Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

No abstract is available for this paper.

• Publication year

  2013

• Venue

  The ISME Journal

• Publication date

  2013-11-28

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1038/ismej.2013.211PMID 24285359PMCID PMC3996690
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Bacterial Adaptation through Loss of Function

  2013cited by this paper
• Microbial syntrophy: interaction for the common good.

  2013influential reference
• Selection-Driven Gene Loss in Bacteria

  2012cited by this paper
• Dominates Interactions among Culturable Microbial Species

  2012cited by this paper
• The multiplicity of divergence mechanisms in a single evolving population

  2012cited by this paper
• Understanding microbial cooperation.

  2012cited by this paper
• Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations

  2012cited by this paper
• Design and Characterization of Auxotrophy-Based Amino Acid Biosensors

  2012influential reference
• Evolution of functional specialization and division of labor

  2012cited by this paper
• Cooperative Adaptation to Establishment of a Synthetic Bacterial Mutualism

  2011cited by this paper
• Microbial metabolic exchange--the chemotype-to-phenotype link.

  2011cited by this paper
• Ecological succession in long-term experimentally evolved biofilms produces synergistic communities

  2011cited by this paper
• Extreme genome reduction in symbiotic bacteria

  2011cited by this paper
• Conceptual Synthesis in Community Ecology

  2010cited by this paper
• Rapid evolution of stability and productivity at the origin of a microbial mutualism

  2010cited by this paper
• NOVEL COOPERATION EXPERIMENTALLY EVOLVED BETWEEN SPECIES

  2010cited by this paper
• CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks

  2010cited by this paper
• Emergent cooperation in microbial metabolism

  2010cited by this paper
• Methods for unveiling cryptic microbial partnerships in nature.

  2009cited by this paper
• Rules of engagement: interspecies interactions that regulate microbial communities.

  2008cited by this paper
• Physiology, Ecology, Phylogeny, and Genomics of Microorganisms Capable of Syntrophic Metabolism

  2008cited by this paper
• Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics

  2008cited by this paper
• Ultrastructural Characterization of the Prokaryotic Symbiosis in “Chlorochromatium aggregatum”

  2008cited by this paper
• Unraveling Microbial Interactions in Food Fermentations: from Classical to Genomics Approaches

  2008cited by this paper
• Evolution and persistence of obligate mutualists and exploiters: competition for partners and evolutionary immunization.

  2007cited by this paper
• The genome of Syntrophus aciditrophicus: Life at the thermodynamic limit of microbial growth

  2007cited by this paper
• E. coli genome manipulation by P1 transduction.

  2007cited by this paper
• Pathways to mutualism breakdown.

  2006cited by this paper
• Genome evolution in major Escherichia coli O157:H7 lineages

  2006cited by this paper
• Unexpected Diversity and Complexity of the Guerrero Negro Hypersaline Microbial Mat

  2006cited by this paper
• Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

  2006influential reference
• Coaggregation Facilitates Interspecies Hydrogen Transfer between Pelotomaculum thermopropionicum and Methanothermobacter thermautotrophicus

  2005cited by this paper
• Metabolomic diversity in the species Escherichia coli and its relationship to genetic population structure

  2005cited by this paper
• EXPERIMENTAL EVIDENCE FOR SYMPATRIC ECOLOGICAL DIVERSIFICATION DUE TO FREQUENCY‐DEPENDENT COMPETITION IN ESCHERICHIA COLI

  2004cited by this paper
• The Evolution of Cooperation

  2004cited by this paper
• COEXISTENCE OF MUTUALISTS AND EXPLOITERS ON SPATIAL LANDSCAPES

  2003cited by this paper
• Competitive coexistence in spatially structured environments: a synthesis

  2003cited by this paper
• In vitro demonstration of anaerobic oxidation of methane coupled to sulphate reduction in sediment from a marine gas hydrate area.

  2002cited by this paper
• A model for the evolutionary dynamics of cross-feeding polymorphisms in microorganisms

  2002cited by this paper
• Synergistic interactions in the microbial world

  2002cited by this paper
• Cheating and the evolutionary stability of mutualisms

  2002cited by this paper
• Evolving the division of labour: generalists, specialists and task allocation.

  2002cited by this paper
• Parasites of mutualisms

  2001cited by this paper
• Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut

  2001cited by this paper
• One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

  2000cited by this paper
• On the Adaptive Control of the False Discovery Rate in Multiple Testing With Independent Statistics

  2000cited by this paper
• Variation and evolution of the citric-acid cycle: a genomic perspective.

  1999influential reference
• The evolution of interspecific mutualisms.

  1998cited by this paper
• Microbial evolution in a simple unstructured environment: genetic differentiation in Escherichia coli.

  1994cited by this paper
• Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 Generations

  1991influential reference
• Distinguishing mechanisms for the evolution of co-operation.

  1991cited by this paper
• Transposon Mutagenesis of Azospirillum brasilense and Azospirillum lipoferum: Physical Analysis of Tn5 and Tn5-Mob Insertion Mutants

  1987cited by this paper
• The Biology of mutualism :: ecology and evolution

  1985cited by this paper
• The evolution of cooperation

  1981cited by this paper
• Interactions in a mixed bacterial population growing on methane in continuous culture

  1974cited by this paper

• Stress-Induced Cooperation Promotes Tolerance in Resource-Limited Auxotrophic Microbial Consortia

  2026cites this paper
• Microbial interactions in facilitating antibiotic activity and resistance evolution

  2026cites this paper
• Harnessing a synthetic microbial community with functional complementarity for improved maize growth and field performance

  2026cites this paper
• Generalized dynamics of cross-feeding bacteria.

  2026cites this paper
• Candidate Phyla Radiation (CPR) bacteria from hyperalkaline ecosystems provide novel insight into their symbiotic lifestyle and ecological implications

  2025cites this paper
• Cellular Economics of Exchanged Metabolites Alter Ratios of Microbial Trading Partners in a Predictable Manner.

  2025cites this paper
• Metabolic interplay drives population cycles in a cross-feeding microbial community

  2025cites this paper
• Accuracy of the Lotka-Volterra model fails in strongly coupled microbial consumer-resource systems

  2025cites this paper
• Advances in synthetic microbial ecosystems approach for studying ecological interactions and their influencing factors

  2025cites this paper
• An updated view of metabolic handoffs in microbiomes.

  2025cites this paper
• Microbial cross-feeding stabilized by segregation of a dependent mutant from its independent ancestor

  2025cites this paper
• Asymmetric metabolic adaptations undermine stability in microbial syntrophy

  2025cites this paper
• The role of vegetation restoration in shaping the structure and stability of soil bacterial community of alpine mining regions

  2025cites this paper
• Paradox of the Sub‐Plankton: Plausible Mechanisms and Open Problems Underlying Strain‐Level Diversity in Microbial Communities

  2025cites this paper
• Understanding the development of bacterial colony: Physiology, new technology, and modeling

  2025cites this paper
• Tyrosine availability shapes Staphylococcus aureus nasal colonization and interactions with commensal communities

  2025cites this paper
• Deciphering rapid proliferation of filamentous bacteria in activated sludge community via cross-feeding of public goods mediated by diffusible signal factor.

  2025cites this paper
• Metabolic reprogramming in PGPR reveals cross-feeding-driven physiological shifts and metabolic adaptations

  2025cites this paper
• Enhanced organic waste degradation through enzymatic synergy of Serratia and Stenotrophomonas

  2025cites this paper
• Adjustable microbial cross-feedings adapt to landforms in the Yangtze River

  2025cites this paper
• Low anabolic independence emerges when cultivating more than three bacterial species together

  2025cites this paper
• Impact of dietary polyphenols from shredded, steam-exploded pine on growth performance, organ indices, meat quality, and cecal microbiota of broiler chickens

  2025cites this paper
• Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage

  2025cites this paper
• Coupling behavior of natural organic matter and nitrate reduction in iron-rich riparian zones under varying hydraulic retention times

  2025cites this paper
• Strengthen or Weaken: Evolutionary Directions of Cross‐Feeding After Formation

  2025cites this paper
• Lactic acid bacteria mechanism of protein degradation in anaerobic co-fermentation of cabbage waste with wheat bran

  2025cites this paper
• Characteristics of microbial carbon pump in the sediment of kelp aquaculture zone and its contribution to recalcitrant dissolved organic carbon turnover: insights into metabolic patterns and ecological functions.

  2025cites this paper
• Unveiling the role of exogenous cobalamin on anammox performance: Nitrogen removal, sludge and microbial characterization

  2025cites this paper
• Unlocking the potential of defined co-cultures for industrial biotechnology: opportunities and challenges.

  2025cites this paper
• Microbial model communities exhibit widespread metabolic interdependencies

  2025cites this paper
• Floc-granule microbial symbiosis drives DNRA in anammox bacteria via cross-feeding for complete autotrophic nitrogen removal

  2025cites this paper
• Impaired denitrification of aerobic granules in response to micro/nanoplastic stress: Insights from interspecies interactions and electron transfer processes.

  2025cites this paper
• Coregulation strategies of the thiosulfate-based denitrifying consortium acclimating to low temperature

  2025cites this paper
• Insights into constructing a stable and efficient microbial consortium system

  2024cites this paper
• Characterizing a stable five-species microbial community for use in experimental evolution and ecology

  2024cites this paper
• Modeling Dynamics of Human Gut Microbiota Derived from Gluten Metabolism: Obtention, Maintenance and Characterization of Complex Microbial Communities

  2024cites this paper
• Unveiling intraspecific diversity and evolutionary dynamics of the foodborne pathogen Bacillus paranthracis through high-quality pan-genome analysis

  2024cites this paper
• Bacterial cross-feeding can promote gene retention by lowering gene expression costs

  2024cites this paper
• Photocatalysis Inhibits the Emergence of Multidrug-Resistant Bacteria in an Antibiotic-Resistant Bacterial Community in Aquatic Environments.

  2024cites this paper
• Investigating the degradation potential of microbial consortia for perfluorooctane sulfonate through a functional "top-down" screening approach

  2024cites this paper
• Nutrient limitation mediates soil microbial community structure and stability in forest restoration.

  2024cites this paper
• Vertical heterogeneity enhances network complexity and stability of co-occurrence microbes in the eastern Indian Ocean.

  2024cites this paper
• A Study of the Community Relationships Between Methanotrophs and Their Satellites Using Constraint-Based Modeling Approach

  2024cites this paper
• Metabolic interplay drives population cycles in a cross-feeding microbial community

  2024cites this paper
• A constraint-based framework to reconstruct interaction networks in microbial communities

  2024cites this paper
• Degradation effect of the special microbial community in starving sludge on high aniline concentrations revealed by high-throughput sequencing

  2024cites this paper
• In Staphylococcus aureus, the acyl‐CoA synthetase MbcS supports branched‐chain fatty acid synthesis from carboxylic acid and aldehyde precursors

  2024cites this paper
• Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

  2024cites this paper
• Artificial microbial consortium for simultaneous removal of dibutyl phthalate and atrazine combined pollutants at low temperatures

  2024cites this paper
• Dissecting mechanisms of fecal microbiota transplantation efficacy in disease.

  2024cites this paper
• Spatially structured microbial consortia and their role in food fermentations.

  2024cites this paper
• Pan-genome insights into adaptive evolution of bacterial symbionts in mixed host-microbe symbioses represented by human gut microbiota Bacteroides cellulosilyticus.

  2024cites this paper
• Efficiency of Energy Exchange Strategies in Model Bacteriabot Populations

  2024cites this paper
• Multidimensional Insights into Organics Stress on Anammox systems: From a "Molecule-Cell-Ecology" Perspective.

  2024cites this paper
• A framework for understanding collective microbiome metabolism

  2024cites this paper
• Land use change impact on bacterial functional evenness

  2024cites this paper
• Tryptophan transport gene inactivation promotes the development of antibiotic resistance in Escherichia coli.

  2024cites this paper
• Interaction range of common goods shapes Black Queen dynamics beyond the cheater-cooperator narrative

  2024cites this paper
• Bifidobacterium longum subsp. longum BG-L47 boosts growth and activity of Limosilactobacillus reuteri DSM 17938 and its extracellular membrane vesicles

  2024cites this paper
• Impacts of fertilization methods on Salvia miltiorrhiza quality and characteristics of the epiphytic microbial community

  2024cites this paper
• Are Bacteria Leaky? Mechanisms of Metabolite Externalization in Bacterial Cross-Feeding.

  2023cites this paper
• Bacteriophage-mediated lysis supports robust growth of amino acid auxotrophs

  2023cites this paper
• Cross-feeding in the gut microbiome: Ecology and mechanisms.

  2023cites this paper
• Discovery of novel amino acid production traits by evolution of synthetic co-cultures

  2023cites this paper
• Spontaneously established syntrophic yeast communities improve bioproduction

  2023cites this paper
• Amino acid auxotrophies in human gut bacteria are linked to higher microbiome diversity and long-term stability

  2023cites this paper
• Stress-induced metabolic exchanges between complementary bacterial types underly a dynamic mechanism of inter-species stress resistance

  2023cites this paper
• Bacteriophage-mediated lysis supports robust growth of amino acid auxotrophs

  2023cites this paper
• Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities

  2023cites this paper
• Potential bacterial isolation by dosing metabolites in cross-feedings.

  2023cites this paper
• Unveiling abundance-dependent metabolic phenotypes of microbial communities

  2023cites this paper
• Eco-evolutionary modelling of microbial syntrophy indicates the robustness of cross-feeding over cross-facilitation

  2023cites this paper
• Microbial collaborations and conflicts: unraveling interactions in the gut ecosystem

  2023cites this paper
• Advances in linking single-cell bacterial stress response to population-level survival.

  2023cites this paper
• Metabolic characteristics and the cross-feeding of Bacillus and Ca. Brocadia in an integrated partial denitrification-anammox reactor driven by glycerol

  2023cites this paper
• A Two-Compartment Fermentation System to Quantify Strain-Specific Interactions in Microbial Co-Cultures

  2023cites this paper
• Minorities drive growth resumption in cross-feeding microbial communities

  2023cites this paper
• Towards a mathematical understanding of invasion resistance in multispecies communities

  2023cites this paper
• Metabolic insights into how multifunctional microbial consortium enhances atrazine removal and phosphorus uptake at low temperature.

  2023cites this paper
• Metabolic exchanges are ubiquitous in natural microbial communities

  2023cites this paper
• Uncovering the processes of microbial community assembly in the near-surface sediments of a climate-sensitive glacier-fed lake.

  2023cites this paper
• Metabolic cross-feeding enhances branched-chain aldehydes production in a synthetic community of fermented sausages.

  2023cites this paper
• Population dynamics of cross-protection against β-lactam antibiotics in droplet microreactors

  2023cites this paper
• Rickettsiales’ deep evolutionary history sheds light on the emergence of intracellular lifestyles

  2023cites this paper
• Performance, microbial growth and community interactions of iron-dependent denitrification in freshwaters.

  2023cites this paper
• Coculture of Trichoderma harzianum and Bacillus velezensis Based on Metabolic Cross-Feeding Modulates Lipopeptide Production

  2022cites this paper
• Communities of niche-optimized strains (CoNoS) - Design and creation of stable, genome-reduced co-cultures.

  2022cites this paper
• Obligate mutualistic cooperation limits evolvability

  2022cites this paper
• Indirect exclusion can promote cooperation in repeated group interactions

  2022cites this paper
• Dynamic character displacement among a pair of bacterial phyllosphere commensals in situ

  2022cites this paper
• Complex Ecotype Dynamics Evolve in Response to Fluctuating Resources

  2022cites this paper
• Noisy metabolism can promote microbial cross-feeding

  2022cites this paper
• The Evolution of Microbial Facilitation: Sociogenesis, Symbiogenesis, and Transition in Individuality

  2022cites this paper
• Investigating the eco-evolutionary tunnels for establishing cooperative communities.

  2022cites this paper
• Design of stable and self-regulated microbial consortia for chemical synthesis

  2022cites this paper
• Impact of direct physical association and motility on fitness of a synthetic interkingdom microbial community

  2022cites this paper
• Guided by the principles of microbiome engineering: Accomplishments and perspectives for environmental use

  2022cites this paper
• Mycorrhizae helper bacteria for managing the mycorrhizal soil infectivity

  2022cites this paper
• A microbial community growth model for dynamic phenotype predictions

  2022cites this paper
• Metabolic Profiling of Interspecies Interactions During Sessile Bacterial Cultivation Reveals Growth and Sporulation Induction in Paenibacillus amylolyticus in Response to Xanthomonas retroflexus

  2022cites this paper