Comprehensive comparison of six microarray technologies.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Nucleic Acids Research

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/NAR/GNH123PMID 15333675PMCID PMC516080
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

  2004cited by this paper
• A comparison of oligonucleotide and cDNA-based microarray systems.

  2004cited by this paper
• Microarrays: the use of oligonucleotides and cDNA for the analysis of gene expression.

  2003cited by this paper
• Development and characterization of a stable epithelial cell line from Muta™Mouse lung

  2003cited by this paper
• Evaluation of gene expression measurements from commercial microarray platforms.

  2003cited by this paper
• Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines.

  2003cited by this paper
• A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma

  2003cited by this paper
• Cross-platform comparison and visualisation of gene expression data using co-inertia analysis

  2003cited by this paper
• Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays

  2003cited by this paper
• Microarray results: how accurate are they?

  2002cited by this paper
• Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays.

  2002cited by this paper
• An assessment of Motorola CodeLink microarray performance for gene expression profiling applications.

  2002cited by this paper
• Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays.

  2002cited by this paper
• Analysis of matched mRNA measurements from two different microarray technologies

  2002cited by this paper
• Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

  2001cited by this paper
• Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

  2001cited by this paper
• Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays.

  2000cited by this paper
• High density synthetic oligonucleotide arrays

  1999cited by this paper
• Applied Multivariate Statistical Analysis

  1983cited by this paper

• Comparative and integrative analysis of transcriptomic and epigenomic-wide DNA methylation changes in African American prostate cancer

  2023cites this paper
• Characterization of the gene signature correlated with favorable response to chemoradiotherapy in rectal cancer: A hypothesis‐generating study

  2023cites this paper
• Designing viral diagnostics with model-based optimization

  2021cites this paper
• Identification of Co-Deregulated Genes in Urinary Bladder Cancer Using High-Throughput Methodologies

  2021cites this paper
• Efficient design of maximally active and specific nucleic acid diagnostics for thousands of viruses

  2020cites this paper
• PFRED: A computational platform for siRNA and antisense oligonucleotides design

  2020cites this paper
• CyclinD1 controls development of cerebellar granule cell progenitors through phosphorylation and stabilization of ATOH1

  2020cites this paper
• Silencing of oncogenic KRAS by mutant-selective small interfering RNA

  2020cites this paper
• Meta-Analysis of Human and Mouse Biliary Epithelial Cell Gene Profiles

  2019cites this paper
• The “Gene Cube”: A Novel Approach to Three-dimensional Clustering of Gene Expression Data

  2019cites this paper
• Microfluidic-Based Nucleic Acid Amplification Systems in Microbiology

  2019cites this paper
• Testosterone Influence on Gene Expression in Lacrimal Glands of Mouse Models of Sjögren Syndrome

  2019cites this paper
• Are BALB/c Mice Relevant Models for Understanding Sex-Related Differences in Gene Expression in the Human Meibomian Gland?

  2019cites this paper
• Microfluidic Array Chip for Parallel Detection of Waterborne Bacteria

  2019influential citation
• Integrated multiomic predictors for ovarian cancer survival

  2018cites this paper
• Do nerves make bowels irritable?

  2018cites this paper
• Influence of lipopolysaccharide on proinflammatory gene expression in human corneal, conjunctival and meibomian gland epithelial cells.

  2018cites this paper
• Descriptor : A merged lung cancer transcriptome dataset for clinical predictive modeling

  2018cites this paper
• Sex Effects on Gene Expression in Lacrimal Glands of Mouse Models of Sjögren Syndrome

  2018cites this paper
• Sex hormones and schizophrenia: from animal behavioural models to gene targets

  2018cites this paper
• A functional role for the epigenetic regulator ING1 in activity-induced gene expression in primary cortical neurons

  2017cites this paper
• Microarray-Based Gene Expression Analysis for Veterinary Pathologists: A Review

  2017cites this paper
• Biomechanisms of Comorbidity: Reviewing Integrative Analyses of Multi-omics Datasets and Electronic Health Records

  2016cites this paper
• Reciprocal regulation of actin cytoskeleton remodelling and cell migration by Ca2+ and Zn2+: role of TRPM2 channels

  2016cites this paper
• Equivalence of MammaPrint array types in clinical trials and diagnostics

  2016cites this paper
• Inter-laboratory study of human in vitro toxicogenomics-based tests as alternative methods for evaluating chemical carcinogenicity: a bioinformatics perspective

  2016cites this paper
• Molecular studies of abiotic stress and abscisic acid mediated stress response pathway in barley

  2015cites this paper
• articleCross-platform analysis of global microRNA expression technologies

  2015cites this paper
• Transcriptional profiling of two Atlantic salmon strains: implications for reintroduction into Lake Ontario

  2015cites this paper
• Infralimbic EphB2 Modulates Fear Extinction in Adolescent Rats

  2015cites this paper
• A common gene signature across multiple studies relate biomarkers and functional regulation in tolerance to renal allograft

  2015cites this paper
• Altered hepatic gene expression in nonalcoholic fatty liver disease is associated with lower hepatic n‐3 and n‐6 polyunsaturated fatty acids

  2015cites this paper
• Concordance between RNA-sequencing data and DNA microarray data in transcriptome analysis of proliferative and quiescent fibroblasts

  2015cites this paper
• Genes Related to Antiviral Activity, Cell Migration, and Lysis Are Differentially Expressed in CD4+ T Cells in Human T Cell Leukemia Virus Type 1-Associated Myelopathy/Tropical Spastic Paraparesis Patients

  2014cites this paper
• A systems biology analysis of the changes in gene expression via silencing of HPV-18 E1 expression in HeLa cells

  2014cites this paper
• Detecting, correcting, and preventing the batch effects in multi-site data, with a focus on gene expression Microarrays

  2014cites this paper
• Reconsideration of in silico siRNA design from a perspective of heterogeneous data integration: problems and solutions

  2014cites this paper
• with clinical outcome in patients with diffuse large B-cell lymphoma Members of the glutathione and ABC-transporter families are associated

  2013cites this paper
• Influence of aromatase absence on the gene expression and histology of the mouse meibomian gland.

  2013cites this paper
• Genes related to antiviral activity, cell migration, and lysis are differentially expressed in CD4+ T cells in HAM/TSP patients

  2013cites this paper
• STIM1 negatively regulates Ca²⁺ release from the sarcoplasmic reticulum in skeletal myotubes.

  2013cites this paper
• A Functional Genomics Approach for Characterizing the Role of Six Transcription Factors in Muscle Development

  2012cites this paper
• Challenges associated with clinical studies and the integration of gene expression data

  2012cites this paper
• The effects of methyl-donor deficiency on mutation induction and transgenerational instability in mice.

  2012cites this paper
• Comparability and reproducibility of biomedical data

  2012cites this paper
• Functional comparison of microarray data across multiple platforms using the method of percentage of overlapping functions.

  2012cites this paper
• Bioinformatics tools in predictive ecology: applications to fisheries

  2012cites this paper
• Loss of the starvation-induced gene Rack1 leads to glycogen deficiency and impaired autophagic responses in Drosophila

  2012cites this paper
• Hypertrophy in Skeletal Myotubes Induced by Junctophilin-2 Mutant, Y141H, Involves an Increase in Store-operated Ca2+ Entry via Orai1*

  2012cites this paper
• Next Generation Microarray Bioinformatics

  2012cites this paper
• Identification of Common Differentially Expressed Genes in Urinary Bladder Cancer

  2011cites this paper
• Hybridization Array Technologies

  2011cites this paper
• Gene expression signatures differ with extent of atherosclerosis in monkey iliac artery

  2011cites this paper
• Analyses of placental gene expression in pregnancy-related hypertensive disorders.

  2011cites this paper
• RNAi-induced off-target effects in Drosophila melanogaster: frequencies and solutions.

  2011cites this paper
• Transcriptomic response of murine liver to severe injury and hemorrhagic shock: a dual-platform microarray analysis.

  2011cites this paper
• Probabilistic analysis of the human transcriptome with side information

  2011cites this paper
• Crohn's disease: a biomarker approach in assessing disease state and the efficacy of dietary intervention

  2011cites this paper
• Oligonucleotide microarrays for identification of microbial pathogens and detection of their virulence-associated or drug-resistance determinants.

  2011cites this paper
• Real-time PCR-based microfluidic array chip for simultaneous detection of multiple waterborne pathogens

  2010cites this paper
• Exon-Level Microarray Analyses Identify Alternative Splicing Programs in Breast Cancer

  2010cites this paper
• An Introduction to Toxicogenomics

  2010cites this paper
• Cross-platform analysis of global microRNA expression technologies

  2010cites this paper
• Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions

  2010cites this paper
• Consistency of predictive signature genes and classifiers generated using different microarray platforms

  2010cites this paper
• Molecular signatures and new candidates to target the pathogenesis of rheumatoid arthritis.

  2010cites this paper
• Microarray probes and probe sets.

  2010cites this paper
• Toxicogenomics in Preclinical Development

  2010cites this paper
• Reciprocal Communication Between Endometrial Stromal Cells and Macrophages

  2010cites this paper
• The application of cDNA and tissue microarray methods in the study of human carcinomas

  2010cites this paper
• A Brassica Exon Array for Whole-Transcript Gene Expression Profiling

  2010cites this paper
• Combining heterogeneous sources of data for the reverse-engineering of gene regulatory networks

  2010cites this paper
• Two-Way Communication Between Endometrial Stromal Cells and Monocytes

  2010cites this paper
• Perspectives: Gene expression in fisheries management

  2010cites this paper
• Microarrays in Drug Discovery and Development

  2010cites this paper
• Tumorigenesis and Neoplastic Progression Analysis of Orthologous Gene Expression between Human Pulmonary Adenocarcinoma and a Carcinogen-Induced Murine Model

  2010cites this paper
• Identificação dos genes diferencialmente expressos na cirrose secundária à esteatohepatite não alcoólica

  2009cites this paper
• Review of gene-expression profiling and its clinical use in breast cancer.

  2009cites this paper
• Genome‐wide reduction in H3K9 acetylation during human embryonic stem cell differentiation

  2009cites this paper
• Ecotoxicogenomics: Emerging Technologies for Emerging Contaminants 1

  2009cites this paper
• The Cancer Degradome

  2009cites this paper
• Gene expression profiling in the aging ovary.

  2009cites this paper
• Global transcriptional characterization of a mouse pulmonary epithelial cell line for use in genetic toxicology.

  2009cites this paper
• Real-time PCR array chip with capillary-driven sample loading and reactor sealing for point-of-care applications

  2009cites this paper
• Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles

  2009cites this paper
• Kinetic Effects on Signal Normalization in Oligonucleotide Microchips with Labeled Immobilized Probes

  2009cites this paper
• The Genetic Basis of Evolved Differences in Gene Expression in Fundulus heteroclitus

  2009cites this paper
• Technical Analysis of cDNA Microarrays

  2009cites this paper
• Genome-based technologies useful for aquaculture research and genetic improvement of aquaculture species.

  2009cites this paper
• Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes

  2009cites this paper
• Methods for quantitation of gene expression.

  2009cites this paper
• Masseter muscle gene expression in relation to various craniofacial deformities : a genotype-phenotype study

  2009influential citation
• Effectiveness of an innovative prototype Subtracted Diversity Array (SDA) for fingerprinting commercial Chinese herbal medicines

  2009cites this paper
• LOX-1-MT1-MMP axis is crucial for RhoA and Rac1 activation induced by oxidized low-density lipoprotein in endothelial cells.

  2009cites this paper
• Integrating bioinformatics and physiology to describe genetic effects in complex polygenic diseases

  2009cites this paper
• Gene expression profiling reveals complex changes in the olfactory bulbectomy model of depression after chronic treatment with antidepressants.

  2008cites this paper
• Comparability of Microarray Experiments from the Instrument and the Sample Site and Approaches Towards Standardization

  2008cites this paper
• Assessment of repeated microarray experiments using mixed tissue RNA reference samples.

  2008cites this paper
• Computational Analysis and Interpretation of Prokaryotic High-throughput Expression Data

  2008cites this paper
• AsiDesigner: exon-based siRNA design server considering alternative splicing

  2008cites this paper