Overview of plant RNA dependent RNA polymerases in antiviral defense and gene silencing

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Indian Journal of Plant Physiology

• Publication date

  2017-12-22

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1007/s40502-017-0339-3
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Differential expression of cucumber RNA-dependent RNA polymerase 1 genes during antiviral defence and resistance.

  2018cited by this paper
• Roles of Dicer-Like Proteins 2 and 4 in Intra- and Intercellular Antiviral Silencing1[OPEN]

  2017influential reference
• A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms

  2017cited by this paper
• The poly(A) tail blocks RDR6 from converting self mRNAs into substrates for gene silencing

  2017cited by this paper
• The RNAs of RNA-directed DNA methylation.

  2017cited by this paper
• Expression analysis of argonaute, Dicer-like, and RNA-dependent RNA polymerase genes in cucumber (Cucumis sativus L.) in response to abiotic stress

  2017cited by this paper
• Interplays between Soil-Borne Plant Viruses and RNA Silencing-Mediated Antiviral Defense in Roots

  2016cited by this paper
• Plant dicer-like proteins: double-stranded RNA-cleaving enzymes for small RNA biogenesis

  2016cited by this paper
• A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis.

  2016cited by this paper
• Genome-Wide Identification of Dicer-Like, Argonaute, and RNA-Dependent RNA Polymerase Gene Families in Brassica Species and Functional Analyses of Their Arabidopsis Homologs in Resistance to Sclerotinia sclerotiorum

  2016cited by this paper
• A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway1

  2016influential reference
• Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing

  2016influential reference
• Dicer-independent RNA-directed DNA methylation in Arabidopsis

  2016cited by this paper
• Mobile small RNAs regulate genome-wide DNA methylation

  2016cited by this paper
• Primer-Dependent and Primer-Independent Initiation of Double Stranded RNA Synthesis by Purified Arabidopsis RNA-Dependent RNA Polymerases RDR2 and RDR6

  2015cited by this paper
• Genome-Wide Identification of the Dicer-Like, Argonaute, and RNA-Dependent RNA Polymerase Gene Families in Cucumber (Cucumis sativus L.)

  2015cited by this paper
• Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

  2015cited by this paper
• The expanding world of small RNAs in plants

  2015cited by this paper
• JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis.

  2015cited by this paper
• Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing.

  2015cited by this paper
• Identification, Characterization and Expression Profiling of Dicer-Like, Argonaute and RNA-Dependent RNA Polymerase Gene Families in Foxtail Millet

  2014cited by this paper
• Tomato yellow leaf curl virus resistance by Ty-1 involves increased cytosine methylation of viral genomes and is compromised by cucumber mosaic virus infection

  2014cited by this paper
• Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits.

  2014cited by this paper
• Identification of RNA silencing components in soybean and sorghum

  2014influential reference
• Comprehensive Analysis of Dicer-Like, Argonaute, and RNA-dependent RNA Polymerase Gene Families in Grapevine (Vitis Vinifera)

  2014cited by this paper
• Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis

  2014influential reference
• Salicylic acid and gentisic acid induce RNA silencing-related genes and plant resistance to RNA pathogens.

  2014cited by this paper
• Identification, Molecular Cloning and Expression Analysis of Five RNA-Dependent RNA Polymerase Genes in Salvia miltiorrhiza

  2014cited by this paper
• The Old and New Testaments of gene regulation

  2014cited by this paper
• Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice

  2014cited by this paper
• De Novo Transcriptome Sequence Assembly and Analysis of RNA Silencing Genes of Nicotiana benthamiana

  2013cited by this paper
• The Tomato Yellow Leaf Curl Virus Resistance Genes Ty-1 and Ty-3 Are Allelic and Code for DFDGD-Class RNA–Dependent RNA Polymerases

  2013cited by this paper
• The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs1[W][OA]

  2013cited by this paper
• Reconstructing de novo silencing of an active plant retrotransposon

  2013cited by this paper
• Regulation of RNA-Dependent RNA Polymerase 1 and Isochorismate Synthase Gene Expression in Arabidopsis

  2013cited by this paper
• Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway

  2013cited by this paper
• Expressional and regulatory characterization of Arabidopsis RNA-dependent RNA polymerase 1

  2013cited by this paper
• NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis.

  2012cited by this paper
• Involvement of RDR6 in short-range intercellular RNA silencing in Nicotiana benthamiana

  2012cited by this paper
• Characterization and functional analysis of GhRDR6, a novel RDR6 gene from cotton (Gossypium hirsutum L.).

  2012cited by this paper
• Cytoplasmic Arabidopsis AGO7 accumulates in membrane‐associated siRNA bodies and is required for ta‐siRNA biogenesis

  2012cited by this paper
• RDR1 and SGS3, Components of RNA-Mediated Gene Silencing, Are Required for the Regulation of Cuticular Wax Biosynthesis in Developing Inflorescence Stems of Arabidopsis1[W][OA]

  2012cited by this paper
• Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum.

  2012cited by this paper
• Silencing and Innate Immunity in Plant Defense Against Viral and Non-Viral Pathogens

  2012cited by this paper
• Intercellular and systemic movement of RNA silencing signals

  2011cited by this paper
• The Functions of RNA-Dependent RNA Polymerases in Arabidopsis

  2011influential reference
• Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize

  2011cited by this paper
• SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV

  2011cited by this paper
• Small RNA-mediated epigenetic modifications in plants.

  2011cited by this paper
• RNA-Dependent RNA Polymerase 1 from Nicotiana tabacum Suppresses RNA Silencing and Enhances Viral Infection in Nicotiana benthamiana[W]

  2010cited by this paper
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010influential reference
• The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci[W][OA]

  2010cited by this paper
• siRNA–Mediated Methylation of Arabidopsis Telomeres

  2010influential reference
• Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

  2010cited by this paper
• Control of female gamete formation by a small RNA pathway in Arabidopsis

  2010cited by this paper
• Arabidopsis RNA-Dependent RNA Polymerases and Dicer-Like Proteins in Antiviral Defense and Small Interfering RNA Biogenesis during Turnip Mosaic Virus Infection[W][OA]

  2010influential reference
• JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis.

  2010cited by this paper
• Isolation, expression and functional analysis of a putative RNA-dependent RNA polymerase gene from maize (Zea mays L.)

  2010cited by this paper
• NgRDR1, an RNA-dependent RNA polymerase isolated from Nicotiana glutinosa, was involved in biotic and abiotic stresses.

  2009cited by this paper
• RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway.

  2009cited by this paper
• Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups.

  2009cited by this paper
• Gene silencing induced by hairpin or inverted repeated sense transgenes varies among promoters and cell types.

  2009cited by this paper
• RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana

  2009influential reference
• RNA Polymerase V transcription guides ARGONAUTE4 to chromatin

  2009cited by this paper
• The influence of RNA-dependent RNA polymerase 1 on potato virus Y infection and on other antiviral response genes.

  2009cited by this paper
• At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana

  2008cited by this paper
• Evolution of Arabidopsis MIR genes generates novel microRNA classes

  2008influential reference
• Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice

  2008cited by this paper
• Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes.

  2008cited by this paper
• Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata

  2008cited by this paper
• DICER-LIKE2 Plays a Primary Role in Transitive Silencing of Transgenes in Arabidopsis

  2008cited by this paper
• A structural-maintenance-of-chromosomes hinge domain–containing protein is required for RNA-directed DNA methylation

  2008cited by this paper
• An SNF2 Protein Associated with Nuclear RNA Silencing and the Spread of a Silencing Signal between Cells in Arabidopsis[W][OA]

  2007cited by this paper
• Specialization and evolution of endogenous small RNA pathways

  2007cited by this paper
• RNA-directed RNA polymerase 1 (RdR1) mediates the resistance of Nicotiana attenuata to herbivore attack in nature.

  2007influential reference
• The dsRNA-binding protein DRB4 interacts with the Dicer-like protein DCL4 in vivo and functions in the trans-acting siRNA pathway

  2007cited by this paper
• Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

  2007cited by this paper
• Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells

  2007cited by this paper
• Post-transcriptional small RNA pathways in plants: mechanisms and regulations.

  2006cited by this paper
• MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.

  2006cited by this paper
• RNA interference‐inducing hairpin RNAs in plants act through the viral defence pathway

  2006cited by this paper
• An antagonistic function for Arabidopsis DCL2 in development and a new function for DCL4 in generating viral siRNAs

  2006cited by this paper
• The evolution and diversification of Dicers in plants

  2006cited by this paper
• Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

  2006cited by this paper
• Nomenclature and functions of RNA-directed RNA polymerases.

  2006influential reference
• Gardening the genome: DNA methylation in Arabidopsis thaliana

  2005cited by this paper
• DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.

  2005cited by this paper
• An RNA-Dependent RNA Polymerase Prevents Meristem Invasion by Potato Virus X and Is Required for the Activity But Not the Production of a Systemic Silencing Signal1[w]

  2005cited by this paper
• RDR6 Has a Broad-Spectrum but Temperature-Dependent Antiviral Defense Role in Nicotiana benthamiana

  2005cited by this paper
• Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis

  2005cited by this paper
• DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal

  2005cited by this paper
• Specific interactions between Dicer-like proteins and HYL1/DRB- family dsRNA-binding proteins in Arabidopsis thaliana

  2004cited by this paper
• Genetic and Functional Diversification of Small RNA Pathways in Plants

  2004cited by this paper
• RNase III enzymes and the initiation of gene silencing

  2004cited by this paper
• Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation.

  2004cited by this paper
• A natural variant of a host RNA-dependent RNA polymerase is associated with increased susceptibility to viruses by Nicotiana benthamiana.

  2004influential reference
• The Role of the Jasmonate Response in Plant Susceptibility to Diverse Pathogens with a Range of Lifestyles1[w]

  2004cited by this paper
• Transgene overexpression with cognate small interfering RNA in tobacco

  2004cited by this paper
• Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases

  2003cited by this paper
• RNAi: mammalian oocytes do it without RNA-dependent RNA polymerase.

  2003cited by this paper

• Biochemical Perspectives and Epigenetic Regulation: Insights from RNA Polymerase V in Arabidopsis thaliana

  2026cites this paper
• A transition from enemies to allies: how viruses improve drought resilience in plants

  2024cites this paper
• Recovery from virus infection: plant’s armory in action

  2023cites this paper
• Role of Stress in the Spread of Transposable Elements

  2021cites this paper
• Molecular biology of antiviral arms race between plants and viruses

  2021cites this paper
• Tobacco RDR1 affects the expression of defence related genes in Nicotiana benthamiana during geminivirus infection

  2020influential citation
• Tobacco RNA-dependent RNA polymerase 1 affects the expression of defence-related genes in Nicotiana benthamiana upon Tomato leaf curl Gujarat virus infection

  2020cites this paper
• In silico identification and characterization of AGO, DCL and RDR gene families and their associated regulatory elements in sweet orange (Citrus sinensis L.)

  2020cites this paper
• Identification of transcription factor binding sites on promoter of RNA dependent RNA polymerases (RDRs) and interacting partners of RDR proteins through in silico analysis

  2019cites this paper