A. Arkin

Tu1190: ALTERED METABOLITES DIFFERENTIATE CROHN’S DISEASE FROM CONTROLS: A SYSTEMATIC REVIEW
20250 citationsauthor #7
Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide.
20243 citationsauthor #22
Domains of life sciences in spacefaring: what, where, and how to get involved
20246 citationsauthor #6
Metabolic alterations in Crohn's disease: A Systematic Review
20240 citationsauthor #8
Potential applications of microbial genomics in nuclear non-proliferation
20242 citationsauthor #4
Tu1730 HUMANIZED MODEL OF CROHN'S COLITIS ENGRAFTS MULTILINEAGE HUMAN IMMUNE CELLS AND MICROBIOTA TO RECAPITULATE CROHN'S DISEASE THERAPY
20240 citationsauthor #5
Genome-wide CRISPRi knockdown to map gene essentiality landscape in coliphages λ and P1
20232 citationsauthor #7
Geochemical constraints on bacteriophage infectivity in terrestrial environments
202320 citationsauthor #7
Barcoded overexpression screens in gut Bacteroidales identify genes with new roles in carbon utilization and stress resistance
20234 citationsauthor #8
Short Methionine Synthases
20230 citationsauthor #2
Microbial biomanufacturing for space-exploration—what to take and when to make
202341 citationsauthor #13
Many Families of Lids for TonB-dependent Transporters in Bacteroides
20232 citationsauthor #3
Multicopy suppressor screens reveal convergent evolution of single-gene lysis proteins
202315 citationsauthor #8
Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages
202321 citationsauthor #7
Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone
20238 citationsauthor #13
Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough
20235 citationsauthor #12
A fast comparative genome browser for diverse bacteria and archaea
20238 citationsauthor #2
Critical assessment of E. coli genome-scale metabolic model with high-throughput mutant fitness data
20234 citationsauthor #4
Mixed nitrate and metal contamination influences operational speciation of toxic and essential elements.
20232 citationsauthor #8
Engineering osmolysis susceptibility in Cupriavidus necator and Escherichia coli for recovery of intracellular products
20239 citationsauthor #4
EcoFun-MAP: An Ecological Function Oriented Metagenomic Analysis Pipeline
20221 citationsauthor #12
Deep surveys of transcriptional modules with Massive Associative K-biclustering (MAK)
20221 citationsauthor #5
Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments
20227 citationsauthor #19
Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics
202233 citationsauthor #3
Acetaminophen production in the edible, filamentous cyanobacterium Arthrospira platensis
20224 citationsauthor #8
Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase
20221 citationsauthor #17
A Phage Foundry Framework to Systematically Develop Viral Countermeasures to Combat Antibiotic-Resistant Bacterial Pathogens
202225 citationsauthor #2
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
202269 citationsauthor #17
Towards Environmental Control of Microbiomes
20222 citationsauthor #5
Eliminating Genes for a Two Component System Increases PHB Productivity in Cupriavidus basilensis 4G11 Under PHB Suppressing, Non-Stress Conditions
20222 citationsauthor #8
Complete Genome Sequence of Bacillus cereus Strain CPT56D-587-MTF, Isolated from a Nitrate- and Metal-Contaminated Subsurface Environment
20226 citationsauthor #10
Development of a Markerless Deletion Mutagenesis System in Nitrate-Reducing Bacterium Rhodanobacter denitrificans
202214 citationsauthor #10
Genotype to ecotype in niche environments: adaptation of Arthrobacter to carbon availability and environmental conditions
202222 citationsauthor #10
Interactive Analysis of Functional Residues in Protein Families
20226 citationsauthor #2
A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria
202218 citationsauthor #13
Parallel multicopy-suppressor screens reveal convergent evolution of phage-encoded single gene lysis proteins
20223 citationsauthor #8
Charting a narrow course for direct electron uptake-facilitated electromicrobial production
20220 citationsauthor #4
Global Analysis of Biomineralization Genes in Magnetospirillum magneticum AMB-1
20224 citationsauthor #3
Ten simple rules for getting and giving credit for data
202216 citationsauthor #4
Quantifying the local adaptive landscape of a nascent bacterial community
202228 citationsauthor #4
Reconfiguration of the Respiratory Tract Microbiome to Prevent and Treat Burkholderia Infection.
20220 citationsauthor #9
Genomic Features and Pervasive Negative Selection in Rhodanobacter Strains Isolated from Nitrate and Heavy Metal Contaminated Aquifer
202225 citationsauthor #15
A Simple, Cost-Effective, and Automation-Friendly Direct PCR Approach for Bacterial Community Analysis
202113 citationsauthor #4
Biofilm Interaction Mapping and Analysis (BIMA): A tool for deconstructing interspecific interactions in co-culture biofilms
20211 citationsauthor #12
GapMind for Carbon Sources: Automated annotations of catabolic pathways
20211 citationsauthor #3
Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology
202121 citationsauthor #12
Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater
20217 citationsauthor #10
Production of PHB From CO2-Derived Acetate With Minimal Processing Assessed for Space Biomanufacturing
202131 citationsauthor #7
A KBase Case Study on Genome-wide Transcriptomics and Plant Primary Metabolism in response to Drought Stress in Sorghum.
20216 citationsauthor #16
Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough
20216 citationsauthor #13
Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments
2021113 citationsauthor #13
Author Correction: A genomic catalog of Earth’s microbiomes
202116 citationsauthor #24
Evaluating the Cost of Pharmaceutical Purification for a Long-Duration Space Exploration Medical Foundry
202115 citationsauthor #7
Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium <named-content content-type='genus-species'>Desulfovibrio vulgaris</named-content> Hildenborough
20210 citationsauthor #13
Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
202110 citationsauthor #12
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.
202153 citationsauthor #6
Photovoltaics-Driven Power Production Can Support Human Exploration on Mars
202112 citationsauthor #5
Mapping the genetic landscape of biomineralization in Magnetospirillum magneticum AMB-1 with RB-Tnseq
20212 citationsauthor #3
iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
202116 citationsauthor #8
Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics
20216 citationsauthor #10
Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Pseudomonas Co-culture Biofilms
20212 citationsauthor #12
Space bioprocess engineering on the horizon
202124 citationsauthor #18
Bioinformatic Teaching Resources – For Educators, by Educators – Using KBase, a Free, User-Friendly, Open Source Platform
20218 citationsauthor #12
Large-scale Genetic Characterization of a Model Sulfate-Reducing Bacterium
20215 citationsauthor #12
Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357
202126 citationsauthor #5
Ecogenomics of groundwater viruses suggests niche differentiation linked to specific environmental tolerance
20200 citationsauthor #12
Systems-informed genome mining for electroautotrophic microbial production
202012 citationsauthor #3
High-throughput mapping of the phage resistance landscape in E. coli
2020144 citationsauthor #11
Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity
2020313 citationsauthor #17
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
2020202 citationsauthor #21
Molecular pharming to support human life on the moon, mars, and beyond
202034 citationsauthor #8
Draft Genome Sequence of Bacillus sp. Strain EB106-08-02-XG196, Isolated from High-Nitrate-Contaminated Sediment
20201 citationsauthor #8
Systematic Discovery of Salmonella Phage-Host Interactions via High-Throughput Genome-Wide Screens
20209 citationsauthor #7
In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations
20205 citationsauthor #17
Diverse Bacterial Genes Modulate Plant Root Association by Beneficial Bacteria
202023 citationsauthor #5
Publisher Correction: A genomic catalog of Earth’s microbiomes
20200 citationsauthor #24
A method for achieving complete microbial genomes and improving bins from metagenomics data
202034 citationsauthor #3
The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and microbes
202015 citationsauthor #19
Four Families of Folate-independent Methionine Synthases
202020 citationsauthor #3
Systematic discovery of pseudomonad genetic factors involved in sensitivity to tailocins
202051 citationsauthor #11
Systematic genome-wide querying of coding and non-coding functional elements in E. coli using CRISPRi
202023 citationsauthor #6
A genomic catalog of Earth’s microbiomes
2020685 citationsauthor #24
Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation
202016 citationsauthor #12
A quantitative framework reveals the ecological drivers of grassland soil microbial community assembly in response to warming
20203 citationsauthor #8
Publisher Correction: A genomic catalog of Earth’s microbiomes
202012 citationsauthor #24
The genetic basis of phage susceptibility, cross-resistance and host-range in Salmonella
202045 citationsauthor #11
Towards a Biomanufactory on Mars
202067 citationsauthor #43
Redefining fundamental concepts of transcription initiation in bacteria
2020129 citationsauthor #5
Selective carbon sources influence the end products of microbial nitrate respiration
20201 citationsauthor #9
The Role of Synthetic Biology in Atmospheric Greenhouse Gas Reduction: Prospects and Challenges
202037 citationsauthor #6
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
2020977 citationsauthor #8
Small and Mighty: Adaptation of the Superphylum Patescibacteria
20201 citationsauthor #17
Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature
202010 citationsauthor #7
Uncertainty Quantification in Bio-Manufacturing Processes for Martian Colonization
20190 citationsauthor #5
GapMind: Automated Annotation of Amino Acid Biosynthesis
201962 citationsauthor #3
Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics
20190 citationsauthor #7
Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria
201942 citationsauthor #8
New Pipeline for Multi-omics Data Integration and Discovery in KBase to Identify the Mechanism Driving Metabolic/OTU Dynamics in a Microbiome
20190 citationsauthor #1
Curated BLAST for Genomes
20198 citationsauthor #2
High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer.
201928 citationsauthor #10

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