016cites this paper
• Native rhizobacteria as biocontrol agents of Heterobasidion annosum s.s. and Armillaria mellea infection of Pinus radiata

  2016cites this paper
• Effect of tea plantation age on the distribution of soil organic carbon and nutrient within micro-aggregates in the hilly region of western Sichuan, China

  2016cites this paper
• Enzymatic activity inside and outside of water-stable aggregates in soils under different land use

  2016cites this paper
• Separation of soil microbial community structure by aggregate size to a large extent under agricultural practices during early pedogenesis of a Mollisol

  2015cites this paper
• A novel alphaproteobacterial ectosymbiont promotes the growth of the hydrocarbon-rich green alga Botryococcus braunii

  2015cites this paper
• Bacterial biogeography of the rare Charitable Research Reserve

  2015cites this paper
• The structure of microbial community in aggregates of a typical chernozem aggregates under contrasting variants of its agricultural use

  2015cites this paper
• Particulate organic carbon at reclaimed and unreclaimed post-mining soils and its microbial community composition

  2015cites this paper
• Intra-aggregate pore structure influences phylogenetic composition of bacterial community in macroaggregates

  2014cites this paper
• Heavy metal pollution decreases microbial abundance, diversity and activity within particle-size fractions of a paddy soil.

  2014cites this paper
• Soil microbial community responses to sulfadiazine-contaminated manure in different soil microhabitats

  2014cites this paper
• Soil aggregate isolation method affects measures of intra-aggregate extracellular enzyme activity

  2014cites this paper
• Soil Microflora Development in Post-mining Sites

  2013cites this paper
• Linking microbial community structure to β-glucosidic function in soil aggregates

  2013cites this paper
• Regulation of soil organic C mineralisation at the pore scale.

  2013cites this paper
• Soil fauna increase nitrogen loss in tilled soil with legume but reduce nitrogen loss in non-tilled soil without legume

  2013cites this paper
• Mineral composition and charcoal determine the bacterial community structure in artificial soils.

  2013cites this paper
• Recent Advances and Perspectives in Metagenomic Studies of Soil Microbial Communities

  2013cites this paper
• Contributions of soil biota to C sequestration varied with aggregate fractions under different tillage systems

  2013cites this paper
• Dynamics of bacterial communities in relation to soil aggregate formation during the decomposition of 13C-labelled rice straw

  2012cites this paper
• Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition

  2012cites this paper
• Conservation agriculture, improving soil quality for sustainable production systems?

  2012cites this paper
• Evaluation of the environmental specificity of Fluorescence In Situ Hybridization (FISH) using Fluorescence-Activated Cell Sorting (FACS) of probe (PSE1284)-positive cells extracted from rhizosphere soil.

  2012cites this paper
• Immediate Effects of Controlled Livestock Treatment on Reclaimed Natural Gas Well Pads

  2011cites this paper
• Soil-speci ¢ c limitations foraccess andanalysis of soilmicrobial communities bymetagenomics

  2011cites this paper
• Microbial properties of soil aggregates created by earthworms and other factors: spherical and prismatic soil aggregates from unreclaimed post-mining sites

  2011cites this paper
• A plant growth-promoting pseudomonad is closely related to the Pseudomonas syringae complex of plant pathogens.

  2011cites this paper
• Soil-specific limitations for access and analysis of soil microbial communities by metagenomics.

  2011cites this paper
• Microbial community composition and carbon cycling within soil microenvironments of conventional, low-input, and organic cropping systems.

  2011cites this paper
• Microbial biogeography at the soil pore scale

  2011cites this paper
• Landscape-Scale Variation in Soil Microbial Communities Across a Forested Watershed

  2011cites this paper
• Response and resilience of soil biocrust bacterial communities to chronic physical disturbance in arid shrublands

  2011cites this paper
• Diversité bactérienne des sols : accès aux populations à effectifs minoritaires "the rare biosphere"

  2010cites this paper
• Conservation Agriculture and Soil Carbon Sequestration: Between Myth and Farmer Reality

  2009cites this paper
• Complexity, climate change and soil carbon: A systems approach to microbial temperature response

  2009cites this paper
• The impact of increasing heavy metal stress on the diversity and structure of the bacterial and actinobacterial communities of metallophytic grassland soil

  2009cites this paper
• Importance of spatially structured environmental heterogeneity in controlling microbial community composition at small spatial scales in an agricultural field

  2009cites this paper
• Comparison of DNA‐ and RNA‐based bacterial community structures in soil exposed to 2,4‐dichlorophenol

  2009cites this paper
• Ageing processes and soil microbial community effects on the biodegradation of soil (13)C-2,4-D nonextractable residues.

  2009cites this paper
• The impact of zinc and lead concentrations and seasonal variation on bacterial and actinobacterial community structure in a metallophytic grassland soil

  2009cites this paper
• Soil aggregates in a tropical deciduous forest: effects on C and N dynamics, and microbial communities as determined by t-RFLPs

  2008cites this paper
• Microarray analysis of bacterial diversity and distribution in aggregates from a desert agricultural soil

  2008cites this paper
• Challenges of species distribution modeling belowground

  2008cites this paper
• How do grassland management history and bacterial micro-localisation affect the response of bacterial community structure to changes in aboveground grazing regime?

  2008cites this paper
• Microbial distribution in soils: physics and scaling

  2008cites this paper
• Soil Physical-Chemical-Biological Interfacial Interactions: An Overview

  2008cites this paper
• Complexity, global climate change and soil carbon cycling: Factors controlling the temperature response of microbial decomposition

  2008cites this paper
• Chapter 4 Microbial Distribution in Soils

  2008cites this paper