Nitrite Reductase Genes (nirK andnirS) as Functional Markers To Investigate Diversity of Denitrifying Bacteria in Pacific Northwest Marine Sediment Communities

No abstract is available for this paper.

• Publication year

  2000

• Venue

  Applied and Environmental Microbiology

• Publication date

  2000-05-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/AEM.66.5.2096-2104.2000PMID 10788387PMCID PMC101460
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Sedimentary organic matter preservation : A test for selective degradation under oxic conditions

  1999cited by this paper
• PCR Detection of Genes Encoding Nitrite Reductase in Denitrifying Bacteria

  1999cited by this paper
• Diversity of Nitrous Oxide Reductase (nosZ) Genes in Continental Shelf Sediments

  1999cited by this paper
• Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments.

  1998cited by this paper
• Development of PCR Primer Systems for Amplification of Nitrite Reductase Genes (nirK and nirS) To Detect Denitrifying Bacteria in Environmental Samples

  1998influential reference
• Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount, Hawaii

  1998cited by this paper
• DNA markers : protocols, applications, and overviews

  1997cited by this paper
• The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations

  1997cited by this paper
• Diversity of the ribulose bisphosphate carboxylase/oxygenase form I gene (rbcL) in natural phytoplankton communities

  1997cited by this paper
• The Neisseria gonorrhoeae gene aniA encodes an inducible nitrite reductase

  1997cited by this paper
• Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA.

  1997cited by this paper
• Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes

  1997cited by this paper
• Phylogenetic analysis of the bacterial communities in marine sediments

  1996cited by this paper
• Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

  1996cited by this paper
• Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO).

  1996cited by this paper
• Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions.

  1995cited by this paper
• Extraction of microbial community DNA from soils

  1995cited by this paper
• Remarkable N2-fixing bacterial diversity detected in rice roots by molecular evolutionary analysis of nifH gene sequences

  1995cited by this paper
• Is the ocean losing nitrate?

  1995cited by this paper
• Pseudomonas aeruginosa nitrite reductase (or cytochrome oxidase): an overview.

  1994cited by this paper
• Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans

  1993cited by this paper
• Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers

  1993cited by this paper
• Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria

  1992cited by this paper
• Direct measurement of nitrogen gas fluxes from continental shelf sediments

  1991cited by this paper
• Denitrification in Soil and Sediment

  1990cited by this paper
• Denitrification In Aquatic Sediments

  1990cited by this paper
• Precise Measurement of the G+C Content of Deoxyribonucleic Acid by High-Performance Liquid Chromatography

  1989cited by this paper
• Phylogenies from molecular sequences: inference and reliability.

  1988cited by this paper
• 210Pb-derived sediment accumulation and mixing rates for the Washington continental slope

  1982influential reference
• Rhodopseudomonas sphaeroides forma sp. denitrificans, a denitrifying strain as a subspecies of Rhodopseudomonas sphaeroides

  1976cited by this paper
• Detection of specific sequences among DNA fragments separated by gel electrophoresis.

  1975cited by this paper
• Changes in size and secondary structure of the ribosomal transcription unit during vertebrate evolution.

  1975cited by this paper
• The Composition of Sea-Water

  year unknowncited by this paper

• Vegetation composition shapes denitrifier community structure and enhances nitrogen removal in estuarine wetlands: evidence from Reed-Willow Mix promoting nirK-dominated guilds

  2026cites this paper
• Uncovering the Prokaryotic Diversity of Hypersaline Soils of Odiel Saltmarshes Natural Area Through Metagenome-Assembled Genomes.

  2026cites this paper
• Biofilm Control in Wastewater Treatment: A Review Regarding the Application of Quorum Sensing and Quenching Processes and Future Perspectives

  2025cites this paper
• Taxonomic and functional stability of sedimentary microbial communities in a pristine upwelling-influenced coastal lagoon

  2025cites this paper
• Response characteristics of the microbial community, metabolic pathways, and anti-resistance genes under high nitrate and sulfamethoxazole stress in a fluidized sulfur autotrophic denitrification process.

  2025cites this paper
• Hollow fiber layout matters the denitrification performance and mechanism of H2-based membrane biofilm reactor: A comprehensive study of hydrodynamics, bioecology and biokinetics.

  2025cites this paper
• Organic carbon released from tire chips enhances pyrite particle-based autotrophic denitrification of water.

  2025cites this paper
• Diversity, antibiotic resistance, and biofilm profiling of the inhabitant bacteria of the Ganga River of India.

  2025cites this paper
• Soil GHG flux potentials and their microbiological mechanisms under urban forest and grassland

  2025cites this paper
• Synergistic effects of biochar and plants can reduce greenhouse gas emissions from salt affected soil

  2025cites this paper
• Nitrogen removal characteristics and mechanism of the aerobic denitrifying bacterium Stutzerimonas stutzeri os3 isolated from shrimp aquaculture sediment.

  2025cites this paper
• Unraveling microbial life from a high-altitude hydrothermal system in the Andes plateau and their potential for nitrogen transformations

  2025cites this paper
• Straw return enhances the global warming potential in paddy soil under the regulation of functional genes

  2025cites this paper
• The Aerobic Denitrification Characteristics of a Halophilic Marinobacter sp. Strain and Its Application in a Full-Scale Fly Ash-Washing Wastewater Treatment Plant

  2025cites this paper
• Mechanisms of lime-induced N2O mitigation in acidic soils: A meta-analysis of microbial activity and substrate dynamics

  2025cites this paper
• Anaerobic methane oxidation coupled with denitrification mitigates soil nitrous oxide emissions

  2025cites this paper
• Dynamics of inorganic nitrogen transformation in small greenhouse shrimp ponds: stage-dependent variations in photoautotrophic, autotrophic and heterotrophic ammonia removal

  2025cites this paper
• Quorum sensing-driven control of hydrogenotrophic biofilms: Toward energy-efficient wastewater treatment systems

  2025cites this paper
• Assessment of the ASM2d Two-Step Nitrification Model Across Different Seasons: Parameter Calibration, Microbial Analysis, and Model Validation

  2025cites this paper
• Copper contamination determined the impact of phages on microbially-driven nitrogen cycling in coastal wetland sediments.

  2025cites this paper
• Denitrification processes, inhibitors, and their implications in ground improvement

  2025cites this paper
• Niche differentiation of anaerobic ammonium-oxidizing bacteria and denitrifying bacteria in artificial and natural water-level fluctuation zones of the three gorges reservoir area.

  2025cites this paper
• Response of N2O emission and denitrifying genes to iron (II) supplement in root zone and bulk region during wetting-drying alternation in paddy soil

  2024cites this paper
• Bacterial Community Characteristics and Roles in Nitrogen Transformation in Industrial Farming Systems of Litopenaeus vannamei

  2024cites this paper
• The Effects of Mixed Robinia pseudoacacia and Quercus variabilis Plantation on Soil Bacterial Community Structure and Nitrogen-Cycling Gene Abundance in the Southern Taihang Mountain Foothills

  2024cites this paper
• The Predatory Properties of Bradymonabacteria, the Representative of Facultative Prey-Dependent Predators

  2024cites this paper
• Community Assembly Mechanisms of nirK- and nirS-type Denitrifying Bacteria in Sediments of Eutrophic Lake Taihu, China

  2024cites this paper
• Insights into the evolutionary and ecological adaption strategies of nirS‐ and nirK‐type denitrifying communities

  2024influential citation
• Insights into the Nitrogen Removal Mechanism of Heterotrophic Nitrification and Aerobic Denitrification Bacterium Delfitia sp. B7

  2024cites this paper
• Detection of Nitrate-Reducing/Denitrifying Bacteria from Contaminated and Uncontaminated Tallgrass Prairie Soil: Limitations of PCR Primers

  2024cites this paper
• Denitrification, anammox, and DNRA in oligotrophic continental shelf sediments

  2024cites this paper
• Characteristics of Nitrogen Removal and Functional Gene Transcription of Heterotrophic Nitrification-Aerobic Denitrification Strain, Acinetobacter sp. JQ1004

  2024cites this paper
• Comparative analyses on nitrogen removal microbes and functional genes within anaerobic–anoxic–oxic and deoxidation ditch sewage-treating processes in Wuhan and Xi’an cities, China

  2024cites this paper
• Removal efficiency and abundance of nitrogen cycling microorganism in three bio-matrix materials to treat swine wastewater

  2024cites this paper
• Roles of straw return in shaping denitrifying bacteria in rice rhizosphere soils through effects on root exudates and soil metabolites

  2024cites this paper
• Tomato domestication rather than subsequent breeding events reduces microbial associations related to phosphorus recovery

  2024cites this paper
• Diversity, community structure, and abundance of nirS-type denitrifying bacteria on suspended particulate matter in coastal high-altitude aquaculture pond water

  2024cites this paper
• Urea amendment decouples nitrification in hydrocarbon contaminated Antarctic soil.

  2024cites this paper
• Long-term operation and dynamic response of dissimilatory nitrate reduction to ammonium process under low-frequency infrared electromagnetic field

  2024cites this paper
• Ammonium-derived nitrous oxide is a global source in streams

  2024cites this paper
• Taxonomic and functional dynamics of nirS denitrifiers along a salinity gradient in the Pearl River Estuary

  2024cites this paper
• A novel biofilm reactor startup with HN-AD bacteria inoculation for high ammonia-salt wastewater treatment: Performance, microbial characteristics and salt-tolerant mechanism

  2024cites this paper
• Key Factors and Mechanisms of Microplastics Affecting Soil Nitrogen Transformation: A Review

  2024cites this paper
• Microbiome comparisons reveal the core microorganisms and key nitrogen metabolic pathway involved in industrial nitrogen fertilizer wastewater treatment plants

  2024cites this paper
• Feammox bacterial biofilm formation in HFMB.

  2024cites this paper
• Biological treatment of N-methylpyrrolidone, cyclopentanone, and diethylene glycol monobutyl ether distilled residues and their effects on nitrogen removal in a full-scale wastewater treatment plant.

  2024cites this paper
• Using static magnetic field to recover ammonia efficiently by DNRA process

  2024cites this paper
• Enhanced nitrogen removal by an isolated aerobic denitrifying strain in a vertical-flow constructed wetland.

  2024cites this paper
• Nitrification and Denitrification Gene Abundances under Stable Soil Chemical Properties Established by Long-Term Compost Fertilization

  2023cites this paper
• Particle-associated denitrification is the primary source of N2O in oxic coastal waters

  2023cites this paper
• Production of biochar from squeezed liquid of fruit and vegetable waste: Impacts on soil N2O emission and microbial community.

  2023cites this paper
• Effect of brine fermentation on nitrogen metabolism and microbial community of Allium chinense bulbs and identification of lactic acid bacteria with nitrite degradation function

  2023cites this paper
• Genome-resolved metagenomics reveals abundant nitrate reducers and partitioning of nitrite usage within global oxygen deficient zones

  2023cites this paper
• 4. BACTERIAL AND ARCHAEAL DNA FROM LAKE SEDIMENTS

  2023cites this paper
• Partitioning of the denitrification pathway and other nitrite metabolisms within global oxygen deficient zones

  2023cites this paper
• Insight into mechanisms of biochar-fertilizer induced of microbial community and microbiology of nitrogen cycle in acidic soil.

  2023cites this paper
• Long-Term Pollution Does Not Inhibit Denitrification and DNRA by Adapted Benthic Microbial Communities

  2023cites this paper
• An innovative bilayer solid carbon source for tertiary denitrification: Synthesis, performance, and microbial diversity analysis

  2023cites this paper
• Changes of Soil Nitrogen Fractions and nirS-Type Denitrifier Microbial Community in Response to N Fertilizer in the Semi-Arid Area of Northeast China

  2023cites this paper
• Cadaverine and putrescine exposure influence carbon and nitrogen cycling genes in water and sediment of the Yellow River.

  2023cites this paper
• Microbial compositional and functional traits of BTEX and salinity co-contaminated shallow groundwater by produced water.

  2022cites this paper
• Microbial response of the anammox process to trace antibiotic concentration

  2022cites this paper
• Nitrate removal by combining chemical and biostimulation approaches using micro-zero valent iron and lactic acid.

  2022cites this paper
• Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi

  2022cites this paper
• Adaptability of enhanced bioretention cell for nitrogen and phosphorus removal under two antibiotics stress.

  2022cites this paper
• Response of soil denitrification potential and community composition of denitrifying bacterial to different rates of straw return in north-central China

  2022cites this paper
• Differential Response of Bacterial Microdiversity to Simulated Global Change

  2022cites this paper
• Nitrogen fixation contribution to nitrogen cycling during cyanobacterial blooms in Utah Lake.

  2022cites this paper
• Global meta-analysis of terrestrial nitrous oxide emissions and associated functional genes under nitrogen addition

  2022cites this paper
• Heterotrophic nitrification-aerobic denitrification performance of a novel strain, Pseudomonas sp. B-1, isolated from membrane aerated biofilm reactor.

  2022cites this paper
• Contrasting effects of biochar- and organic fertilizer-amendment on community compositions of nitrifiers and denitrifiers in a wheat-maize rotation system

  2022cites this paper
• Agricultural practices of perennial energy crops affect nitrogen cycling microbial communities

  2022cites this paper
• Effect of aeration on nitrogen removal-associated microbial community in an innovative vertical cork-based constructed wetland for winery wastewater treatment

  2022cites this paper
• Unimodal response of N2O flux to changing rainfall amount and frequency in a wet meadow in the Tibetan Plateau

  2022cites this paper
• Nitrogen cycling activities during decreased stratification in the coastal oxygen minimum zone off Namibia

  2022cites this paper
• Tool and techniques study to plant microbiome current understanding and future needs: an overview

  2022cites this paper
• Effect of hydraulic retention time on microbial community structure and nitrogen metabolism in anaerobic-anoxic-oxic process

  2022cites this paper
• Nitrite oxidation in oxygen-deficient conditions during landfill leachate treatment.

  2022cites this paper
• Zinc application promotes nitrogen transformation in rice rhizosphere soil by modifying microbial communities and gene expression levels.

  2022cites this paper
• Potential contributions of nitrifiers and denitrifiers to nitrous oxide sources and sinks in China's estuarine and coastal areas

  2022cites this paper
• Denitrification capacity and denitrifying bacteria in a restored bottomland hardwood forest, Mississippi River Alluvial Valley: hydrological impacts

  2022cites this paper
• BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes

  2022cites this paper
• Diverse key nitrogen cycling genes nifH, nirS and nosZ associated with Pichavaram mangrove rhizospheres as revealed by culture-dependent and culture-independent analyses

  2022cites this paper
• Effect Of Feeding Gas Type and Nitrogen: Sulfur ratio On A Novel Sulfide-driven Denitrification Methane Oxidation (SDMO) System

  2022cites this paper
• Relative contributions of different substrates to soil N2O emission and their responses to N addition in a temperate forest.

  2021cites this paper
• Characterization of a novel marine aerobic denitrifier Vibrio spp. AD2 for efficient nitrate reduction without nitrite accumulation

  2021cites this paper
• Looking for lipases and lipolytic organisms in low-temperature anaerobic reactors treating domestic wastewater

  2021cites this paper
• Effect of intermittent induced aeration on nitrogen removal and denitrifying-bacterial community structure in Cork and gravel vertical flow pilot-scale treatment wetlands

  2021cites this paper
• Effects of biochar application on soil nitrogen transformation and N 2 O emissions: a review

  2021cites this paper
• Culture-independent assessment of the diazotrophic Bradyrhizobium communities in the Pampa and Atlantic Forest Biomes localities in southern Brazil.

  2021cites this paper
• Response of denitrification rate and denitrifiers to human-disturbance intensity and physicochemical factors of overlying water in a subtropical stream, China

  2021cites this paper
• Assembly of root-associated bacterial community in cadmium contaminated soil following five-year consecutive application of soil amendments: Evidences for improved soil health.

  2021cites this paper
• Changes in bacterial community and abundance of functional genes in paddy soil with cry1Ab transgenic rice

  2021cites this paper
• N Fertilization Dependent Bacterial and Archaeal Changes in Paddy Soil

  2021cites this paper
• The Nitrogen-Cycling Network of Bacterial Symbionts in the Sponge Spheciospongia vesparium

  2021cites this paper
• Dissimilatory nitrate reduction and functional genes in two subtropical rivers, China

  2021cites this paper
• Synthetic Biology and the Possibilities in Achieving a Plant Demand and Soil Buffer Capacity Adapted Nitrogen (N) Recycling

  2021cites this paper
• Reconciling trait-based perspectives along a trait integration continuum.

  2021cites this paper
• Spatial variation of denitrification and key controlling factors in streams and ponds sediments from a critical zone (southwestern France)

  2021cites this paper
• Nitrogen and Sulfur Additions Improved the Diversity of nirK- and nirS-Type Denitrifying Bacterial Communities of Farmland Soil

  2021cites this paper