E. Ebrahimie

PROFILE

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Aliases
E Ebrahimie, E. Ebrahimie, Esmaeile Ebrahimie, Esmaeil Ebrahimie
Publication record
244 papers · 4,358 citations · H-index 34

PAPERS

Transcriptomic Signature of Lipid Production in Australian Aurantiochytrium sp. TC20
20251 citationsauthor #3
Comparative transcriptomic and biochemical analyses reveal candidate regulatory genes associated with early drought response signatures in contrasting rapeseed (Brassica napus) cultivars
20251 citationsauthor #5
The Oral Microbiome in Queensland Free-Ranging Koalas (Phascolarctos cinereus) and Its Association with Age and Periodontal Disease
20250 citationsauthor #2
Oral probiotic and postbiotic supplementation enhances the abundance of Lactobacillus acidophilus, Lactobacillus johnsonii, and Limosilactobacillus reuteri in both canine skin and gastrointestinal microbiota: insights from long-read 16S rRNA gene sequencing
20250 citationsauthor #3
Higher Dietary Fibre Increases the Faecal Microbiome Diversity of Golden Lion Tamarins (Leontopithecus rosalia)
20250 citationsauthor #4
The effect of daily oral probiotic and postbiotic supplementation on the canine skin microbiota: Insights from culture-dependent and long-read 16S rRNA gene sequencing methods.
20254 citationsauthor #3
Comprehensive transcriptomic meta-analysis unveils new responsive genes to methyl jasmonate and ethylene in Catharanthusroseus
20246 citationsauthor #5
Delivery of doxorubicin by Fe3O4 nanoparticles, reduces multidrug resistance gene expression in ovarian cancer cells.
20243 citationsauthor #3
Machine Learning for Early Detection of Plant Viruses: Analyzing Post-Infection Electrical Signal Patterns
20248 citationsauthor #2
Transcriptomic signature of cancer cachexia by integration of machine learning, literature mining and meta-analysis
20243 citationsauthor #2
Editorial: Exploring genetic characteristics and molecular mechanisms of host adaptation of viruses with artificial intelligence (AI) or (and) biological (BIO) approaches
20240 citationsauthor #3
A blood-based mRNA signature distinguishes people with Long COVID from recovered individuals
20249 citationsauthor #2
A Panel of miRNA Biomarkers Common to Serum and Brain-Derived Extracellular Vesicles Identified in Mouse Model of Amyotrophic Lateral Sclerosis
20245 citationsauthor #5
Crosstalk between short- and long-term calorie restriction transcriptomic signatures with anxiety-like behavior, aging, and neurodegeneration: implications for drug repurposing
20232 citationsauthor #2
Pattern discovery of long non‐coding RNAs associated with the herbal treatments in breast and prostate cancers
20230 citationsauthor #2
Phenotypic evaluation of feed efficiency, growth and carcass traits in native turkeys
20234 citationsauthor #4
Methyl jasmonate treatment reveals novel insights into lncRNA-mediated regulation of secondary metabolite biosynthesis pathways in Echinacea purpurea
202328 citationsauthor #6
Appraisals on the anticancer properties of Mentha species using bioassays and docking studies
20236 citationsauthor #6
Bunium Persicum Seeds Extract in Combination with Vincristine Mediates Apoptosis in MCF-7 Cells through Regulation of Involved Genes and Proteins Expression.
20236 citationsauthor #4
Gut Microbiota and Behavioural Issues in Production, Performance, and Companion Animals: A Systematic Review
202330 citationsauthor #4
Meta-analysis of integrated ChIP-seq and transcriptome data revealed genomic regions affected by estrogen receptor alpha in breast cancer
20232 citationsauthor #3
Integration of transcriptomic and metabolomic analyses to provide insights into response mechanisms to nitrogen and phosphorus deficiencies in soybean.
202218 citationsauthor #10
Apoptotic effects of human amniotic fluid mesenchymal stem cells conditioned medium on human MCF-7 breast cancer cell line
20228 citationsauthor #3
ODP571 Blockade of ErbB-2 Nuclear Function Induces the Interferon Signaling Pathway in Breast Cancer Models Resistant to Trastuzumab
20220 citationsauthor #6
Further insights into the association of the protein phosphatase gene ABI1 with drought and salinity stress responses in Brassica species
20224 citationsauthor #4
Long-Term Calorie Restriction Alters Anxiety-like Behaviour and the Brain and Adrenal Gland Transcriptomes of the Ageing Male Rat
202218 citationsauthor #5
Nitrogen and phosphorus deficiencies alter primary and secondary metabolites of soybean roots
20223 citationsauthor #10
Splice-disrupt genomic variants in prostate cancer
20224 citationsauthor #3
Identification and Functional Prediction of Circular Rnas in Grape Cluster Development
20220 citationsauthor #5
Meta-analysis highlights the key drought responsive genes in genes: PEPC and TaSAG7 are hubs response networks
20224 citationsauthor #4
The Essential Oil from Oliveria decumbens Vent. (Apiaceae) as Inhibitor of Breast Cancer Cell (MCF-7) Growth
20226 citationsauthor #6
Comparative transcriptome analysis of two contrasting resistant and susceptible Aegilops tauschii accessions to wheat leaf rust (Puccinia triticina) using RNA-sequencing
202221 citationsauthor #3
RNA-Seq Analyzing Reveals the Key Role of SVR3 Gene in Tolerating the Freezing Stress in Saccharum spontaneum
20220 citationsauthor #3
Agonist/antagonist compounds' mechanism of action on estrogen receptor-positive breast cancer: A system-level investigation assisted by meta-analysis
20225 citationsauthor #4
Transcriptome Analysis of Breast Muscle Reveals Pathways Related to Protein Deposition in High Feed Efficiency of Native Turkeys
20227 citationsauthor #4
Biocompatibility study of P (N-isopropylacrylamide)-based nanocomposite and its cytotoxic effect on HeLa cells as a drug delivery system for Cisplatin
20224 citationsauthor #6
Machine learning models effectively distinguish attention-deficit/hyperactivity disorder using event-related potentials
202222 citationsauthor #3
Pharmacokinetic profile and effect on the faecal microbiome of a single dose of pradofloxacin oral suspension in the rabbit (Oryctolagus cuniculus).
20213 citationsauthor #4
AFExNet: An Adversarial Autoencoder for Differentiating Breast Cancer Sub-Types and Extracting Biologically Relevant Genes
202112 citationsauthor #5
Image processing unravels the evolutionary pattern of SARS-CoV-2 against SARS and MERS through position-based pattern recognition
20215 citationsauthor #4
Prepubertal exposure to a high dose of cadmium induces hypothalamic injury through transcriptome profiling alteration and neuronal degeneration in female rats.
202110 citationsauthor #5
Molecular characterization of low pathogenic avian influenza H9N2 virus during co-circulation with newly-emerged highly pathogenic avian influenza H5N8 virus in Iran.
20210 citationsauthor #2
Systems Biology–Derived Genetic Signatures of Mastitis in Dairy Cattle: A New Avenue for Drug Repurposing
20216 citationsauthor #8
Evaluation of the Effectiveness of Herbal Components Based on Their Regulatory Signature on Carcinogenic Cancer Cells
20215 citationsauthor #4
The androgen receptor is a tumor suppressor in estrogen receptor–positive breast cancer
2021187 citationsauthor #10
Rule Discovery in Milk Content towards Mastitis Diagnosis: Dealing with Farm Heterogeneity over Multiple Years through Classification Based on Associations
202114 citationsauthor #1
A Transcription Regulatory Sequence in the 5′ Untranslated Region of SARS-CoV-2 Is Vital for Virus Replication with an Altered Evolutionary Pattern against Human Inhibitory MicroRNAs
202132 citationsauthor #6
Advances in understanding the specificity function of transporters by machine learning
202112 citationsauthor #1
New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean
20214 citationsauthor #2
The Restorative Effect of Human Amniotic Fluid Stem Cells on Spinal Cord Injury
20216 citationsauthor #5
New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean
20218 citationsauthor #2
Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis
20218 citationsauthor #1
An Integrative Analysis of The Micro-RNAs Contributing in Stemness, Metastasis and B-Raf Pathways in Malignant Melanoma and Melanoma Stem Cell
20215 citationsauthor #8
ABC Transporters are Hub Genes in Response of Resistant E. Coli ST131 to Ciprofloxacin
20211 citationsauthor #3
Porphyromonas spp., Fusobacterium spp., and Bacteroides spp. dominate microbiota in the course of macropod progressive periodontal disease
202122 citationsauthor #6
Resensitizing resistant Escherichia Coli ST131 to Macrolide using Fluoroquinolones ‎
20210 citationsauthor #3
Gene network analysis to determine the effect of hypoxia-associated genes on brain damages and tumorigenesis using an avian model
20214 citationsauthor #2
Molecular mechanisms of fat deposition: IL-6 is a hub gene in fat lipolysis, comparing thin-tailed with fat-tailed sheep breeds
202116 citationsauthor #5
Integration of meta-analysis and supervised machine learning for pattern recognition in breast cancer using epigenetic data
20217 citationsauthor #2
The Role of ABC Transporters in Ciprofloxacin Resistance of E. coli ST131
20210 citationsauthor #3
Achilles' Heel of SARS-CoV-2: Transcription Regulatory Sequence and Leader Sequence in 5’ Untranslated Region have Unique Evolutionary Patterns and are Vital for Virus Replication in Infected Human Cells
20201 citationsauthor #6
Experimental direct-contact transmission of influenza A/H9N2 virus in the guinea pig model in Iran
20200 citationsauthor #2
Whole genome re-sequencing reveals adaptation prior to the divergence of buffalo subspecies.
202013 citationsauthor #2
Splice-disrupt genomic variants in prostate cancer: Association of some splice-disrupt variants with advanced prostate cancer
20201 citationsauthor #3
The first report of the most important sequential differences between COVID-19 and MERS viruses by attribute weighting models, the importance of Nucleocapsid (N) protein
20206 citationsauthor #3
Genomic analysis of fluoroquinolone-susceptible phylogenetic group B2 extraintestinal pathogenic Escherichia coli causing infections in cats.
202017 citationsauthor #3
Transcriptome signature of two lactation stages in Ghezel sheep identifies using RNA-Sequencing
202017 citationsauthor #4
Molecular mechanisms of resistance to bovine mastitis
20206 citationsauthor #6
Abstract GS2-03: The androgen receptor is a tumour suppressor in estrogen receptor positive breast cancer
20200 citationsauthor #10
The use of the Heter-LP algorithm to reposition antibiotics for managing E. coli mastitis in dairy cattle
20200 citationsauthor #8
Stallion Sperm Integrity After Centrifugation to Reduce Seminal Plasma Concentration and Cool Storage for 4 days.
20206 citationsauthor #4
Transcriptome signature of the lactation process in a fat-tailed sheep identifies with integrative approach of RNA-Seq and Supervised Machine Learning models
20190 citationsauthor #4
Nuclear ErbB-2 activity modulates the interferon signaling pathway in breast cancer cells resistant to anti-ErbB-2 therapies
20190 citationsauthor #4
Deep learning in classifying cancer subtypes, extracting relevant genes and identifying novel mutations
20190 citationsauthor #5
Gibberellin causes wide transcriptional modifications in the early stage of grape cluster development.
201920 citationsauthor #3
Oxalate‐degrading bacteria, including Oxalobacter formigenes, colonise the gastrointestinal tract of healthy koalas (Phascolarctos cinereus) and those with oxalate nephrosis
20194 citationsauthor #4
Prediction of key regulators and downstream targets of E. coli induced mastitis
201920 citationsauthor #3
Genomic analysis reveals variant association with high altitude adaptation in native chickens
201915 citationsauthor #2
Insights from the Echinacea purpurea (L.) Moench transcriptome: Global reprogramming of gene expression patterns towards activation of secondary metabolism pathways
201912 citationsauthor #2
Identifying mutation positions in all segments of influenza genome enables better differentiation between pandemic and seasonal strains.
201911 citationsauthor #4
ANTI-proliferative transcriptional effects of medroxyprogesterone acetate in Estrogen receptor positive breast cancer cells are predominantly mediated by ThE progesterone receptor.
201916 citationsauthor #3
Isolation of 2-phenylethanol biosynthesis related gene and developmental patterns of emission of scent compounds in Persian musk rose (Rosa moschata Herrm.)
20192 citationsauthor #3
Integrative meta-analysis of transcriptomic responses to abiotic stress in cotton.
201971 citationsauthor #5
Tissue-specific transcriptional biomarkers in medicinal plants: Application of large-scale meta-analysis and computational systems biology.
201914 citationsauthor #2
Corrigendum: Cross-Species Meta-Analysis of Transcriptomic Data in Combination With Supervised Machine Learning Models Identifies the Common Gene Signature of Lactation Process
20191 citationsauthor #5
Comprehensive analysis of machine learning models for prediction of sub-clinical mastitis: Deep Learning and Gradient-Boosted Trees outperform other models
2019135 citationsauthor #3
Non‐coding and coding genomic variants distinguish prostate cancer, castration‐resistant prostate cancer, familial prostate cancer, and metastatic castration‐resistant prostate cancer from each other
201911 citationsauthor #3
Bidirectional and Opposite Effects of Naïve Mesenchymal Stem Cells on Tumor Growth and Progression
201923 citationsauthor #5
Unraveling the transcriptional complexity of compactness in sistan grape cluster.
201815 citationsauthor #3
Enhancement of anticancer activity by silibinin and paclitaxel combination on the ovarian cancer
201853 citationsauthor #5
SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs
20188 citationsauthor #5
Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis
201828 citationsauthor #8
Predicting academic performance by considering student heterogeneity
2018165 citationsauthor #4
Analysis of the Key Genes of Surfactin Production in Bacillus subtilis MJ 01 ( Isolated from Soil Contaminated Oil in South of Iran ) , Spizizenii , and 168 Isolates
20180 citationsauthor #2
A large-scale study of indicators of sub-clinical mastitis in dairy cattle by attribute weighting analysis of milk composition features: highlighting the predictive power of lactose and electrical conductivity
201865 citationsauthor #1
Integration of machine learning and meta-analysis identifies the transcriptomic bio-signature of mastitis disease in cattle
201895 citationsauthor #6
Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil
201821 citationsauthor #6
Network analysis of inflammatory responses to sepsis by neutrophils and peripheral blood mononuclear cells
201821 citationsauthor #3
Field effectiveness of highly pathogenic avian influenza H5N1 vaccination in commercial layers in Indonesia
201824 citationsauthor #9
The Magnitude of Androgen Receptor Positivity in Breast Cancer Is Critical for Reliable Prediction of Disease Outcome
201869 citationsauthor #8

TIMELINE

2003 56 citations

2006 53 citations

2007 61 citations

2008 35 citations

2009 3 citations

2010 131 citations

2011 244 citations

2012 123 citations

2013 358 citations

2014 548 citations

2015 412 citations

2016 258 citations

2017 259 citations

2018 791 citations

2019 355 citations

2020 67 citations

2021 367 citations

2022 124 citations

2023 78 citations

2024 34 citations

2025 6 citations

Unknown 0 citations

E. Ebrahimie

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