Phylogenetic analysis of AAA proteins.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Journal of Structural Biology

• Publication date

  2004-04-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/J.JSB.2003.11.020PMID 15037233
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains

  2003cited by this paper
• Molecular evolution of proteasomes.

  2002cited by this paper
• Ancient phylogenetic relationships.

  2002cited by this paper
• Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes.

  2002cited by this paper
• AAA proteins.

  2002cited by this paper
• BioLayout-an automatic graph layout algorithm for similarity visualization

  2001cited by this paper
• An AAA family tree.

  2001cited by this paper
• Enhanced genome annotation using structural profiles in the program 3D-PSSM.

  2000cited by this paper
• Microtubule disassembly by ATP-dependent oligomerization of the AAA enzyme katanin.

  1999cited by this paper
• The solution structure of VAT-N reveals a 'missing link' in the evolution of complex enzymes from a simple betaalphabetabeta element.

  1999cited by this paper
• The Janus Face of the Archaeal Cdc48/p97 Homologue VAT: Protein Folding versus Unfolding

  1999cited by this paper
• Characterization of ARC, a divergent member of the AAA ATPase family from Rhodococcus erythropolis.

  1998cited by this paper
• SMART, a simple modular architecture research tool: identification of signaling domains.

  1998cited by this paper
• Sequence analysis of the AAA protein family

  1997cited by this paper
• The Evolution of the Conserved ATPase Domain (CAD): Reconstructing the History of an Ancient Protein Module

  1997cited by this paper
• Self-compartmentalizing proteases.

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• Internal targeting signal of the BCS1 protein: a novel mechanism of import into mitochondria.

  1996cited by this paper
• Model of amino acid substitution in proteins encoded by mitochondrial DNA

  1996cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• The Escherichia coli FtsH protein is a prokaryotic member of a protein family of putative ATPases involved in membrane functions, cell cycle control, and gene expression

  1993cited by this paper
• BCS1, a novel gene required for the expression of functional Rieske iron‐sulfur protein in Saccharomyces cerevisiae.

  1992cited by this paper
• The rapid generation of mutation data matrices from protein sequences

  1992cited by this paper
• PAS1, a yeast gene required for peroxisome biogenesis, encodes a member of a novel family of putative ATPases.

  1991cited by this paper
• Graph drawing by force‐directed placement

  1991cited by this paper

• Molecular mechanisms of mitochondrial AAA+ proteases.

  2026cites this paper
• Molecular Insights Into the Differential Binding Affinity of Human Katanin Hexamer for C-Terminal Tails of β-Tubulin Isotypes.

  2025cites this paper
• Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein

  2025cites this paper
• Mutations in mitochondrial ATAD3 gene and disease, lessons from in vivo models

  2024cites this paper
• TRIP13 - a potential drug target in cancer pharmacotherapy.

  2024cites this paper
• Evolution of sequence, structural and functional diversity of the ubiquitous DNA/RNA-binding Alba domain

  2024cites this paper
• Advancements in unravelling the fundamental function of the ATAD3 protein in multicellular organisms.

  2024cites this paper
• Twin Embryos in Arabidopsis thaliana KATANIN 1 Mutants

  2024cites this paper
• Conformations of Bcs1L undergoing ATP hydrolysis suggest a concerted translocation mechanism for folded iron-sulfur protein substrate

  2024cites this paper
• Sequence, Structural and Functional Diversity of the Ubiquitous DNA/RNA-Binding Alba Domain

  2024cites this paper
• ATP Hydrolases Superfamily Protein 1 (ASP1) Maintains Root Stem Cell Niche Identity through Regulating Reactive Oxygen Species Signaling in Arabidopsis

  2024cites this paper
• New groups of highly divergent proteins in families as old as cellular life with important biological functions in the ocean

  2024cites this paper
• Knockdown of hCINAP sensitizes colorectal cancer cells to ionizing radiation

  2024cites this paper
• Spastin is an essential regulator of male meiosis, acrosome formation, manchette structure and nuclear integrity.

  2023cites this paper
• CRMP5 participates in oocyte meiosis by regulating spastin to correct microtubule-kinetochore misconnection.

  2023cites this paper
• "ATAD3C regulates ATAD3A assembly and function in the mitochondrial membrane".

  2023cites this paper
• Neuron navigators: A novel frontier with physiological and pathological implications.

  2023cites this paper
• Only One of Three Bcs1 Homologs in Aspergillus fumigatus Confers Respiratory Growth

  2023cites this paper
• Spastin is an essential regulator of male meiosis, acrosome formation, manchette structure and nuclear integrity

  2022cites this paper
• Deletion of ATAD3A inhibits osteogenesis by impairing mitochondria structure and function in pre‐osteoblast

  2022cites this paper
• Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone

  2022cites this paper
• Crystal structure and biochemical analysis suggest that YjoB ATPase is a substrate-specific molecular chaperone

  2022cites this paper
• Isolation and Characterization of the First Temperate Virus Infecting Psychrobacillus from Marine Sediments

  2022cites this paper
• Extreme parsimony in ATP consumption by 20S complexes in the global disassembly of single SNARE complexes

  2021cites this paper
• Regulation | AAA-ATPases

  2021cites this paper
• Simulating the directional translocation of a substrate by the AAA+ motor in the 26S proteasome

  2021cites this paper
• Molecular cloning and in silico analysis of heat stress responsive gene ClpB1 from Ziziphus nummularia genotypes

  2021cites this paper
• A conserved Guided Entry of Tail-anchored pathway is involved in the trafficking of tail-anchored membrane proteins in Plasmodium falciparum

  2021cites this paper
• Metatranscriptomic Analysis of Bacterial Communities on Laundered Textiles: A Pilot Case Study

  2021cites this paper
• Spastin interacts with CRMP5 to promote spindle organization in mouse oocytes by severing microtubules.

  2021cites this paper
• Conserved structural elements specialize ATAD1 as a membrane protein extraction machine

  2021influential citation
• KATNB1 is a master regulator of multiple katanin enzymes in male meiosis and haploid germ cell development.

  2021cites this paper
• Cutting, Amplifying, and Aligning Microtubules with Severing Enzymes

  2020cites this paper
• Structure of the Bcs1 AAA-ATPase suggests an airlock-like translocation mechanism for folded proteins

  2020cites this paper
• Quality control pathways of tail-anchored proteins.

  2020cites this paper
• Structure of the AAA protein Msp1 reveals mechanism of mislocalized membrane protein extraction

  2020cites this paper
• Identi�cation of Mitochondrial-related Prognostic Biomarkers Associated with Metabolic Processes of Hepatocellular Carcinoma

  2020cites this paper
• Structures of AAA protein translocase Bcs1 suggest translocation mechanism of a folded protein

  2020cites this paper
• Biochemically diverse CRISPR-Cas9 orthologs

  2020cites this paper
• Interactome analysis and docking site prediction of DNA X-ray repair cross-complementing protein (XRCC) in Arabidopsis thaliana

  2020cites this paper
• Msp1/ATAD1 in Protein Quality Control and Regulation of Synaptic Activities.

  2020cites this paper
• Rearranging AAA+ architecture to accommodate folded substrates

  2020cites this paper
• Structural snapshots of the cellular folded protein translocation machinery Bcs1

  2020cites this paper
• Spastin Interacts with CRMP5 to Promote  Spindle Organization of Mouse Oocytes by  Severing Microtubules.

  2020cites this paper
• A CDK-regulated chromatin segregase promoting chromosome replication

  2020cites this paper
• Heritability of Horn Size in Thinhorn Sheep

  2019cites this paper
• Different Location of Katanin P60 Effect on Cellular Microtubule Cutting

  2019cites this paper
• The role of VPS4 in ESCRT-III polymer remodeling.

  2019cites this paper
• Molecular pathways of mitochondrial outer membrane protein degradation.

  2019cites this paper
• Elk1 affects katanin and spastin proteins via differential transcriptional and post-transcriptional regulations

  2019cites this paper
• Microtubule‑severing protein Katanin p60 ATPase‑containing subunit A‑like 1 is involved in pole‑based spindle organization during mouse oocyte meiosis.

  2019cites this paper
• ZGRF1 variants implicated in a sensory reflex epilepsy

  2019cites this paper
• Shaping the Nascent Ribosome: AAA-ATPases in Eukaryotic Ribosome Biogenesis

  2019cites this paper
• Recombinant ATPase of Virulent Aeromonas hydrophila Protects Channel Catfish Against Motile Aeromonas Septicemia

  2019cites this paper
• A proteomic investigation of Aspergillus carbonarius exposed to yeast volatilome or to its major component 2-phenylethanol reveals major shifts in fungal metabolism.

  2019cites this paper
• Differentially Expressed Mitochondrial Proteins in Human MCF7 Breast Cancer Cells Resistant to Paclitaxel

  2019cites this paper
• Prognostic value of ATAD3 gene cluster expression in hepatocellular carcinoma

  2019cites this paper
• DNA Uptake by Type IV Filaments

  2019cites this paper
• The molecular principles governing the activity and functional diversity of AAA+ proteins

  2019cites this paper
• Mitochondrial AAA‐ATPase Msp1 detects mislocalized tail‐anchored proteins through a dual‐recognition mechanism

  2019cites this paper
• Molecular Investigations into the Unfoldase Action of Severing Enzymes on Microtubules

  2019cites this paper
• Gene variants in ZGRF1 implicated for a rare sensory reflex epilepsy

  2019cites this paper
• Biogenesis of the bc1 Complex of the Mitochondrial Respiratory Chain.

  2018cites this paper
• TARGETED LOCALIZATION OF MICROTUBULE-SEVERING ENZYMES TO CREATE NEW LOCAL TOOLS TO STUDY CELL DIVISION

  2018influential citation
• Clinical spectrum of BCS1L Mitopathies and their underlying structural relationships

  2018cites this paper
• ATAD3 controls mitochondrial cristae structure in mouse muscle, influencing mtDNA replication and cholesterol levels

  2018influential citation
• Creation and testing of a new, local microtubule‐disruption tool based on the microtubule‐severing enzyme, katanin p60

  2018cites this paper
• Erratum to: Early emergence of the FtsH proteases involved in photosystem II repair

  2018cites this paper
• Early emergence of the FtsH proteases involved in photosystem II repair

  2018cites this paper
• The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis

  2017cites this paper
• Deviation of the typical AAA substrate-threading pore prevents fatal protein degradation in yeast Cdc48

  2017cites this paper
• Katanin-like 2 (KATNAL2) functions in multiple aspects of haploid male germ cell development in the mouse

  2017cites this paper
• The alternative evolutionary fates of mitochondrial proteins

  2017cites this paper
• Msp1 Is a Membrane Protein Dislocase for Tail-Anchored Proteins.

  2017influential citation
• Metalloproteases of the Inner Mitochondrial Membrane.

  2017cites this paper
• Assessing heterogeneity in oligomeric AAA+ machines

  2017cites this paper
• The Generation of Recombinant Zea mays Spastin and Katanin Proteins for In Vitro Analysis

  2017cites this paper
• Regulation of Katanin Activity on Microtubules

  2017cites this paper
• Multifunctional Mitochondrial AAA Proteases

  2017cites this paper
• Differential Regulation of Genes Coding for Organelle and Cytosolic ClpATPases under Biotic and Abiotic Stresses in Wheat

  2016cites this paper
• Fidgetin-like 1 is a ciliogenesis-inhibitory centrosome protein

  2016cites this paper
• Meiotic Clade AAA ATPases: Protein Polymer Disassembly Machines.

  2016cites this paper
• Assembly of the Escherichia coli NADH:ubiquinone oxidoreductase (respiratory complex I).

  2016cites this paper
• Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

  2016influential citation
• Asymmetric ring structure of Vps4 required for ESCRT-III disassembly

  2015cites this paper
• Correction: AAA-ATPase FIDGETIN-LIKE 1 and Helicase FANCM Antagonize Meiotic Crossovers by Distinct Mechanisms

  2015cites this paper
• Vps4 disassembles an ESCRT-III filament by global unfolding and processive translocation

  2015cites this paper
• Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties

  2015cites this paper
• Building the Neuronal Microtubule Cytoskeleton.

  2015cites this paper
• AAA-ATPase FIDGETIN-LIKE 1 and Helicase FANCM Antagonize Meiotic Crossovers by Distinct Mechanisms

  2015cites this paper
• Structure and evolution of N-domains in AAA metalloproteases.

  2015influential citation
• Biophysical Characterization of Katanin’s Regulation of Microtubules

  2015cites this paper
• Phylum-wide analysis of genes/proteins related to the last steps of assembly and export of extracellular polymeric substances (EPS) in cyanobacteria

  2015cites this paper
• Katanin Severing and Binding Microtubules Are Inhibited by Tubulin Carboxy Tails.

  2015cites this paper
• Sinorhizobium meliloti Flp Pili with Quorum Sensing in Symbiotically Important, Bundle-Forming ExpR Coordinates the Expression of

  2014cites this paper
• Association between an alternative promoter polymorphism and sperm deformity rate is due to modulation of the expression of KATNAL1 transcripts in Chinese Holstein bulls.

  2014cites this paper
• ExpR Coordinates the Expression of Symbiotically Important, Bundle-Forming Flp Pili with Quorum Sensing in Sinorhizobium meliloti

  2014cites this paper
• The role of neuron navigator 1 in vascular development

  2014cites this paper
• Analysis of P-Loop and its Flanking Region Subsequence of Diverse NTPases Reveals Evolutionary Selected Residues

  2014cites this paper
• The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana.

  2014cites this paper