Geologically ancient DNA: fact or artefact?

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Trends in Microbiology

• Publication date

  2005-05-01

• Fields of study

  Biology, Medicine, Geology

• Identifiers
  DOI 10.1016/J.TIM.2005.03.010PMID 15866038
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2000influential reference
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  1998cited by this paper
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  1996cited by this paper
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  1995cited by this paper
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  1994cited by this paper
• Preservation records of micro-organisms: evidence of the tenacity of life.

  1994cited by this paper
• DNA sequence from Cretaceous period bone fragments.

  1994cited by this paper
• DNA from an extinct plant

  1993cited by this paper
• Instability and decay of the primary structure of DNA

  1993cited by this paper
• Amplification and sequencing of DNA from a 120–135-million-year-old weevil

  1993cited by this paper
• PCR jumping in clones of 30-million-year-old DNA fragments from amber preserved termites (Mastotermes electrodominicus)

  1993cited by this paper
• Simple methods for testing the molecular evolutionary clock hypothesis.

  1993cited by this paper
• Isolation and partial characterisation of DNA from the bee Proplebeia dominicana (Apidae : Hymenoptera) in 25-40 million year old amber

  1992cited by this paper
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  1992cited by this paper
• An rbcL sequence from a Miocene Taxodium (bald cypress).

  1992cited by this paper
• DNA sequences from a fossil termite in Oligo-Miocene amber and their phylogenetic implications.

  1992influential reference
• The causes of molecular evolution

  1991cited by this paper
• Miocene DNA sequences - a dream come true?

  1991cited by this paper
• Bacterial DNA in Clarkia fossils.

  1991cited by this paper
• Chloroplast DNA sequence from a Miocene Magnolia species

  1990cited by this paper
• Avoiding false positives with PCR

  1989cited by this paper
• THE U. S. MARINE HOSPITAL SERVICE.

  1903cited by this paper

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