ChromEvol: assessing the pattern of chromosome number evolution and the inference of polyploidy along a phylogeny.

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Molecular biology and evolution

• Publication date

  2014-07-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/molbev/msu122PMID 24710517
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Comparative analysis reveals that polyploidy does not decelerate diversification in fish

  2014cited by this paper
• “x” is not a bias, but a number with real biological significance

  2013cited by this paper
• Phylogeny of the Genus Chrysanthemum L.: Evidence from Single-Copy Nuclear Gene and Chloroplast DNA Sequences

  2012cited by this paper
• Maximum likelihood inference implies a high, not a low, ancestral haploid chromosome number in Araceae, with a critique of the bias introduced by 'x'.

  2012cited by this paper
• Phylogenetic analysis of Primula section Primula reveals rampant non-monophyly among morphologically distinct species.

  2012cited by this paper
• Polyploidy in fungi: evolution after whole-genome duplication

  2012cited by this paper
• Floral heteromorphy in Primula vulgaris: progress towards isolation and characterization of the S locus.

  2011cited by this paper
• Recently Formed Polyploid Plants Diversify at Lower Rates

  2011cited by this paper
• Probabilistic models of chromosome number evolution and the inference of polyploidy.

  2010influential reference
• Disentangling reticulate evolution in an arctic-alpine polyploid complex.

  2009cited by this paper
• Polyploidy and angiosperm diversification.

  2009cited by this paper
• Plants with double genomes might have had a better chance to survive the Cretaceous–Tertiary extinction event

  2009cited by this paper
• Systematics of Downingia (Campanulaceae) based on Molecular Sequence Data: Implications for Floral and Chromosome Evolution

  2009cited by this paper
• The frequency of polyploid speciation in vascular plants

  2009influential reference
• Chromosome numbers in plant cytotaxonomy: concepts and implications

  2008influential reference
• On Phylogenetic Tests of Irreversible Evolution

  2008cited by this paper
• Estimating a binary character's effect on speciation and extinction.

  2007cited by this paper
• KARYOTYPIC DIVERSITY AND SPECIATION IN AGRODIAETUS BUTTERFLIES

  2007cited by this paper
• Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

  2006cited by this paper
• Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

  2006cited by this paper
• Widespread genome duplications throughout the history of flowering plants.

  2006cited by this paper
• The primrose path to heterostyly.

  2006cited by this paper
• CONFOUNDING ASYMMETRIES IN EVOLUTIONARY DIVERSIFICATION AND CHARACTER CHANGE

  2006cited by this paper
• Molecular Phylogeny of Aristolochia sensu lato (Aristolochiaceae) based on Sequences of rbcL, matK, and phyA Genes, with Special Reference to Differentiation of Chromosome Numbers

  2006cited by this paper
• Polyploidy in vertebrate ancestry: Ohno and beyond

  2004cited by this paper
• Genome duplication, a trait shared by 22000 species of ray-finned fish.

  2003cited by this paper
• MrBayes 3: Bayesian phylogenetic inference under mixed models

  2003influential reference
• Maximum-likelihood phylogenetic analysis under a covarion-like model.

  2001cited by this paper
• Yesterday's polyploids and the mystery of diploidization

  2001cited by this paper
• PATHWAYS, MECHANISMS, AND RATES OF POLYPLOID FORMATION IN FLOWERING PLANTS

  1998cited by this paper
• Polyploidy : biological relevance

  1980cited by this paper
• Polyploidy in angiosperms: monocotyledons.

  1979cited by this paper
• Comparison of the predicted and observed secondary structure of T4 phage lysozyme.

  1975cited by this paper
• A new look at the statistical model identification

  1974influential reference
• Monte Carlo Sampling Methods Using Markov Chains and Their Applications

  1970cited by this paper
• Polyploidy in Primula farinosa L.

  1953cited by this paper
• CYTOLOGICAL CHARACTERISTICS ASSOCIATED WITH THE DIFFERENT GROWTH HABITS IN THE DICOTYLEDONS

  1938cited by this paper
• The Origin of Adaptations

  1929cited by this paper
• Recently Formed Polyploid Plants Diversify at Lower Rates Supporting Online Material

  year unknowninfluential reference

• Discovery of additional ancient genome duplications in yeasts.

  2026cites this paper
• Comparative karyotype analysis of Indian Dipcadi (Asparagaceae): insights on chromosome evolution and biogeography

  2025influential citation
• Biosystematic studies on the genus Polygonatum (Asparagaceae) VII. Plastome phylogeny and karyotype evolution

  2025influential citation
• Ancient polyploidization events influence the evolution of the ginseng family (Araliaceae)

  2025cites this paper
• Character reconstruction and re-circumscription of the genus Convolvulus L. (Convolvulaceae)

  2025cites this paper
• Phylogenetics of the supertribe Paulliniodae (Sapindaceae) with emphasis on chromosome evolution: Taxonomic implications including the new genus Acevedoa.

  2025cites this paper
• A deep dive into bryophyte genome space reveals opposing evolutionary trends in the sister lineages, mosses and liverworts

  2025influential citation
• The complex interplay between chromosome, climatic niche and morphological traits shapes the diversification of Carex (Cyperaceae).

  2025cites this paper
• Distinct patterns of genome size evolution in each bryophyte lineage are not correlated with whole genome duplication.

  2025cites this paper
• Ortho2Web: a workflow for disentangling the roles of hybridization and allopolyploidization in reticulation within Campanulaceae

  2025influential citation
• Rapid turnover of sex chromosomes is associated with speciation in Neotropical armored catfish Harttia (Siluriformes, Loricariidae)

  2025cites this paper
• Phylogeny and chromosomal differentiation in Cestreae (Solanaceae)

  2025cites this paper
• Discovery of additional ancient genome duplications in yeasts

  2025cites this paper
• Epilobieae genomes and the evolution of Myrtales

  2025cites this paper
• Bridging micro and macroevolution: insights from chromosomal dynamics in plants

  2025cites this paper
• Evolution of chromosome numbers in Cuphea (Lythraceae) reveals associations between morphological variation and polyploidy

  2024cites this paper
• Shark genome size evolution and its relationship with cellular, life-history, ecological, and diversity traits

  2024cites this paper
• Distribution patterns and driving factors of mixed-ploidy Actinidia species in China

  2024cites this paper
• Anatomy of a mega-radiation: Biogeography and niche evolution in Astragalus.

  2024cites this paper
• Chromosomal evolution, environmental heterogeneity, and migration drive spatial patterns of species richness in Calochortus (Liliaceae)

  2024cites this paper
• Cytomolecular trends in Chamaecrista Moench (Caesalpinioideae, Leguminosae) diversification

  2024influential citation
• Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication

  2024cites this paper
• A macroevolutionary role for chromosomal fusion and fission in Erebia butterflies

  2024cites this paper
• Phylogenetics, Taxonomy, and Chromosome Number Analysis of Sanvitalia (Asteraceae-Heliantheae-Zinniinae)

  2024influential citation
• A phylogenetic perspective of chromosome evolution in Formicidae.

  2024cites this paper
• ChromEvol v.3: modeling rate heterogeneity in chromosome number evolution

  2024cites this paper
• A chromosome-level genome of Lobelia seguinii provides insights into the evolution of Campanulaceae and the lobeline biosynthesis.

  2024cites this paper
• From Micro to Macro: Avian Chromosome Evolution is Dominated by Natural Selection

  2024cites this paper
• Shifts in Chromosome Evolution Rates Shape the Karyotype Patterns of Leafcutting Ants

  2024influential citation
• Evolutionary history written in tandem arrays – satellite repeats in the Lagoseris lineage of Crepis sensu lato (Asteraceae)

  2024cites this paper
• Ancient polyploidy and low rate of chromosome loss explain the high chromosome numbers of homosporous ferns

  2024cites this paper
• All tangled up: Unraveling phylogenetics and reticulate evolution in the vining ferns, Lygodium (Schizaeales).

  2024cites this paper
• The interplay between climatic niche evolution, polyploidy and reproductive traits explains plant speciation in the Mediterranean Basin: a case study in Centaurium (Gentianaceae)

  2024cites this paper
• Investigating historical drivers of latitudinal gradients in polyploid plant biogeography: A multiclade perspective.

  2024cites this paper
• Impact of polyploidization on genome evolution and phenotypic diversity in oil-tea Camellia

  2024cites this paper
• Evolutionary patterns of variations in chromosome counts and genome sizes show positive correlations with taxonomic diversity in tropical gingers.

  2024cites this paper
• Microchromosome fusions underpin convergent evolution of chameleon karyotypes.

  2023cites this paper
• A macroevolutionary role for chromosomal fusion and fission in Erebia butterflies

  2023cites this paper
• Chromosomal evolution in Cryptangieae Benth. (Cyperaceae): Evidence of holocentrism and pseudomonads

  2023cites this paper
• Chromosome number, genome size and heterochromatin evolution in diploid species of Ipomoea and related genera (Convolvulaceae: Convolvuloideae)

  2023cites this paper
• Resolving Deep Relationships and Revealing Ancient Whole-Genome Duplications in Pteridaceae using Transcriptomic Data

  2023cites this paper
• The Effect of Polyploidy and Mating System on Floral Size and the Pollination Niche in Brassicaceae

  2023cites this paper
• Drivers of diversification in Linum (Linaceae) by means of chromosome evolution: correlations with biogeography, breeding system and habit

  2023influential citation
• The Chromosome Counts Database (CCDB).

  2023cites this paper
• Doubling down on polyploidy.

  2023cites this paper
• The Impact of Chromosomal Rearrangements in Speciation: From Micro- to Macroevolution.

  2023cites this paper
• Macroevolutionary consequences of karyotypic changes in the neotropical Serrasalmidae fishes (Ostariophysi, Characiformes) diversification

  2023cites this paper
• Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage

  2023influential citation
• Anatomy of a mega-radiation: Biogeography and niche evolution in Astragalus

  2023cites this paper
• PloiDB: The plant ploidy database.

  2023cites this paper
• Using ChromEvol to Determine the Mode of Chromosomal Evolution.

  2023influential citation
• Karyotype Evolution in Triatominae (Hemiptera, Reduviidae): The Role of Chromosomal Rearrangements in the Diversification of Chagas Disease Vectors

  2023cites this paper
• Genome size estimation and its associations with body length, chromosome number and evolution in teleost fishes.

  2023cites this paper
• A non-homogenous model of chromosome-number evolution to reveal shifts in the transition patterns across the phylogeny.

  2023cites this paper
• PART OF A SPECIAL ISSUE ON POLYPLOIDY IN ECOLOGY AND EVOLUTION Down, then up: non-parallel genome size changes and a descending chromosome series in a recent radiation of the Australian allotetraploid plant species, Nicotiana section Suaveolentes (Solanaceae)

  2023cites this paper
• Chromosomal and genomic data in Neotropical Dorstenia species (Moraceae) and their relationships with African species

  2023cites this paper
• Inferring Chromosome Number Changes Along a Phylogeny Using chromEvol.

  2023cites this paper
• Karyotypic diversity: a neglected trait to explain angiosperm diversification?

  2023cites this paper
• Inference of Ancient Polyploidy from Genomic Data.

  2023cites this paper
• Relationship between fruit phenotypes and domestication in hexaploid populations of biribá (Annona mucosa) in Brazilian Amazonia

  2023cites this paper
• Contrasting Patterns of Genome Size Diversity in Island Endemic Artemisia (Asteraceae)

  2023cites this paper
• Phylogeny, biogeography, and character evolution of the genus Sophora s.l. (Fabaceae, Papilionoideae).

  2023cites this paper
• Chromosome Evolution in the Family Solanaceae

  2022cites this paper
• Polyploidy: its consequences and enabling role in plant diversification and evolution

  2022influential citation
• From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes

  2022cites this paper
• The Chromosome Number and rDNA Loci Evolution in Onobrychis (Fabaceae)

  2022cites this paper
• Cytotaxonomy of the endemic Karst and Danxia ferns in Adiantum (Pteridaceae)

  2022cites this paper
• Mega‐sized pericentromeric blocks of simple telomeric repeats and their variants reveal patterns of chromosome evolution in ancient Cycadales genomes

  2022cites this paper
• Cytogenetic Analysis of Two Species of Brachyhypopomus (Hypopomidae): New Inferences about Karyotypic Diversification of Grass Knifefish

  2022cites this paper
• Adaptive radiation in Orinus, an endemic alpine grass of the Qinghai-Tibet Plateau, based on comparative transcriptomic analysis.

  2022cites this paper
• Hybridization and genome duplication for early evolutionary success in the Asian Palmate group of Araliaceae

  2022influential citation
• Evolution of Chromosome Number in Wild Onions (Allium, Amaryllidaceae)

  2022cites this paper
• Chromosome Number and Genome Size Evolution in Brasolia and Sobralia (Sobralieae, Orchidaceae)

  2022cites this paper
• Phylogeny and biogeography of the northern temperate genus Dracocephalum s.l. (Lamiaceae)

  2022cites this paper
• The Evolution of Cytogenetic Traits in Cuscuta (Convolvulaceae), the Genus With the Most Diverse Chromosomes in Angiosperms

  2022cites this paper
• Molecular and Cytogenetic Analysis of rDNA Evolution in Crepis Sensu Lato

  2022cites this paper
• Rapid karyotypic evolution with high diploid number variation in a rare genus of bromeligenous frogs.

  2022cites this paper
• Interactions between breeding system and ploidy affect niche breadth in Solanum

  2022cites this paper
• Complex patterns of ploidy in a holocentric plant clade (Schoenus, Cyperaceae) in the Cape biodiversity hotspot.

  2022cites this paper
• Phylogenetic Reconstruction of the Ancestral Chromosome Number of the Genera Anochetus Mayr, 1861 and Odontomachus Latreille, 1804 (Hymenoptera: Formicidae: Ponerinae)

  2022cites this paper
• Out of the Himalaya-Hengduan Mountains: Phylogenomics and biogeography of the widely distributed Northern Hemisphere genus Polygonatum Mill. (Asparagaceae).

  2022cites this paper
• Phylogenomics, floral evolution, and biogeography of Lithospermum L. (Boraginaceae).

  2021cites this paper
• Animal chromosome counts reveal a similar range of chromosome numbers but with less polyploidy in animals compared to flowering plants

  2021cites this paper
• Rapid radiation of angraecoids (Orchidaceae, Angraecinae) in tropical Africa characterised by multiple karyotypic shifts under major environmental instability.

  2021cites this paper
• Polyploidy Expands the Range of Centaurium (Gentianaceae)

  2021cites this paper
• Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms

  2021cites this paper
• Broad variation in rates of polyploidy and dysploidy across flowering plants is correlated with lineage diversification

  2021cites this paper
• Tempo and mode in karyotype evolution revealed by a probabilistic model incorporating both chromosome number and morphology

  2021cites this paper
• Macroevolutionary insights into sedges (Carex: Cyperaceae): The effects of rapid chromosome number evolution on lineage diversification

  2021cites this paper
• Chromosomal evolution in seagrasses: Is the chromosome number decreasing?

  2021cites this paper
• State of the art in cytogenetics, insights into chromosome number evolution, and new C-value reports for the fern family Gleicheniaceae.

  2021cites this paper
• Chromosome numbers in Homalolepis Turcz. and their significance in Simaroubaceae evolution

  2021cites this paper
• Chromosome numbers and their evolutionary meaning in the Sapindales order: an overview

  2021cites this paper
• Descending Dysploidy and Bidirectional Changes in Genome Size Accompanied Crepis (Asteraceae) Evolution

  2021cites this paper
• Incongruences between nuclear and plastid phylogenies challenge the identification of correlates of diversification in Gentiana in the European Alpine System

  2021cites this paper
• Pre‐ and postzygotic mechanisms preventing hybridization in co‐occurring species of the Impatiens purpureoviolacea complex

  2021influential citation
• Paraphyly in the giant torrent-frogs (Anura: Hylodidae: Megaelosia ) and the description of a new genus

  2021cites this paper
• Incongruences between nuclear and plastid phylogenies challenge the identification of correlates of diversification in Gentiana in the European Alpine System

  2021influential citation
• Model Adequacy Tests for Likelihood Models of Chromosome-Number Evolution

  2020influential citation
• Chromosome number evolves at equal rates in holocentric and monocentric clades

  2020cites this paper