A likelihood framework for estimating phylogeographic history on a continuous landscape.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Systematic Biology

• Publication date

  2008-08-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1080/10635150802304761PMID 18686193
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A new North American chorus frog species (Amphibia: Hylidae: Pseudacris) from the south-central United States

  2008cited by this paper
• On the falsifiability of the nested clade phylogeographic analysis method

  2008cited by this paper
• Bayesian spatial modeling of genetic population structure

  2008cited by this paper
• Coupling genetic and ecological-niche models to examine how past population distributions contribute to divergence.

  2007influential reference
• BMC Evolutionary Biology BioMed Central

  2007cited by this paper
• High-resolution species trees without concatenation

  2007cited by this paper
• The coup de grâce for the nested clade phylogeographic analysis?

  2007cited by this paper
• Analytical, computational, and statistical approaches to studying speciation

  2007cited by this paper
• Comparative phylogeography and speciation of dung beetles from the Australian Wet Tropics rainforest

  2007cited by this paper
• msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation

  2007cited by this paper
• The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics.

  2007cited by this paper
• Distinguishing terminal monophyletic groups from reticulate taxa: performance of phenetic, tree-based, and network procedures.

  2007cited by this paper
• Putting the ‘landscape’ in landscape genetics

  2007cited by this paper
• THE AUTOMATION AND EVALUATION OF NESTED CLADE PHYLOGEOGRAPHIC ANALYSIS

  2007influential reference
• Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses

  2007influential reference
• INTEGRATING COALESCENT AND ECOLOGICAL NICHE MODELING IN COMPARATIVE PHYLOGEOGRAPHY

  2007influential reference
• Phylogeny-based delimitation of species boundaries and contact zones in the trilling chorus frogs (Pseudacris).

  2007cited by this paper
• GEOLOGICAL AND CLIMATIC FORCES DRIVING SPECIATION IN THE CONTINENTALLY DISTRIBUTED TRILLING CHORUS FROGS (PSEUDACRIS)

  2007cited by this paper
• TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD

  2006cited by this paper
• LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters

  2006cited by this paper
• TEST FOR SIMULTANEOUS DIVERGENCE USING APPROXIMATE BAYESIAN COMPUTATION

  2006cited by this paper
• Invasion and the evolution of speed in toads

  2006cited by this paper
• A tale of two flatties: different responses of two terrestrial flatworms to past environmental climatic fluctuations at Tallaganda in montane southeastern Australia

  2006cited by this paper
• A brief guide to Landscape Genetics

  2006cited by this paper
• Coalescent‐based hypothesis testing supports multiple Pleistocene refugia in the Pacific Northwest for the Pacific giant salamander (Dicamptodon tenebrosus)

  2006cited by this paper
• A MULTILOCUS PERSPECTIVE ON REFUGIAL ISOLATION AND DIVERGENCE IN RAINFOREST SKINKS (CARLIA)

  2006cited by this paper
• Climate change and the origin of migratory pathways in the Swainson's thrush, Catharus ustulatus

  2006cited by this paper
• Relaxed Phylogenetics and Dating with Confidence

  2006cited by this paper
• Nested clade analysis statistics

  2006cited by this paper
• A Spatial Statistical Model for Landscape Genetics

  2005cited by this paper
• Landscape genetics of the blotched tiger salamander (Ambystoma tigrinum melanostictum)

  2005cited by this paper
• The effect of the Neolithic expansion on European molecular diversity

  2005cited by this paper
• Comparative phylogeographic summary statistics for testing simultaneous vicariance

  2005cited by this paper
• Recovering the geographic origin of early modern humans by realistic and spatially explicit simulations.

  2005cited by this paper
• Statistical phylogeography: methods of evaluating and minimizing inference errors

  2004influential reference
• The importance of proper model assumption in bayesian phylogenetics.

  2004cited by this paper
• LATE‐QUATERNARY VEGETATION DYNAMICS IN NORTH AMERICA: SCALING FROM TAXA TO BIOMES

  2004cited by this paper
• Accounting for coalescent stochasticity in testing phylogeographical hypotheses: modelling Pleistocene population structure in the Idaho giant salamander Dicamptodon aterrimus

  2004cited by this paper
• Seeing ghosts: the effect of unsampled populations on migration rates estimated for sampled populations

  2004cited by this paper
• Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis

  2004cited by this paper
• splatche: a program to simulate genetic diversity taking into account environmental heterogeneity

  2004cited by this paper
• C and C

  2004cited by this paper
• The burgeoning field of statistical phylogeography

  2003cited by this paper
• Landscape genetics: combining landscape ecology and population genetics

  2003cited by this paper
• R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock

  2003cited by this paper
• Statistical Phylogeography

  2002cited by this paper
• Divergence Time and Evolutionary Rate Estimation with Multilocus Data

  2002cited by this paper
• Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach.

  2002influential reference
• Divergence time and evolutionary rate estimation with multilocus data.

  2002cited by this paper
• The coalescent in a continuous, finite, linear population.

  2002cited by this paper
• Optimal randomization strategies when testing the existence of a phylogeographic structure.

  2002cited by this paper
• Distinguishing migration from isolation: a Markov chain Monte Carlo approach.

  2001influential reference
• Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods.

  2001cited by this paper
• Topics in Circular Statistics

  2001cited by this paper
• Performance of a divergence time estimation method under a probabilistic model of rate evolution.

  2001cited by this paper
• Performance of A 3 MCNP™ for Calculation of 3-D Neutron Flux Distribution in a BWR Core Shroud

  2001cited by this paper
• Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

  2001influential reference
• GENES MEET GEOLOGY: FISH PHYLOGEOGRAPHIC PATTERN REFLECTS ANCIENT, RATHER THAN MODERN, DRAINAGE CONNECTIONS

  2001cited by this paper
• Late Quaternary biomes of Canada and the eastern United States

  2000cited by this paper
• THE EFFECTS OF SUBDIVISION ON THE GENETIC DIVERGENCE OF POPULATIONS AND SPECIES

  2000cited by this paper
• From Gene Trees to Species Trees

  2000cited by this paper
• Mitochondrial genome variation and the origin of modern humans

  2000cited by this paper
• Likelihood-based tests of topologies in phylogenetics.

  2000cited by this paper
• The Maximum Likelihood Approach to Reconstructing Ancestral Character States of Discrete Characters on Phylogenies

  1999cited by this paper
• Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach.

  1999cited by this paper
• Maximum likelihood estimation of population growth rates based on the coalescent.

  1998influential reference
• Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history

  1998cited by this paper
• Estimating the rate of evolution of the rate of molecular evolution.

  1998cited by this paper
• Evolution of a Species' Range

  1997cited by this paper
• A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

  1997influential reference
• GENETIC MODELS OF ADAPTATION AND GENE FLOW IN PERIPHERAL POPULATIONS

  1997cited by this paper
• LIKELIHOOD OF ANCESTOR STATES IN ADAPTIVE RADIATION

  1997influential reference
• Historical Development of the Newton-Raphson Method

  1995influential reference
• Genealogies and geography.

  1995cited by this paper
• SUCCESS OF PHYLOGENETIC METHODS IN THE FOUR-TAXON CASE

  1993cited by this paper
• ESTIMATION OF SINGLE GENERATION MIGRATION DISTANCES FROM GEOGRAPHIC VARIATION IN ANIMAL MITOCHONDRIAL DNA

  1991influential reference
• Clinical significance of tamoxifen withdrawal response.

  1987cited by this paper
• Mitochondrial DNA and human evolution

  1987cited by this paper
• ADULT RECRUITMENT IN CHORUS FROGS: EFFECTS OF SIZE AND DATE AT METAMORPHOSIS'

  1987cited by this paper
• Demography and Life History of Two Species of Chorus Frogs (Anura: Hylidae) in South Carolina

  1987cited by this paper
• Phylogenies and the Comparative Method

  1985influential reference
• Analysis of Hybrid Zones

  1985cited by this paper
• Virtues of the Haversine

  1984cited by this paper
• A Field Guide to Reptiles and Amphibians of Eastern Central North America

  1976cited by this paper
• Home Range of the Western Chorus Frog Pseudacris triseriata triseriata

  1974influential reference
• Movements of Western Chorus Frogs Pseudacris triseriata triseriata Tagged with Co 60

  1973cited by this paper
• Distinguishing homologous from analogous proteins.

  1970cited by this paper
• Evolutionary Divergence and Convergence in Proteins

  1965cited by this paper
• A study of the life history of Pseudacris brachyphona (Cope) in West Virginia, with special reference to behavior and growth of marked individuals /

  1952cited by this paper
• Isolation by Distance.

  1943influential reference

• SBEARS - A site-based method to estimate ancestral ranges of species.

  2025cites this paper
• The promise and challenge of spatial inference with the full ancestral recombination graph under Brownian motion

  2025cites this paper
• The promise and challenge of spatial inference with the full ancestral recombination graph under Brownian motion

  2025cites this paper
• Maximum likelihood phylogeographic inference of cell motility and cell division from spatial lineage tracing data

  2024influential citation
• The population genetics of speciation by cascade reinforcement

  2023cites this paper
• Phylogenetic Biogeography Inference Using Dynamic Paleogeography Models and Explicit Geographic Ranges

  2023cites this paper
• Integrating Different Data Sources Using a Bayesian Hierarchical Model to Unveil Glacial Refugia

  2023cites this paper
• On the connections between the spatial Lambda-Fleming-Viot model and other processes for analysing geo-referenced genetic data.

  2023cites this paper
• Biogeography and the evolution of acoustic communication in the polyploid North American gray treefrog complex

  2023influential citation
• Paleogene forest fragmentation and out‐of‐Africa dispersal explain radiation of the Paleotropical dung beetle tribe Epactoidini trib. nov. (Coleoptera: Scarabaeinae)

  2022cites this paper
• A New Method for Integrating Ecological Niche Modeling with Phylogenetics to Estimate Ancestral Distributions.

  2021cites this paper
• Integrative and Comparative Biology

  2021cites this paper
• Neurogenomic divergence during speciation by reinforcement of mating behaviors in chorus frogs (Pseudacris)

  2021cites this paper
• Modelling the tempo and mode of lineage dispersal.

  2021cites this paper
• Life history traits and reproductive ecology of North American chorus frogs of the genus Pseudacris (Hylidae)

  2021cites this paper
• Signatures of north-eastern expansion and multiple refugia: genomic phylogeography of the Pine Barrens tree frog, Hyla andersonii (Anura: Hylidae)

  2021cites this paper
• Using ddRAD-seq phylogeography to test for genetic effects of headwater river capture in suckermouth armored catfish (Loricariidae: Hypostomus) from the central Brazilian Shield

  2021influential citation
• Biogeographic origins of southern African Silene (Caryophyllaceae).

  2021cites this paper
• Impact des changements climatiques sur la répartition et la diversité génétique des serpents Iraniens, implications pour la conservation

  2020cites this paper
• Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk

  2020influential citation
• Deep Diversification and Long-Term Persistence in The South American â•ŸDry Diagonaâ•Ž: Integrating Continent-Wide Phylogeography And Distribution Modeling of Geckos

  2020cites this paper
• Biogeographic Dating of Phylogenetic Divergence Times Using Priors and Processes

  2020cites this paper
• Phylogeographic estimation and simulation of global diffusive dispersal.

  2020cites this paper
• Testing methods of linguistic homeland detection using synthetic data

  2020cites this paper
• Inferring the sources of postglacial range expansion in two large European land snails

  2020cites this paper
• Evolutionary history and postglacial colonization of an Asian pit viper (Gloydius halys caucasicus) into Transcaucasia revealed by phylogenetic and phylogeographic analyses

  2019cites this paper
• Hierarchical Hybrid Enrichment: Multitiered Genomic Data Collection Across Evolutionary Scales, With Application to Chorus Frogs (Pseudacris)

  2019cites this paper
• The Definition of Bioregions in Palaeontological Studies of Diversity and Biogeography Affects Interpretations: Palaeozoic Tetrapods as a Case Study

  2018cites this paper
• Climate Is Not All: Evidence From Phylogeography of Rhodiola fastigiata (Crassulaceae) and Comparison to Its Closest Relatives

  2018cites this paper
• Dinosaurs reveal the geographical signature of an evolutionary radiation

  2018cites this paper
• Early Arrival and Climatically-Linked Geographic Expansion of New World Monkeys from Tiny African Ancestors

  2018cites this paper
• Conceptual and empirical advances in Neotropical biodiversity research

  2018cites this paper
• Physiological constraint on acrobatic courtship behavior underlies rapid sympatric speciation in bearded manakins

  2018cites this paper
• Dispersal predicts hybrid zone widths across animal diversity: Implications for species borders under incomplete reproductive isolation

  2018cites this paper
• Geographic variation in hybridization across a reinforcement contact zone of chorus frogs (Pseudacris)

  2017influential citation
• Global phylogeography of the insect pest Callosobruchus maculatus (Coleoptera: Bruchinae) relates to the history of its main host, Vigna unguiculata

  2017cites this paper
• Biogeography of Mycorrhizal Symbiosis

  2017cites this paper
• Secondary contact after divergence in allopatry explains current lack of ecogeographical isolation in two hybridizing alpine plant species

  2017cites this paper
• Evolutionary history of New World monkeys revealed by molecular and fossil data

  2017cites this paper
• An event model for phylogenetic biogeography using explicitly geographical ranges

  2017cites this paper
• Overview of Phylogenetic Approaches to Mycorrhizal Biogeography, Diversity and Evolution

  2017cites this paper
• Evaluating hypotheses of expansion from refugia through comparative phylogeography of south‐eastern Coastal Plain amphibians

  2017influential citation
• Explorer Toward a quantitative understanding of viral phylogeography

  2017cites this paper
• Explaining the geographic spread of emerging epidemics: a framework for comparing viral phylogenies and environmental landscape data

  2016cites this paper
• Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)

  2016cites this paper
• SERAPHIM: studying environmental rasters and phylogenetically informed movements

  2016cites this paper
• Emerging Concepts of Data Integration in Pathogen Phylodynamics

  2016cites this paper
• Ancestral Reconstruction

  2016cites this paper
• Phylogenetic relationships among species of the Neotropical genus Graomys (Rodentia: Cricetidae): contrasting patterns of skull morphometric variation and genetic divergence

  2016cites this paper
• Quantifying the spatiotemporal dynamics in a chorus frog (Pseudacris) hybrid zone over 30 years

  2016cites this paper
• Historical Biogeography of the Marine Snail Littorina saxatilis Inferred from Haplotype and Shell Morphology Evolution in NW Spain

  2016cites this paper
• Delimitação de espécies e história de diversificação do complexo Pagamea Guianensis (Rubiaceae) na América do Sul Tropical

  2016cites this paper
• Phylogeny and diversification of mountain vipers (Montivipera, Nilson et al., 2001) triggered by multiple Plio-Pleistocene refugia and high-mountain topography in the Near and Middle East.

  2016cites this paper
• Integrating phylogenomic and morphological data to assess candidate species‐delimitation models in brown and red‐bellied snakes (Storeria)

  2016cites this paper
• Historical Biogeography Using Species Geographical Ranges.

  2015influential citation
• Virus evolution and transmission in an ever more connected world

  2015cites this paper
• High speciation rate at temperate latitudes explains unusual diversity gradients in a clade of ectomycorrhizal fungi

  2015cites this paper
• Phylogeography of the arid-adapted Malagasy bullfrog, Laliostoma labrosum, influenced by past connectivity and habitat stability.

  2015cites this paper
• Scaling macro- and microevolutionary dynamics in the Caesar's mushrooms (Amanita sect. Caesareae)

  2015cites this paper
• The dissection of a Pleistocene refugium: phylogeography of the smooth newt, Lissotriton vulgaris, in the Balkans

  2015cites this paper
• Species tree phylogeny and biogeography of the Neotropical genus Pradosia (Sapotaceae, Chrysophylloideae).

  2015cites this paper
• Biogeographic dating of speciation times using

  2015cites this paper
• Biogeographic dating of speciation times using paleogeographically informed processes

  2015cites this paper
• Phylogeography of the commensal Rattus exulans with implications for its use as bioproxy for human migrations

  2015cites this paper
• Evolution and diversification related to rainfall regimes: diversification patterns in the South African genus Metalasia (Asteraceae–Gnaphalieae)

  2015cites this paper
• Phylogenetic niche conservatism and the evolutionary basis of ecological speciation

  2015cites this paper
• Conceptualizing a Novel Quasi-Continuous Bayesian Phylogeographic Framework for Spatiotemporal Hypothesis Testing

  2015cites this paper
• Diversification and biodiversity dynamics of hot and cold spots

  2015cites this paper
• Climate refugia: joint inference from fossil records, species distribution models and phylogeography.

  2014cites this paper
• A stable niche assumption-free test of ecological divergence.

  2014cites this paper
• On the biogeography of Centipeda: a species-tree diffusion approach.

  2014cites this paper
• DETERMINISM IN THE DIVERSIFICATION OF HISPANIOLAN TRUNK‐GROUND ANOLES (ANOLIS CYBOTES SPECIES COMPLEX)

  2013cites this paper
• Bayesian analysis of biogeography when the number of areas is large.

  2013cites this paper
• Evolution of the Ainu Language in Space and Time

  2013cites this paper
• Environmental Complexity and Biodiversity: The Multi-Layered Evolutionary History of a Log-Dwelling Velvet Worm in Montane Temperate Australia

  2013cites this paper
• Quaternary range and demographic expansion of Liolaemus darwinii (Squamata: Liolaemidae) in the Monte Desert of Central Argentina using Bayesian phylogeography and ecological niche modelling

  2013cites this paper
• Northern origin and diversification in the central lowlands? – Complex phylogeography and taxonomy of widespread day geckos (Phelsuma) from Madagascar

  2013influential citation
• Phylogeography of the widespread African puff adder (Bitis arietans) reveals multiple Pleistocene refugia in southern Africa

  2013cites this paper
• Diversification in a biodiversity hot spot: landscape correlates of phylogeographic patterns in the African spotted reed frog

  2013influential citation
• A likelihood framework analysis of an island radiation: phylogeography of the Lesser Antillean gecko Sphaerodactylus vincenti, in comparison with the anole Anolis roquet

  2013influential citation
• Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks.

  2013cites this paper
• TOWARDS AN INTEGRATED HISTORICAL BIOGEOGRAPHY OF THE NEOTROPICAL LOWLAND AVIFAUNA: COMBINING DIVER-SIFICATION ANALYSIS AND LANDSCAPE EVOLUTION

  2012cites this paper
• Explosive Pleistocene range expansion leads to widespread Amazonian sympatry between robust and gracile capuchin monkeys

  2012influential citation
• Extensive range persistence in peripheral and interior refugia characterizes Pleistocene range dynamics in a widespread Alpine plant species (Senecio carniolicus, Asteraceae)

  2012cites this paper
• DEEP DIVERSIFICATION AND LONG‐TERM PERSISTENCE IN THE SOUTH AMERICAN ‘DRY DIAGONAL’: INTEGRATING CONTINENT‐WIDE PHYLOGEOGRAPHY AND DISTRIBUTION MODELING OF GECKOS

  2012cites this paper
• Millipede Taxonomy after 250 Years: Classification and Taxonomic Practices in a Mega-Diverse yet Understudied Arthropod Group

  2012influential citation
• High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography.

  2012cites this paper
• Population genetics of Pseudacris feriarum

  2012cites this paper
• Deep divergences and extensive phylogeographic structure in a clade of lowland tropical salamanders

  2012influential citation
• Identification and characterization of nuclear microsatellite loci for multiple species of chorus frogs (Pseudacris) for population genetic analyses

  2011cites this paper
• A primer in Phylogenetic Biogeography using the Spatial Analysis of Vicariance

  2011cites this paper
• Analysing intraspecific genetic variation: A practical guide using mitochondrial DNA and microsatellites

  2011cites this paper
• Phylogenetic Methods in Biogeography

  2011cites this paper
• Phylogenetic structure and species boundaries in the mountain pitviper Ovophis monticola (Serpentes: Viperidae: Crotalinae) in Asia.

  2011influential citation
• DIM SUM: demography and individual migration simulated using a Markov chain

  2011influential citation
• Toward a quantitative understanding of viral phylogeography.

  2011cites this paper
• Integrating statistical genetic and geospatial methods brings new power to phylogeography.

  2011cites this paper
• Spatial analysis of vicariance: a method for using direct geographical information in historical biogeography

  2011cites this paper
• Toward a quantitative understan ding of viral phylogeography

  2011cites this paper
• Species Delimitation and Phylogeography of Aphonopelma hentzi (Araneae, Mygalomorphae, Theraphosidae): Cryptic Diversity in North American Tarantulas

  2011influential citation