Automated Cell Lineage Construction: A Rapid Method to Analyze Clonal Development Established with Murine Neural Progenitor Cells

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Cell Cycle

• Publication date

  2006-01-17

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.4161/cc.5.3.2426PMID 16434878
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes

  2005cited by this paper
• p21 loss compromises the relative quiescence of forebrain stem cell proliferation leading to exhaustion of their proliferation capacity.

  2005cited by this paper
• Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces

  2005cited by this paper
• Selective Lengthening of the Cell Cycle in the Neurogenic Subpopulation of Neural Progenitor Cells during Mouse Brain Development

  2005cited by this paper
• Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections

  2004cited by this paper
• Cell output, cell cycle duration and neuronal specification: a model of integrated mechanisms of the neocortical proliferative process.

  2003cited by this paper
• Mean-shift blob tracking through scale space

  2003cited by this paper
• Level Set Methods and Fast Marching Methods

  2003cited by this paper
• ALES: Cell Lineage Analysis and Mapping of Developmental Events

  2003cited by this paper
• Simultaneous quantification of cell motility and protein-membrane-association using active contours.

  2002cited by this paper
• Tracking leukocytes in vivo with shape and size constrained active contours

  2002cited by this paper
• Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing

  2002cited by this paper
• Asymmetric inheritance of radial glial fibers by cortical neurons.

  2001cited by this paper
• Unique neuronal tracers show migration and differentiation of SVZ progenitors in organotypic slices.

  2001cited by this paper
• Two modes of radial migration in early development of the cerebral cortex

  2001cited by this paper
• Neurons derived from radial glial cells establish radial units in neocortex

  2001cited by this paper
• Timing of CNS cell generation: a programmed sequence of neuron and glial cell production from isolated murine cortical stem cells.

  2000cited by this paper
• Organotypic slice cultures for analysis of proliferation, cell death, and migration in the embryonic neocortex.

  1999cited by this paper
• Towards Automatic Construction of Cell-Lineage of C. elegans from Nomarski DIC Microscope Images.

  1999cited by this paper
• Intrinsic programs of patterned cell lineages in isolated vertebrate CNS ventricular zone cells.

  1998influential reference
• Multiassignment for tracking a large number of overlapping objects

  1997cited by this paper
• Live cell image segmentation

  1995cited by this paper
• Early ontogeny of the secondary proliferative population of the embryonic murine cerebral wall

  1995cited by this paper
• Motility and cytoskeletal organization of migrating cerebellar granule neurons

  1995cited by this paper
• Watersheds in Digital Spaces: An Efficient Algorithm Based on Immersion Simulations

  1991cited by this paper
• Abnormal cell lineages in mutants of the nematode Caenorhabditis elegans.

  1981cited by this paper
• Mutations that lead to reiterations in the cell lineages of C. elegans.

  1981cited by this paper
• A Threshold Selection Method from Gray-Level Histograms

  1979cited by this paper
• Post-embryonic cell lineages of the nematode, Caenorhabditis elegans.

  1977influential reference
• Post-embryonic development in the ventral cord of Caenorhabditis elegans.

  1976cited by this paper
• Illumination for computer generated pictures

  1975cited by this paper
• Integer Programming

  1972cited by this paper

• High-throughput three-dimensional characterization of the developing vertebrate retina

  2025cites this paper
• Tracking of Lineage Mass via Quantitative Phase Imaging and Confinement in Low Refractive Index Microwells

  2024influential citation
• TreeJ: an ImageJ plugin for interactive cell lineage reconstruction from static images

  2023cites this paper
• Machine learning enhanced cell tracking

  2023cites this paper
• No Cell Left behind: Automated, Stochastic, Physics-Based Tracking of Every Cell in a Dense, Growing Colony

  2022cites this paper
• Cell tracking in time-lapse microscopy image sequences

  2021cites this paper
• Biological Cell Tracking And Lineage Inference Via Random Finite Sets

  2021cites this paper
• Tracking bacteria at high density with FAST, the Feature-Assisted Segmenter/Tracker

  2021cites this paper
• Computerized cell tracking: Current methods, tools and challenges

  2020cites this paper
• Accounting for cell type hierarchy in evaluating single cell RNA-seq clustering

  2020cites this paper
• Spatial-Temporal Mitosis Detection in Phase-Contrast Microscopy via Likelihood Map Estimation by 3DCNN

  2020cites this paper
• Automated Cell Tracking Using Motion Prediction-Based Matching and Event Handling

  2020cites this paper
• Advanced technological tools to study multidrug resistance in cancer.

  2020cites this paper
• SCOTT: Shape-Location Combined Tracking with Optimal Transport

  2020cites this paper
• MPM: Joint Representation of Motion and Position Map for Cell Tracking

  2020cites this paper
• Automated deep lineage tree analysis using a Bayesian single cell tracking approach

  2020cites this paper
• Unsupervised Two-Path Neural Network for Cell Event Detection and Classification Using Spatiotemporal Patterns

  2019cites this paper
• Frontiers in developmental neurogenesis

  2019cites this paper
• Semi-supervised estimation of event temporal length for cell event detection

  2019cites this paper
• Cell mitosis event analysis in phase contrast microscopy images using deep learning

  2019cites this paper
• Online Neural Cell Tracking Using Blob-Seed Segmentation and Optical Flow

  2019influential citation
• Lens-free Video Microscopy for the Dynamic and Quantitative Analysis of Adherent Cell Culture.

  2018cites this paper
• A Survey on Linking of Cell Tracks Using Segmentation

  2018cites this paper
• Single cell approaches to study the interaction between normal and transformed cells in epithelial monolayers

  2018cites this paper
• High density cell tracking with accurate centroid detections and active area-based tracklet clustering

  2018cites this paper
• A Multi-Cell State Estimator Based on Contour Pheromone Field Prediction and Update

  2018cites this paper
• Cell fate simulation reveals cancer cell features in the tumor microenvironment

  2018cites this paper
• In vitro fate mapping of stem cell development at the single cell level

  2018cites this paper
• Mitosis Detecti Image Sequences of Stem Cell Populations: A Critical Review

  2018cites this paper
• Cell Tracking with Deep Learning and the Viterbi Algorithm

  2018cites this paper
• Learning to segment mouse embryo cells

  2017cites this paper
• A Survey of Visualization for Live Cell Imaging

  2017cites this paper
• No Cell Left Behind: Automated Physics-Based Tracking of Every Cell in a Dense and Growing Colony

  2017cites this paper
• Spatiotemporal Joint Mitosis Detection Using CNN-LSTM Network in Time-Lapse Phase Contrast Microscopy Images

  2017cites this paper
• Automated cell tracking identifies mechanically oriented cell divisions during Drosophila axis elongation

  2017cites this paper
• Multi-Grained Random Fields for Mitosis Identification in Time-Lapse Phase Contrast Microscopy Image Sequences

  2017cites this paper
• Local cellular neighborhood controls proliferation in cell competition

  2017cites this paper
• Fractal nature of hard carbon prepared from C60 fullerene

  2017cites this paper
• Cell tracking for cell image analysis

  2017cites this paper
• Stem cell motion-tracking by using deep neural networks with multi-output

  2017cites this paper
• A survey of visualisation for live cell imaging

  2017cites this paper
• An unsupervised long short-term memory neural network for event detection in cell videos

  2017cites this paper
• Neuron Segmentation Based on CNN with Semi-Supervised Regularization

  2016cites this paper
• Detect Cells and Cellular Behaviors in Phase Contrast Microscopy Images

  2016cites this paper
• A robust cell tracking framework by fusing global and local optimization algorithms

  2016cites this paper
• Measuring Process Dynamics and Nuclear Migration for Clones of Neural Progenitor Cells

  2016cites this paper
• Live Imaging of Adult Neural Stem Cells in Rodents

  2016cites this paper
• Non-rigid estimation of cell motion in calcium time-lapse images

  2016cites this paper
• Lineage mapper: A versatile cell and particle tracker

  2016cites this paper
• High-Throughput Live-Cell Imaging for Investigations of Cellular Heterogeneity in Corynebacterium glutamicum

  2016influential citation
• Associating approximate paths and temporal sequences of noisy detections: Application to the recovery of spatio-temporal cancer cell trajectories

  2016cites this paper
• Single-cell lineage tracking analysis reveals that an established cell line comprises putative cancer stem cells and their heterogeneous progeny

  2016cites this paper
• Outils d'analyse d'images et recalage d'individus pour l'étude de la morphogenèse animale et végétale

  2016cites this paper
• Ranking cell tracking systems without manual validation

  2015cites this paper
• CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data

  2015cites this paper
• Proof-reading guidance in cell tracking by sampling from tracking-by-assignment models

  2015cites this paper
• A Branching Process to Characterize the Dynamics of Stem Cell Differentiation

  2015cites this paper
• SPF-CellTracker: Tracking Multiple Cells with Strongly-Correlated Moves Using a Spatial Particle Filter

  2015cites this paper
• Cell Tracking Under Dense Cell Culture Conditions for Cell Behavior Analysis

  2015cites this paper
• Survey statistics of automated segmentations applied to optical imaging of mammalian cells

  2015influential citation
• Cell Detection From Redundant Candidate Regions Under Nonoverlapping Constraints

  2015cites this paper
• Cell Tracking Accuracy Measurement Based on Comparison of Acyclic Oriented Graphs

  2015cites this paper
• Global Linking of Cell Tracks Using the Viterbi Algorithm

  2015cites this paper
• Adaptive Segmentation of Cells and Particles in Fluorescent Microscope Image

  2015cites this paper
• ADAPTIVE SEGMENTATION OF CELLS AND PARTICLES IN FLUORESCENT MICROSCOPE IMAGE

  2015cites this paper
• Integrated 5-D Cell Tracking and Linked Analytics in the FARSIGHT Open Source Toolkit

  2015cites this paper
• OP-CBIO150365 3189..3197

  2015cites this paper
• Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING)

  2015cites this paper
• Parallel Processing Strategies for Cell Motility and Shape Analysis

  2015cites this paper
• A Method for Automatic Segmentation of Nuclei in Phase-Contrast Images Based on Intensity, Convexity and Texture

  2014cites this paper
• Label-free detection and dynamic monitoring of drug-induced intracellular vesicle formation enabled using a 2-dimensional matched filter

  2014cites this paper
• A benchmark for comparison of cell tracking algorithms

  2014cites this paper
• A Novel Multiple Hypothesis Based Particle Tracking Method for Clathrin Mediated Endocytosis Analysis Using Fluorescence Microscopy

  2014cites this paper
• A Unified Graphical Models Framework for Automated Mitosis Detection in Human Embryos

  2014cites this paper
• Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences

  2014cites this paper
• Extracting meaning from biological imaging data

  2014cites this paper
• Labour-Efficient In Vitro Lymphocyte Population Tracking and Fate Prediction Using Automation and Manual Review

  2014cites this paper
• Cell Lineage Construction of Neural Progenitor Cells

  2014cites this paper
• Towards High-Throughput Phenotypic and Systemic Profiling of in vitro Growing Cell Populations using Label-Free Microscopy and Spectroscopy : Applications in Cancer Pharmacology

  2014cites this paper
• A semi-local neighborhood-based framework for probabilistic cell lineage tracing

  2014cites this paper
• Framework for neurosphere growth modelling under phase-contrast microscopy. (méthodologie de modélisation de la croissance de neurosphères sous microscope à contraste de phase)

  2014cites this paper
• Computer Vision Based Tracking Of Biological Cells-A Review

  2014cites this paper
• TACTICS for bioimaging informatics and analysis of T Cells

  2014cites this paper
• Computer Vision Based Tracking Of Biological Cells-A

  2014cites this paper
• On measuring cell confluence in phase contrast microscopy

  2014cites this paper
• Measures for ranking cell trackers without manual validation

  2013cites this paper
• An analysis-synthesis approach for neurosphere modelisation under phase-contrast microscopy

  2013cites this paper
• Chapter 17: Bioimage Informatics for Systems Pharmacology

  2013cites this paper
• Toward an Automated System for the Analysis of Cell Behavior: Cellular Event Detection and Cell Tracking in Time-lapse Live Cell Microscopy

  2013cites this paper
• Cell tracking under high confluency conditions by candidate cell region detection-based association approach

  2013cites this paper
• GENEALOGIES : MUTUAL INFORMATION OF CAUSAL PATHS TO ANALYSE SINGLE CELL TRACKING DATA

  2013cites this paper
• Cell Segmentation and Tracking in Microfluidic Platform

  2013cites this paper
• Algorithmic analysis of drug induced apoptosis and proteasome inhibition in cancer cells based on time-lapse microscopy images

  2013cites this paper
• Design and analysis of an Event Indicator Function classifier for immune cell tracking applications

  2013influential citation
• Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan–Vese Model

  2013cites this paper
• Cancer Cell Detection and Tracking Based on Local Interest Point Detectors

  2013cites this paper
• A Novel Framework for Cellular Tracking and Mitosis Detection in Dense Phase Contrast Microscopy Images

  2013cites this paper
• Neural Development and Stem Cells

  2012cites this paper
• A Semi-Markov Model for Mitosis Segmentation in Time-Lapse Phase Contrast Microscopy Image Sequences of Stem Cell Populations

  2012cites this paper
• From time lapse-data to genealogic trees: Using different contrast mechanisms to improve cell tracking

  2012cites this paper