T. Abeel

Phylogenetic analysis reveals diversity in glycan biosynthesis in "Candidatus Accumulibacter".
20260 citationsauthor #2
Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species
20250 citationsauthor #7
Global diversity of enterococci and description of 18 previously unknown species
202424 citationsauthor #8
Simulated Design–Build–Test–Learn Cycles for Consistent Comparison of Machine Learning Methods in Metabolic Engineering
202333 citationsauthor #3
Global diversity of enterococci and description of 18 novel species
20236 citationsauthor #7
Global diversity of enterococci and description of 18 novel species
20230 citationsauthor #7
SHIP: identifying antimicrobial resistance gene transfer between plasmids
20235 citationsauthor #4
When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes
20230 citationsauthor #7
Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing
202311 citationsauthor #3
“How sweet are your strawberries?”: Predicting sugariness using non-destructive and affordable hardware
20233 citationsauthor #2
The effect of removing repeat-induced overlaps in de novo assembly
20230 citationsauthor #2
Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms
20238 citationsauthor #5
SAP: Synteny-aware gene function prediction for bacteria using protein embeddings
20231 citationsauthor #5
Catch me if you can: Capturing extracellular DNA transformation in mixed cultures via Hi-C sequencing
20220 citationsauthor #3
Identification of HLA-E Binding Mycobacterium tuberculosis–Derived Epitopes through Improved Prediction Models
202213 citationsauthor #15
Metagenomic-based surveillance systems for antibiotic resistance in non-clinical settings
202253 citationsauthor #4
Metagenomic profiling and transfer dynamics of antibiotic resistance determinants in a full-scale granular sludge wastewater treatment plant
202266 citationsauthor #6
HAT: haplotype assembly tool using short and error-prone long reads
20221 citationsauthor #5
Explainable artificial intelligence in forensics: Realistic explanations for number of contributor predictions of DNA profiles.
202123 citationsauthor #4
A comparative study of pan-genome methods for microbial organisms: Acinetobacter baumannii pan-genome reveals structural variation in antimicrobial resistance-carrying plasmids
202110 citationsauthor #2
The invasive parthenogenetic marbled crayfish Procambarus virginalis Lyko, 2017 gets foothold in Belgium
20217 citationsauthor #3
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities
202183 citationsauthor #11
Free-floating extracellular DNA: Systematic profiling of mobile genetic elements and antibiotic resistance from wastewater.
202095 citationsauthor #3
Computational Methods for Strain-Level Microbial Detection in Colony and Metagenome Sequencing Data
202090 citationsauthor #5
Emergence of novel SARS-CoV-2 variants in the Netherlands
202026 citationsauthor #2
First records of alien crayfish of the Procambarus acutus species complex in Belgium
20204 citationsauthor #3
An educational guide for nanopore sequencing in the classroom
202022 citationsauthor #12
A novel method to isolate free-floating extracellular DNA from wastewater for quantitation and metagenomic profiling of mobile genetic elements and antibiotic resistance genes
202010 citationsauthor #3
Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice
202073 citationsauthor #5
Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization
201947 citationsauthor #8
Alpaca: a kmer-based approach for investigating mosaic structures in microbial genomes
20193 citationsauthor #2
Evidence for Highly Variable, Region-Specific Patterns of T-Cell Epitope Mutations Accumulating in Mycobacterium tuberculosis Strains
20197 citationsauthor #5
QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data
201930 citationsauthor #7
Nanopore sequencing and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization
20199 citationsauthor #8
Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions
201940 citationsauthor #9
Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges
2019133 citationsauthor #4
Extensive global movement of multidrug-resistant M. tuberculosis strains revealed by whole-genome analysis
201927 citationsauthor #3
SynerClust: a highly scalable, synteny-aware orthologue clustering tool
201818 citationsauthor #7
Reply to Lee and Howden.
20180 citationsauthor #2
Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations
20188 citationsauthor #2
Laboratory evolution of a Saccharomyces cerevisiae x S. eubayanus hybrid under simulated lager-brewing conditions: genetic diversity and phenotypic convergence
20186 citationsauthor #9
Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs
201757 citationsauthor #9
Nanopore sequencing enables near-complete de novo assembly of 1 Saccharomyces cerevisiae reference strain CEN . PK 1137 D 2 3
20175 citationsauthor #11
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into emergence and spread of multidrug resistance
2017262 citationsauthor #4
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into emergence and spread of multidrug resistance
2017262 citationsauthor #5
Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics
201766 citationsauthor #2
Variants in RNA-Seq data show a continued mutation rate during strain preservation of Schizophyllum commune
20171 citationsauthor #5
Keynote Lectures (KL)
20170 citationsauthor #3
Patterns of Conservation and Diversification in the Fungal Polarization Network
201720 citationsauthor #4
Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D
2017100 citationsauthor #9
37. Evaluation of the influence of light conditions on crayfish welfare in intensive aquaculture
20166 citationsauthor #1
Schizophyllum commune has an extensive and functional alternative splicing repertoire
201623 citationsauthor #5
Karyollele specific expression in Agaricus Bisporus
20160 citationsauthor #8
Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction
201637 citationsauthor #4
Populations of latent Mycobacterium tuberculosis lack a cell wall: Isolation, visualization, and whole-genome characterization
201627 citationsauthor #2
Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Mycobacterium tuberculosis Belonging to the Euro-American S Lineage
20164 citationsauthor #2
Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus
201657 citationsauthor #7
Incorporation of black soldier fly larvae (hermetia illucens) in the diet of omega perch (therapon barcoo)
20160 citationsauthor #4
Methionine enrichment of artemia for application in burbot (lota lota) larviculture
20160 citationsauthor #2
Photoperiod affects light/dark preference and exploratory behaviour in noble crayfish (Astacus astacus)
20160 citationsauthor #1
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance
2016165 citationsauthor #4
Effect of illuminance and white light spectrum on growth performance in noble crayfish (Astacus astacus L.)
20160 citationsauthor #1
A low cost set-up to measure underwater spectral irradiance in aquaria
20160 citationsauthor #4
The effect of different nspase levels in the diet of nile tilapia (o. niloticus) on growth performance, feed utilization, and selected parameters reflecting energy metabolism and gut integrity
20160 citationsauthor #2
Normalizing alternate representations of large sequence variants across multiple bacterial genomes
20156 citationsauthor #4
Assessing the effect of different light conditions on crayfish welfare using a dark-light preference maze
20150 citationsauthor #1
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal
2015270 citationsauthor #2
The use of non starch polysaccharide degrading enzymes in Tilapia (O. Niloticus) nutrition: Determining dose-response
20151 citationsauthor #3
Pain perception in crayfish (Astacus astacus): empirical observations and ethical consequences
20150 citationsauthor #4
Fatal Nosocomial MDR TB Identified through Routine Genetic Analysis and Whole-Genome Sequencing
201538 citationsauthor #2
Fatal Nosocomial MDR TB Identified through Routine Genetic Analysis and Whole-Genome Sequencing
201538 citationsauthor #3
Evolution of extensively drug-resistant tuberculosis over four decades revealed by whole genome sequencing of Mycobacterium tuberculosis from KwaZulu-Natal, South Africa
201514 citationsauthor #2
The Search for a Noble Crayfish Diet
20140 citationsauthor #1
ORCAE, a wiki style genome annotation portal for eukaryotic genomes
20140 citationsauthor #3
The Upside of Failure: How Regional Student Groups Learn from Their Mistakes
201414 citationsauthor #4
Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction
201423 citationsauthor #2
A Generic Tool for Transcription Factor Target Gene Discovery in Arabidopsis Cell Suspension Cultures Based on Tandem Chromatin Affinity Purification1[W][OPEN]
201434 citationsauthor #2
Effect of commercial and vegetable diets on growth performance, survival rate and cheliped loss in noble crayfish (Astacus astacus L.) under intensive culture conditions
20141 citationsauthor #1
Early weaning of Burbot (Lota lota) in RAS
20140 citationsauthor #4
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
20147,711 citationsauthor #2
Nociception and pain perception in noble crayfish (Astacus astacus) using the novel object paradigm
20141 citationsauthor #2
ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development[W]
2014203 citationsauthor #12
Running title : Tandem chromatin affinity purification
20140 citationsauthor #2
Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities
201425 citationsauthor #4
Evolution of Invasion in a Diverse Set of Fusobacterium Species
2014115 citationsauthor #5
The Upside of Failure: How Regional Student Groups Learn from Their Mistakes
201414 citationsauthor #3
The Regional Student Group Program of the ISCB Student Council: Stories from the Road
201315 citationsauthor #3
The Mycobacterium tuberculosis regulatory network and hypoxia
2013424 citationsauthor #12
The Mycobacterium tuberculosis regulatory network and hypoxia
2013424 citationsauthor #11
Ten Simple Rules for Starting a Regional Student Group
201310 citationsauthor #4
Effect of different housing methods on specific growth rate, survival and cheliped loss in 2-summer-old noble crayfish (Astacus astacus L.) in a recirculating aquaculture system
20130 citationsauthor #1
Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator
20133 citationsauthor #2
The Spirit of Competition: To Win or Not To Win
20132 citationsauthor #3
The Regional Student Group program: stories from the road
20130 citationsauthor #3
ISCB Computational Biology Wikipedia Competition
201310 citationsauthor #6
Semantically linking molecular entities in literature through entity relationships
201219 citationsauthor #3
Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012
201213 citationsauthor #5
Growth performance and body composition of burbot Lota lota fed different diets with varying levels of crude protein and crude lipid
20120 citationsauthor #3
Opportunities for noble crayfish production in Belgium
20120 citationsauthor #1
ORCAE: online resource for community annotation of eukaryotes
2012195 citationsauthor #3

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