Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Cell

• Publication date

  2005-12-29

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.cell.2005.11.035PMID 16377568PMCID PMC3137516
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A nuclear gene encoding mitochondrial Delta-pyrroline-5-carboxylate dehydrogenase and its potential role in protection from proline toxicity.

  2008cited by this paper
• Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

  2005cited by this paper
• Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation

  2005cited by this paper
• Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

  2005influential reference
• A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis.

  2005cited by this paper
• RNA Polymerase IV Directs Silencing of Endogenous DNA

  2005influential reference
• Elucidation of the Small RNA Component of the Transcriptome

  2005cited by this paper
• Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

  2005influential reference
• DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.

  2005cited by this paper
• microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

  2005influential reference
• ReviewMicroRNAs : Genomics , Biogenesis , Mechanism , and Function

  2004influential reference
• Global Identification of Human Transcribed Sequences with Genome Tiling Arrays

  2004cited by this paper
• Novel and Stress-Regulated MicroRNAs and Other Small RNAs from Arabidopsis

  2004influential reference
• Genetic and Functional Diversification of Small RNA Pathways in Plants

  2004influential reference
• RNA silencing in plants

  2004cited by this paper
• MicroRNAs: small RNAs with a big role in gene regulation

  2004cited by this paper
• The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing.

  2004cited by this paper
• Hydrogen peroxide mediates plant root cell response to nutrient deprivation.

  2004influential reference
• The Role of Δ1-Pyrroline-5-Carboxylate Dehydrogenase in Proline Degradationw⃞

  2004influential reference
• Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

  2004cited by this paper
• Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

  2004influential reference
• Arabidopsis RADICAL-INDUCED CELL DEATH1 Belongs to the WWE Protein–Protein Interaction Domain Protein Family and Modulates Abscisic Acid, Ethylene, and Methyl Jasmonate Responses

  2004cited by this paper
• SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.

  2004influential reference
• Role of the yeast acetyltransferase Mpr1 in oxidative stress: regulation of oxygen reactive species caused by a toxic proline catabolism intermediate.

  2004influential reference
• The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation.

  2004cited by this paper
• RNA Silencing Genes Control de Novo DNA Methylation

  2004cited by this paper
• Shedding Light on the Dark Side of the Genome: Overlapping Genes in Higher Eukaryotes

  2004cited by this paper
• The role of [Delta]1-pyrroline-5-carboxylate dehydrogenase in proline degradation.

  2004influential reference
• Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats.

  2004influential reference
• Mechanisms of gene silencing by double-stranded RNA

  2004influential reference
• Control of leaf morphogenesis by microRNAs

  2003cited by this paper
• Role of MicroRNAs in Plant and Animal Development

  2003influential reference
• The small RNA profile during Drosophila melanogaster development.

  2003cited by this paper
• Asymmetry in the assembly of the RNAi enzyme complex.

  2003cited by this paper
• Functional siRNAs and miRNAs exhibit strand bias.

  2003cited by this paper
• A biochemical framework for RNA silencing in plants.

  2003cited by this paper
• MicroRNA pathways in flies and worms: growth, death, fat, stress, and timing.

  2003influential reference
• Asymmetry in the Assembly of the RNAi Enzyme Complex

  2003cited by this paper
• Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

  2003cited by this paper
• DICER-LIKE1: blind men and elephants in Arabidopsis development.

  2002cited by this paper
• CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.

  2002cited by this paper
• MicroRNAs in plants.

  2002cited by this paper
• A Plant Gene Up-Regulated at Rust Infection Sites

  2002cited by this paper
• Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNA

  2002influential reference
• RNA interference

  2002influential reference
• Salt and drought stress signal transduction in plants.

  2002cited by this paper
• Regulation of Heterochromatic Silencing and Histone H3 Lysine-9 Methylation by RNAi

  2002cited by this paper
• Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.

  2000cited by this paper
• Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

  2000cited by this paper
• DNA methylation and chromatin structure affect transcriptional and post-transcriptional transgene silencing in Arabidopsis.

  2000cited by this paper
• RNA Interference

  2000influential reference
• Hypersensitivity of an Arabidopsis sugar signaling mutant toward exogenous proline application.

  2000cited by this paper
• A species of small antisense RNA in posttranscriptional gene silencing in plants.

  1999cited by this paper
• Products of Proline Catabolism Can Induce Osmotically Regulated Genes in Rice

  1998cited by this paper
• Transient expression in Arabidopsis thaliana protoplasts derived from rapidly established cell suspension cultures

  1993cited by this paper

• Agave triangularis Transcriptome Reveals Candidate SRO Genes Involved in Leaf Development and Stress Response of Agave

  2026cites this paper
• Regulatory Landscapes of Non-Coding RNAs During Drought Stress in Plants

  2025cites this paper
• A critical review on epigenetics and epigenomics in plant development and stress resilience

  2025cites this paper
• ncRNAs Regulation of Salt and Drought Resistance in Camels

  2025cites this paper
• Small Interfering RNAs as Critical Regulators of Plant Life Process: New Perspectives on Regulating the Transcriptomic Machinery

  2025influential citation
• Broadening the Nicotiana benthamiana research toolbox through the generation of dicer-like mutants using CRISPR/Cas9 approaches.

  2025cites this paper
• A review of the advances and perspectives in sequencing technologies for analysing plant epigenetic responses to abiotic stress

  2025cites this paper
• Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA production

  2025influential citation
• lncRNA1471 mediates tomato-ripening initiation by binding to the ASR transcription factor.

  2025cites this paper
• Epigenetic and experimental approaches influencing non-coding RNAs.

  2025cites this paper
• Advances in Understanding the Functional Diversity of Noncoding RNAs in Plants: Insights from Recent Studies

  2025cites this paper
• Epigenetic Regulation of Salt Stress Responses in Rice: Mechanisms and Prospects for Enhancing Tolerance

  2025cites this paper
• RNA interference shapes stress responses in Arabidopsis thaliana

  2025cites this paper
• Beyond osmoprotection: the expanding roles of proline in plant signalling and development.

  2025cites this paper
• Identification and Analysis Long Noncoding RNA in Response to Cold Stress in Cucumber

  2025cites this paper
• Analysis of SRO gene family in Nitraria sibirica Pall. and the function of NsSRO1a in improving plant drought tolerance.

  2025cites this paper
• A cis-natural antisense RNA regulates alternative polyadenylation of SlSPX5 under Pi starvation in tomato

  2025cites this paper
• Non‐coding RNAs in plant stress responses: molecular insights and agricultural applications

  2025cites this paper
• Noncoding RNAs as Tools for Advancing Translational Biology in Plants.

  2025cites this paper
• Classification of and detection techniques for RNAi-induced effects in GM plants

  2025cites this paper
• Advances in Small RNA Regulation of Female Gametophyte Development in Flowering Plants

  2025influential citation
• A Soybean Pyrroline-5-Carboxylate Dehydrogenase GmP5CDH1 Modulates Plant Growth and Proline Sensitivity

  2024cites this paper
• Molecular Manipulation of the miR160/AUXIN RESPONSE FACTOR Expression Module Impacts Root Development in Arabidopsis thaliana

  2024cites this paper
• The biogenesis, regulation and functions of transitive siRNA in plants

  2024cites this paper
• Identification of RNAi-Related Genes and Transcriptome Assembly of Loblolly Pine (Pinus taeda, L.) Seedlings Exposed to Insect-Specific dsRNA

  2024cites this paper
• Genome-wide view and characterization of natural antisense transcripts in Cannabis Sativa L

  2024cites this paper
• Revealing critical mechanisms in determining sorghum resistance to drought and salt using mRNA, small RNA and degradome sequencing

  2024cites this paper
• Transcriptional junk: Waste or a key regulator in diverse biological processes?

  2024cites this paper
• Broad‐scale phenotyping in Arabidopsis reveals varied involvement of RNA interference across diverse plant‐microbe interactions

  2024cites this paper
• Ds transposon inserted into a sequence of putative natural antisense transcript (NAT) in candidate of drought-tolerant rice mutant

  2024cites this paper
• A novel perspective on the role of long non-coding RNAs in regulating polyphenols biosynthesis in methyl jasmonate-treated Siraitia grosvenorii suspension cells

  2024cites this paper
• Divergence in MiRNA targeting of AchAco and its role in citrate accumulation in kiwifruit

  2024cites this paper
• Small and long non-coding RNAs: Past, present, and future.

  2024cites this paper
• The Emerging Role of Non-Coding RNAs (ncRNAs) in Plant Growth, Development, and Stress Response Signaling

  2024cites this paper
• Comparative analysis of SIMILAR to RCD ONE (SRO) family from tetraploid cotton species and their diploid progenitors depict their significance in cotton growth and development

  2024cites this paper
• Pigmentation of soybean seed coats via mutation that abolishes production of multiple-phased siRNAs of the chalcone synthase gene.

  2024cites this paper
• Antisense transcription from stress-responsive transcription factors fine-tunes the cold response in Arabidopsis

  2024cites this paper
• The non-coding RNA SVALKA locus produces a cis-natural antisense transcript that negatively regulates the expression of CBF1 and biomass production at normal temperatures

  2023cites this paper
• The Functional Meaning of 5′UTR in Protein-Coding Genes

  2023cites this paper
• Assessment of proline function in higher plants under extreme temperatures.

  2023cites this paper
• Understanding the evolution of miRNA biogenesis machinery in plants with special focus on rice

  2023cites this paper
• Implications of small RNAs in plant development, abiotic stress response and crop improvement in changing climate

  2023cites this paper
• Dynamics of mRNA fate during light stress and recovery: from transcription to stability and translation

  2023cites this paper
• Biotinylated Tn5 transposase‐mediated CUT&Tag efficiently profiles transcription factor‐DNA interactions in plants

  2023cites this paper
• LncRNAs exert indispensable roles in orchestrating the interaction among diverse noncoding RNAs and enrich the regulatory network of plant growth and its adaptive environmental stress response

  2023cites this paper
• Differential expression of the genes encoding immune system components in response to Pseudomonas syringae and Pseudomonas aeruginosa in Arabidopsis thaliana

  2023cites this paper
• Identification of Germplasm and Sugar Transporter Gene ZmSWEET1b Associated with Salt Tolerance in Maize

  2023cites this paper
• Advances in the Study of the Transcriptional Regulation Mechanism of Plant miRNAs

  2023cites this paper
• The plant siRNA landscape

  2023cites this paper
• DNA-dependent RNA polymerases in plants

  2023cites this paper
• RNA-Based Control of Fungal Pathogens in Plants

  2023cites this paper
• Global identification of natural antisense transcripts in Gossypium hirsutum and Gossypium barbadense under chilling stress

  2023influential citation
• Epigenomics in stress tolerance of plants under the climate change

  2023cites this paper
• Salt stress responses in foxtail millet: Physiological and molecular regulation

  2023cites this paper
• Regulation of plant epigenetic memory in response to cold and heat stress: towards climate resilient agriculture

  2023cites this paper
• The Proteome and Phosphoproteome Uncovers Candidate Proteins Associated With Vacuolar Phosphate Signal Multipled by Vacuolar Phosphate Transporter 1 (VPT1) in Arabidopsis

  2023cites this paper
• Insertion of YFP at P5CS1 and AFL1 shows the potential, and potential complications, of gene tagging for functional analyses of stress-related proteins

  2023cites this paper
• Role of non-coding RNAs against salinity stress in Oryza species: Strategies and challenges in analyzing miRNAs, tRFs and circRNAs.

  2023cites this paper
• Genome-Wide Analysis of SIMILAR TO RCD ONE (SRO) Family Revealed Their Roles in Abiotic Stress in Poplar

  2023cites this paper
• Natural antisense transcript of MYOG regulates development and regeneration in skeletal muscle by shielding the binding sites of MicroRNAs of MYOG mRNA 3'UTR.

  2023cites this paper
• Altered expression levels of long non-coding natural antisense transcripts overlapping the UGT73C6 gene affect rosette size in Arabidopsis thaliana.

  2022cites this paper
• Physiological, biochemical and economic characteristics of transgenic winter wheat plants with RNA suppressor of the proline dehydrogenase gene

  2022cites this paper
• Cucumber STACHYOSE SYNTHASE is regulated by its cis-antisense RNA asCsSTS to balance source-sink carbon partitioning.

  2022cites this paper
• Variations in OsSPL10 confer drought tolerance by directly regulating OsNAC2 expression and ROS production in rice.

  2022cites this paper
• A genome-wide integrated analysis of lncRNA-mRNA in melanocytes from white and brown skin hair boer goats (Capra aegagrus hircus)

  2022cites this paper
• Unraveling the Epigenetic Landscape for Salt Tolerance in Plants

  2022cites this paper
• Antisense Transcription in Plants: A Systematic Review and an Update on cis-NATs of Sugarcane

  2022influential citation
• The pattern of DNA methylation alteration, and its association with the expression changes of non-coding RNAs and mRNAs in Moso bamboo under abiotic stress.

  2022cites this paper
• Non-coding RNAs fine-tune the balance between plant growth and abiotic stress tolerance

  2022cites this paper
• Tissue-specific transcriptomic analysis uncovers potential roles of natural antisense transcripts in Arabidopsis heat stress response

  2022cites this paper
• BPL3 binds the long noncoding RNA nalncFL7 to suppress FORKED-LIKE7 and modulate HAI1-mediated MPK3/6 dephosphorylation in plant immunity.

  2022cites this paper
• Agronomic Performance and Genetic Fidelity of the Selected Elite Cocoa Clones Derived from Somatic Embryogenesis Culture

  2022cites this paper
• Molecular Cloning, Characterization, and Expression Analysis of SIMILAR TO RCD-ONE (SRO) Family Genes Responding to Abiotic and Biotic Stress in Cucumber

  2022cites this paper
• Linking Reactive Oxygen Species (ROS) to Abiotic and Biotic Feedbacks in Plant Microbiomes: The Dose Makes the Poison

  2022cites this paper
• Roles of RNA silencing in viral and non-viral plant immunity and in the crosstalk between disease resistance systems

  2022cites this paper
• Recent Advances in Plant Gene Silencing Methods.

  2022cites this paper
• Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants

  2022cites this paper
• Recent advances in RNA structurome

  2022cites this paper
• The Multiverse of Plant Small RNAs: How Can We Explore It?

  2022cites this paper
• Bioinformatics analysis and core member identification of proline metabolism gene family in Brassica napus L.

  2022cites this paper
• Broad-spectrum fungal resistance in sorghum is conferred through the complex regulation of an immune receptor gene embedded in a natural antisense transcript

  2022cites this paper
• Plant Small RNAs: Their Biogenesis, Regulatory Roles, and Functions.

  2022cites this paper
• Analysis of mRNA-derived siRNAs in mutants of mRNA maturation and surveillance pathways in Arabidopsis thaliana

  2022cites this paper
• RNAi-Based Antiviral Innate Immunity in Plants

  2022cites this paper
• Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory.

  2022cites this paper
• Drought-tolerance of transgenic winter wheat with partial suppression of the proline dehydrogenase gene

  2022cites this paper
• Using Proline Metabolism Genes in Plant Genetic Engineering

  2022cites this paper
• Genome-Wide Identification and Evolutionary Analysis of the SRO Gene Family in Tomato

  2021cites this paper
• Proline metabolism as regulatory hub.

  2021cites this paper
• Proline dehydrogenase in cancer: apoptosis, autophagy, nutrient dependency and cancer therapy

  2021cites this paper
• The Novel Cucurbitaceae miRNA ClmiR86 Is Involved in Grafting-Enhanced Phosphate Utilization and Phosphate Starvation Tolerance in Watermelon

  2021cites this paper
• Regulatory short RNAs: A decade's tale for manipulating salt tolerance in plants.

  2021cites this paper
• Making sense of the natural antisense transcript puzzle.

  2021cites this paper
• Comprehensive Mechanism of Gene Silencing and Its Role in Plant Growth and Development

  2021cites this paper
• Regulatory non-coding RNAs: a new frontier in regulation of plant biology

  2021cites this paper
• Suppressor to Survival: RNAi as a Molecular Weapon in Arms Race Between Virus and Host

  2021cites this paper
• Influence of virus–host interactions on plant response to abiotic stress

  2021cites this paper
• Role of small RNA and RNAi technology toward improvement of abiotic stress tolerance in plants

  2021cites this paper
• Proteome-wide identification of S-sulfenylated cysteines in Brassica napus.

  2021cites this paper
• Comprehending lncRNA-mediated gene regulation during abiotic stresses and reproductive development in legumes

  2021cites this paper