Fluorescence measurements on the E.coli DNA polymerase clamp loader: implications for conformational changes during ATP and clamp binding.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Journal of Molecular Biology

• Publication date

  2004-03-05

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1016/J.JMB.2003.12.074PMID 15037068
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Mechanism of the delta wrench in opening the beta sliding clamp.

  2003cited by this paper
• Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine.

  2003cited by this paper
• Ordered ATP Hydrolysis in the γ Complex Clamp Loader AAA+ Machine*

  2003cited by this paper
• Mechanism of the δ Wrench in Opening the β Sliding Clamp*

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• Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences

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• Three-Dimensional Structure of the p Subunit of E . coli DNA Polymerase Ill Haloenzyme : A Sliding DNA Clamp

  2003cited by this paper
• Evidence for an internal entropy contribution to phosphoryl transfer: a study of domain closure, backbone flexibility, and the catalytic cycle of cAMP-dependent protein kinase.

  2002cited by this paper
• AAA proteins.

  2002cited by this paper
• A three-domain structure for the delta subunit of the DNA polymerase III holoenzyme delta domain III binds delta' and assembles into the DnaX complex.

  2002cited by this paper
• A Three-domain Structure for the δ Subunit of the DNA Polymerase III Holoenzyme δ Domain III Binds δ′ and Assembles into the DnaX Complex*

  2002cited by this paper
• Clamp loaders and sliding clamps.

  2002cited by this paper
• ATP Utilization by Yeast Replication Factor C

  2001cited by this paper
• Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III.

  2001cited by this paper
• Intricacies in ATP-dependent clamp loading: variations across replication systems.

  2001cited by this paper
• Atomic structure of the clamp loader small subunit from Pyrococcus furiosus.

  2001cited by this paper
• ATP Utilization by Yeast Replication Factor C I. ATP-MEDIATED INTERACTION WITH DNA AND WITH PROLIFERATING CELL NUCLEAR ANTIGEN*

  2001cited by this paper
• Application of fluorescence resonance energy transfer to the GroEL-GroES chaperonin reaction.

  2001cited by this paper
• Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer

  2001cited by this paper
• Mechanism of beta clamp opening by the delta subunit of Escherichia coli DNA polymerase III holoenzyme.

  2001cited by this paper
• ATP Utilization by Yeast Replication Factor C III. THE ATP-BINDING DOMAINS OF Rfc2, Rfc3, AND Rfc4 ARE ESSENTIAL FOR DNA RECOGNITION AND CLAMP LOADING*

  2001cited by this paper
• Mechanism of Processivity Clamp Opening by the Delta Subunit Wrench of the Clamp Loader Complex of E. coli DNA Polymerase III: Structure of the beta-delta complex

  2001cited by this paper
• Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.

  2001cited by this paper
• ATP Utilization by Yeast Replication Factor C

  2001cited by this paper
• Mechanism of β Clamp Opening by the δ Subunit ofEscherichia coli DNA Polymerase III Holoenzyme*

  2001cited by this paper
• Crystal Structure of the Processivity Clamp Loader Gamma ( ) Complex of E. coli DNA Polymerase III

  2001cited by this paper
• tau binds and organizes Escherichia coli replication proteins through distinct domains: domain III, shared by gamma and tau, oligomerizes DnaX.

  2001cited by this paper
• Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC.

  2001cited by this paper
• ATP Utilization by Yeast Replication Factor C

  2001cited by this paper
• ATP Utilization by Yeast Replication Factor C

  2001cited by this paper
• τ Binds and Organizes Escherichia coli Replication Proteins through Distinct Domains

  2001cited by this paper
• Dissection of the ATP-driven reaction cycle of the bacteriophage T4 DNA replication processivity clamp loading system.

  2001cited by this paper
• Tracking sliding clamp opening and closing during bacteriophage T4 DNA polymerase holoenzyme assembly.

  2000cited by this paper
• A FRET-based sensor reveals large ATP hydrolysis-induced conformational changes and three distinct states of the molecular motor myosin.

  2000cited by this paper
• Sliding clamp of the bacteriophage T4 polymerase has open and closed subunit interfaces in solution.

  1999cited by this paper
• Assembly , Operation , and Disassembly of Protein Complexes : A Class of Chaperone-Like ATPases Associated with the + AAA

  1999cited by this paper
• Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.

  1999cited by this paper
• Archaeal DNA replication: identifying the pieces to solve a puzzle.

  1999cited by this paper
• AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.

  1999cited by this paper
• The internal workings of a DNA polymerase clamp‐loading machine

  1999cited by this paper
• The DNA replication fork in eukaryotic cells.

  1998cited by this paper
• Structural Analyses of gp45 Sliding Clamp Interactions during Assembly of the Bacteriophage T4 DNA Polymerase Holoenzyme

  1997cited by this paper
• Structural Analyses of gp45 Sliding Clamp Interactions during Assembly of the Bacteriophage T4 DNA Polymerase Holoenzyme

  1997cited by this paper
• Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III.

  1997cited by this paper
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  1997cited by this paper
• Structural Analyses of gp45 Sliding Clamp Interactions during Assembly of the Bacteriophage T4 DNA Polymerase Holoenzyme

  1997cited by this paper
• DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine.

  1995cited by this paper
• Assembly of a Chromosomal Replication Machine: Two DNA Polymerases, a Clamp Loader, and Sliding Clamps in One Holoenzyme Particle.

  1995cited by this paper
• Assembly of a Chromosomal Replication Machine: Two DNA Polymerases, a Clamp Loader, and Sliding Clamps in One Holoenzyme Particle. I. ORGANIZATION OF THE CLAMP LOADER (*)

  1995cited by this paper
• Assembly of a Chromosomal Replication Machine: Two DNA Polymerases, a Clamp Loader, and Sliding Clamps in One Holoenzyme Particle.

  1995cited by this paper
• Resonance energy transfer: methods and applications.

  1994cited by this paper
• DNA polymerase III accessory proteins. I. holA and holB encoding delta and delta'.

  1993cited by this paper
• DNA polymerase III accessory proteins. V. Theta encoded by holE.

  1993cited by this paper
• Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme.

  1990cited by this paper
• Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame.

  1990cited by this paper
• The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting.

  1990cited by this paper
• Processive replication is contingent on the exonuclease subunit of DNA polymerase III holoenzyme.

  1990cited by this paper
• Principles of fluorescence spectroscopy

  1983cited by this paper
• Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template.

  1981influential reference
• Fluorescence energy transfer as a spectroscopic ruler.

  1978cited by this paper
• Spectroscopic determination of tryptophan and tyrosine in proteins.

  1967cited by this paper

• The bacterial DNA sliding clamp, β-clamp: structure, interactions, dynamics and drug discovery

  2024cites this paper
• Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication

  2024influential citation
• Structural characterisation of the complete cycle of sliding clamp loading in Escherichia coli

  2023influential citation
• Differences in clamp loader mechanism between bacteria and eukaryotes

  2023cites this paper
• Cryo-EM structures reveal high-resolution mechanism of a DNA

  2022cites this paper
• Clamp Loader Processing Is Important during DNA Replication Stress

  2022cites this paper
• The AAA+ superfamily: a review of the structural and mechanistic principles of these molecular machines

  2021cites this paper
• Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader

  2021cites this paper
• Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism

  2020influential citation
• Structure of the human clamp loader reveals an autoinhibited conformation of a substrate-bound AAA+ switch

  2020cites this paper
• Dynamics of the E. coli β-Clamp Dimer Interface and Its Influence on DNA Loading.

  2019cites this paper
• Single-molecule studies contrast ordered DNA replication with stochastic translesion synthesis

  2017influential citation
• Review: The lord of the rings: Structure and mechanism of the sliding clamp loader

  2016cites this paper
• Investigating Dynamics Using Three Systems: Cy3 on DNA, ME1 Heterodimers, and DNA Processivity Clamps

  2015cites this paper
• The dynamics of Y-family DNA polymerases and their accessory factors

  2014cites this paper
• Use of FRET to Study Dynamics of DNA Replication

  2014cites this paper
• DNA Rough-Set Computing in the Development of Decision Rule Reducts

  2013cites this paper
• Replication clamps and clamp loaders.

  2013cites this paper
• Macromolecular Crystallography

  2012cites this paper
• Clamp loader ATPases and the evolution of DNA replication machinery

  2012cites this paper
• GFP-like fluorophores as DNA labels for studying DNA-protein interactions.

  2012cites this paper
• Molecular Mechanisms of DNA Polymerase Clamp Loaders

  2012cites this paper
• Solutions to decision-making problems in management engineering using molecular computational algorithms and experimentations

  2011cites this paper
• Structural studies on E.coli DNA polymerase III clamp loader subcomplexes

  2010cites this paper
• The mechanism of ATP-dependent primer-template recognition by a clamp loader complex.

  2009cites this paper
• Escherichia coli mismatch repair protein MutL interacts with the clamp loader subunits of DNA polymerase III.

  2008cites this paper
• Comparative Studies of Processivity Clamp Loader ATP Site Function.

  2007influential citation
• Clamp loaders and replication initiation.

  2006cites this paper
• Proteomic dissection of DNA polymerization

  2006cites this paper
• Mapping the interaction of DNA with the Escherichia coli DNA polymerase clamp loader complex

  2005cites this paper
• Cellular DNA replicases: components and dynamics at the replication fork.

  2005cites this paper
• Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis.

  2005cites this paper
• RecA-like motor ATPases--lessons from structures.

  2004cites this paper
• Dual functions, clamp opening and primer-template recognition, define a key clamp loader subunit.

  2004cites this paper
• Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex.

  2004cites this paper
• Structural analysis of a eukaryotic sliding DNA clamp–clamp loader complex

  2004cites this paper
• The bacterial DNA sliding clamp, -clamp structure, interactions, dynamics and drug discovery

  year unknowncites this paper