Design of a compartmentalized shotgun assembler for the human genome

No abstract is available for this paper.

• Publication year

  2001

• Venue

  Intelligent Systems in Molecular Biology

• Publication date

  2001-06-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/bioinformatics/17.suppl_1.s132PMID 11473002
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• THE HUMAN GENOME

  2007cited by this paper
• Initial sequencing and analysis of the human genome

  2001cited by this paper
• The greedy path-merging algorithm for sequence assembly

  2001influential reference
• Rival Genome Sequencers Celebrate a Milestone Together

  2000cited by this paper
• A whole-genome assembly of Drosophila.

  2000cited by this paper
• LEDA: a platform for combinatorial and geometric computing

  1997cited by this paper
• Human whole-genome shotgun sequencing.

  1997cited by this paper
• Closure strategies for random DNA sequencing

  1991cited by this paper
• Basic local alignment search tool.

  1990influential reference
• Genomic mapping by fingerprinting random clones: a mathematical analysis.

  1988cited by this paper
• Sequence the Human Genome

  1986cited by this paper
• Nucleotide sequence of bacteriophage lambda DNA.

  1982cited by this paper
• Nucleotide sequence of bacteriophage fd DNA.

  1978cited by this paper
• DNA sequencing with chain-terminating inhibitors.

  1977cited by this paper
• Methods : A Companion to Methods in Enzymology

  year unknowncited by this paper

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• Biological Modeling and Simulation: A Survey of Practical Models, Algorithms, and Numerical Methods

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• An ORFome assembly approach to metagenomics sequences analysis.

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  2007cites this paper
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  2006cites this paper
• Solving repeat problems in shotgun sequencing

  2006cites this paper
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  2006cites this paper
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• Errors in sequence assembly and corrections

  2005cites this paper
• A Tool for Analyzing Mate Pairs in Assemblies (TAMPA)

  2005cites this paper
• BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison

  2005cites this paper
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  2005cites this paper
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  2005cites this paper
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  2005cites this paper
• Informatics (Computational Biology)

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• Shotgun Sequence Assembly

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• The Atlas genome assembly system.

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• Whole-genome shotgun assembly and comparison of human genome assemblies

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  2001cites this paper