Comprehensive transcriptome analysis of auxin responses in Arabidopsis.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Molecular Plant

• Publication date

  2008-03-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/mp/ssm021PMID 19825543
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Microarray-based method for detection of unknown genetic modifications

  2007cited by this paper
• Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses.

  2006cited by this paper
• Auxin in action: signalling, transport and the control of plant growth and development

  2006cited by this paper
• The D-Type Cyclin CYCD3;1 Is Limiting for the G1-to-S-Phase Transition in Arabidopsis[W]

  2006cited by this paper
• Transcriptomic Footprints Disclose Specificity of Reactive Oxygen Species Signaling in Arabidopsis1[W]

  2006cited by this paper
• Transcriptional Regulation of Gibberellin Metabolism Genes by Auxin Signaling in Arabidopsis1[W]

  2006cited by this paper
• The Arabidopsis Aux/IAA Protein Family Has Diversified in Degradation and Auxin Responsiveness[W]

  2006cited by this paper
• Inhibition of Brassinosteroid Biosynthesis by Either a dwarf4 Mutation or a Brassinosteroid Biosynthesis Inhibitor Rescues Defects in Tropic Responses of Hypocotyls in the Arabidopsis Mutant nonphototropic hypocotyl 41

  2006cited by this paper
• A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling

  2006cited by this paper
• Characterization of an Arabidopsis Enzyme Family That Conjugates Amino Acids to Indole-3-Acetic Acidw⃞

  2005cited by this paper
• Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation

  2005cited by this paper
• WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators

  2005cited by this paper
• Functional Genomic Analysis of the AUXIN RESPONSE FACTOR Gene Family Members in Arabidopsis thaliana: Unique and Overlapping Functions of ARF7 and ARF19w⃞

  2005cited by this paper
• A gene expression map of Arabidopsis thaliana development

  2005cited by this paper
• Functional Genomic Analysis of the AUXIN/INDOLE-3-ACETIC ACID Gene Family Members in Arabidopsis thaliana[W]

  2005cited by this paper
• Auxin: regulation, action, and interaction.

  2005cited by this paper
• Cell Cycle Progression in the Pericycle Is Not Sufficient for SOLITARY ROOT/IAA14-Mediated Lateral Root Initiation in Arabidopsis thalianaw⃞

  2005cited by this paper
• Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression

  2005cited by this paper
• Arabidopsis thickvein Mutation Affects Vein Thickness and Organ Vascularization, and Resides in a Provascular Cell-Specific Spermine Synthase Involved in Vein Definition and in Polar Auxin Transport1

  2005cited by this paper
• AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator.

  2005cited by this paper
• The PIN auxin efflux facilitators: evolutionary and functional perspectives.

  2005cited by this paper
• Computational representation of developmental genetic regulatory networks.

  2005cited by this paper
• NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation.

  2005cited by this paper
• BAS1 and SOB7 act redundantly to modulate Arabidopsis photomorphogenesis via unique brassinosteroid inactivation mechanisms.

  2005cited by this paper
• Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades.

  2005cited by this paper
• Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis of Arabidopsis thaliana

  2005cited by this paper
• Identification of inhibitors of auxin transcriptional activation by means of chemical genetics in Arabidopsis.

  2004cited by this paper
• MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

  2004cited by this paper
• Interdependency of Brassinosteroid and Auxin Signaling in Arabidopsis

  2004cited by this paper
• Transcript profiling of early lateral root initiation.

  2004cited by this paper
• Contrasting Modes of Diversification in the Aux/IAA and ARF Gene Families1[w]

  2004cited by this paper
• Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.

  2004cited by this paper
• BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis

  2004cited by this paper
• Funneling auxin action: specificity in signal transduction.

  2004cited by this paper
• Brassinosteroids Interact with Auxin to Promote Lateral Root Development in Arabidopsis1

  2004cited by this paper
• Unique and Overlapping Expression Patterns among the Arabidopsis 1-Amino-Cyclopropane-1-Carboxylate Synthase Gene Family Members1[w]

  2004cited by this paper
• The Embryo MADS Domain Protein AGAMOUS-Like 15 Directly Regulates Expression of a Gene Encoding an Enzyme Involved in Gibberellin Metabolism

  2004cited by this paper
• The Auxin-induced Maize Gene ZmSAUR2 Encodes a Short-lived Nuclear Protein Expressed in Elongating Tissues*

  2003cited by this paper
• Summaries of Affymetrix GeneChip probe level data.

  2003cited by this paper
• Cytokinin-Deficient Transgenic Arabidopsis Plants Show Multiple Developmental Alterations Indicating Opposite Functions of Cytokinins in the Regulation of Shoot and Root Meristem Activity Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.014928

  2003cited by this paper
• p-Chlorophenoxyisobutyric Acid Impairs Auxin Response in Arabidopsis Root1

  2003cited by this paper
• SIR1, an Upstream Component in Auxin Signaling Identified by Chemical Genetics

  2003cited by this paper
• Brassinolide Induces IAA5, IAA19, and DR5, a Synthetic Auxin Response Element in Arabidopsis, Implying a Cross Talk Point of Brassinosteroid and Auxin Signaling

  2003cited by this paper
• Biochemical Diversity among the 1-Amino-cyclopropane-1-Carboxylate Synthase Isozymes Encoded by the Arabidopsis Gene Family*

  2003cited by this paper
• The auxin-induced transcriptome for etiolated Arabidopsis seedlings using a structure/function approach

  2003cited by this paper
• Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis

  2002cited by this paper
• A pharmacological approach to test the diffusible signal activity of reactive oxygen intermediates in elicitor-treated tobacco leaves.

  2002cited by this paper
• Auxin-responsive gene expression: genes, promoters and regulatory factors

  2002cited by this paper
• The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis.

  2002cited by this paper
• The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.

  2002cited by this paper
• Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity.

  2002cited by this paper
• Rapid Degradation of Auxin/Indoleacetic Acid Proteins Requires Conserved Amino Acids of Domain II and Is Proteasome Dependent

  2001cited by this paper
• Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins

  2001cited by this paper
• AUX/IAA Proteins Are Active Repressors, and Their Stability and Activity Are Modulated by Auxin Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010289.

  2001cited by this paper
• Ethylene signaling: from mutants to molecules.

  2000cited by this paper
• Evidence that auxin promotes gibberellin A1 biosynthesis in pea.

  2000cited by this paper
• Auxin is required for leaf vein pattern in Arabidopsis.

  1999cited by this paper
• Biochemistry and Molecular Biology of Plant Hormones

  1999cited by this paper
• Responses of plant vascular systems to auxin transport inhibition.

  1999cited by this paper
• Activation and repression of transcription by auxin-response factors.

  1999cited by this paper
• EIN4 and ERS2 Are Members of the Putative Ethylene Receptor Gene Family in Arabidopsis

  1998cited by this paper
• The DWF4 Gene of Arabidopsis Encodes a Cytochrome P450 That Mediates Multiple 22α-Hydroxylation Steps in Brassinosteroid Biosynthesis

  1998cited by this paper
• Sur2 mutations of Arabidopsis thaliana define a new locus involved in the control of auxin homeostasis.

  1998cited by this paper
• Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements.

  1997cited by this paper
• ARF1, a transcription factor that binds to auxin response elements.

  1997cited by this paper
• HOOKLESS1, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocotyl.

  1996cited by this paper
• Gentleman R: R: A language for data analysis and graphics

  1996cited by this paper
• Oxidative Stimulation of Glutathione Synthesis in Arabidopsis thaliana Suspension Cultures

  1993cited by this paper
• Induction and superinduction of auxin-responsive mRNAs with auxin and protein synthesis inhibitors.

  1990cited by this paper
• Rapid redistribution of auxin-regulated RNAs during gravitropism.

  1989cited by this paper
• Early auxin-regulated polyadenylylated mRNA sequences in pea stem tissue.

  1982cited by this paper
• Patterns in plant development: Subject index

  1972cited by this paper

• How reduced microtubule dynamics affect gene expression in Arabidopsis thaliana

  2026cites this paper
• The transcription factor AtVIP1 promotes sorghum root development by interacting with the SbARF7 promoter

  2026cites this paper
• 3-Hydroxydecanoic Acid: A Natural Growth Regulator for Optimizing Wheat Development and Yield by Modulating Auxin and Gibberellin Pathways.

  2025cites this paper
• The response of Petunia × atkinsiana 'Pegasus Special Burgundy Bicolor’ to mechanical stress encompassing morphological changes as well as physiological and molecular factors

  2025cites this paper
• RNA-Seq Analysis Reveals Potential Genes Involved in Plant Growth Regulator-Induced Ovary Development in Male Kiwifruit (Actinidia eriantha)

  2025cites this paper
• Deciphering the Mechanisms That Regulate Variability in Induced Systemic Resistance Among Tomato Genotypes.

  2025cites this paper
• The TPX family of co‐repressors: a hub amidst the hubbub

  2025cites this paper
• Conserved roles of ETT and ARF4 in gynoecium development in Brassicaceae with distinct fruit shapes

  2025cites this paper
• Auxin‐mimic herbicides dilema: Their benefits and limitations

  2025cites this paper
• The transcription factor TaWRKY27 confers enhanced stripe rust susceptibility by facilitating auxin accumulation in wheat.

  2025cites this paper
• Transcriptional Tuning: How Auxin Strikes Unique Chords in Gene Regulation

  2025cites this paper
• Thiamine and Indole-3-acetic Acid Mediated Detoxification of Arsenic in Maize to Improve Grain Proximate Components, Yield, and Nutrient Ingredients

  2025cites this paper
• Germin-like protein 1 interacts with proteasome regulator 1 to regulate auxin signaling by controlling Aux/IAA homeostasis.

  2025cites this paper
• Novel carbon nanoparticles derived from Bougainvillea modulate vegetative growth via auxin–cytokinin signaling in Arabidopsis

  2024cites this paper
• Genome mining of WOX-ARF gene linkage in Machilus pauhoi underpinned cambial activity associated with IAA induction

  2024cites this paper
• Plasma membrane H+‐ATPase activation increases global transcript levels and promotes the shoot growth of light‐grown Arabidopsis seedlings

  2024cites this paper
• Exploring the Impact of Endophytic Fungus Aspergillus cejpii DMKU-R3G3 on Rice: Plant Growth Promotion and Molecular Insights through Proteomic Analysis

  2024cites this paper
• Ultraviolet induced endophytic Aspergillus tamari SK12 revealed faster growth and modulation of physiochemical attributes of okra under copper stress

  2024cites this paper
• Actin-bundling protein fimbrin serves as a new auxin biosynthesis orchestrator in Arabidopsis root tips.

  2024cites this paper
• A Medicago truncatula HD-ZIP gene MtHB2 is involved in modulation of root development by regulating auxin response

  2024cites this paper
• Auxin metabolism and the modulation of plant growth

  2024cites this paper
• Comparative genomic profiling of transport inhibitor Response1/Auxin signaling F-box (TIR1/AFB) genes in eight Pyrus genomes revealed the intraspecies diversity and stress responsiveness patterns

  2024cites this paper
• The effects of different hormone combinations on the growth of Panax notoginseng anther callus based on metabolome analysis

  2024cites this paper
• A novel mutation in IAA16 is associated with dicamba resistance in Chenopodium album.

  2024cites this paper
• Genome-wide analysis and expression characteristics of Small Auxin-up RNAs genes in flax (Linum usitatissimum L.)

  2024cites this paper
• Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia

  2024cites this paper
• Genome-wide identification, characterization, and expression analysis of the sweet potato (Ipomoea batatas [L.] Lam.) ARF, Aux/IAA, GH3, and SAUR gene families

  2023cites this paper
• Selenite reduced cadmium uptake, interfered signal transduction of endogenous phytohormones, and stimulated secretion of tartaric acid based on a combined analysis of non-invasive micro-test technique, transcriptome and metabolome.

  2023cites this paper
• Genome-wide analysis of the SAUR gene family and function exploration of DlSAUR32 during early longan somatic embryogenesis.

  2023cites this paper
• A genetic screen for dominant chloroplast reactive oxygen species signaling mutants reveals life stage-specific singlet oxygen signaling networks

  2023cites this paper
• GOLVEN peptides regulate lateral root spacing as part of a negative feedback loop on the establishment of auxin maxima.

  2023cites this paper
• Ticarcillin degradation product thiophene acetic acid is a novel auxin analog that promotes organogenesis in tomato

  2023cites this paper
• Multiple light signaling pathways control solar tracking in sunflowers

  2023cites this paper
• New fluorescent auxin derivatives: anti-auxin activity and accumulation patterns in Arabidopsis thaliana

  2023influential citation
• Different evolutionary patterns of TIR1/AFBs and AUX/IAAs and their implications for the morphogenesis of land plants

  2023cites this paper
• Optimization of the growth conditions through response surface methodology and metabolomics for maximizing the auxin production by Pantoea agglomerans C1

  2023cites this paper
• Application of Long-Chained Auxin Conjugates Influenced Auxin Metabolism and Transcriptome Response in Brassica rapa L. ssp. pekinensis

  2023cites this paper
• Expression of CsSCL1 and Rooting Response in Chestnut Leaves Are Dependent on the Auxin Polar Transport and the Ontogenetic Origin of the Tissues

  2023cites this paper
• Identification of a pluripotency-inducing small compound, PLU, that induces callus formation via Heat Shock Protein 90-mediated activation of auxin signaling

  2023cites this paper
• Ethylene response factor ERF022 is involved in regulating Arabidopsis root growth

  2023cites this paper
• Molecular and cellular insights into auxin-regulated primary root growth: a comparative study of Arabidopsis and rice.

  2023cites this paper
• Parthenocarpic tomato mutants, iaa9-3 and iaa9-5, show plant adaptability and fruiting ability under heat-stress conditions

  2023cites this paper
• Molecular characterization of the SAUR gene family in sweet cherry and functional analysis of PavSAUR55 in the process of abscission1

  2023cites this paper
• Spatial regulation of plant hormone action

  2023cites this paper
• To grow up or not: SUMOylation of IAA7 acts as a key molecular switch of auxin signaling.

  2023cites this paper
• A matter of time: auxin signaling dynamics and the regulation of auxin responses during plant development.

  2023cites this paper
• Lateral Root Initiation in Cucumber (Cucumis sativus): What Does the Expression Pattern of Rapid Alkalinization Factor 34 (RALF34) Tell Us?

  2023influential citation
• Maize grain nutritional quality amelioration with seed-applied thiamine and indole-3-acetic acid under arsenic toxicity

  2023cites this paper
• SUMO E3 ligase AtMMS21-dependent SUMOylation of AUXIN/INDOLE-3-ACETIC ACID 17 regulates auxin signaling.

  2022cites this paper
• Transcriptomic Evidence Reveals Low Gelatinous Layer Biosynthesis in Neolamarckia cadamba after Gravistimulation

  2022cites this paper
• Integrated metabolomic and transcriptomic analyses reveal different metabolite biosynthesis profiles of Juglans mandshurica in shade

  2022cites this paper
• GOLVEN peptides regulate lateral root spacing as part of a negative feedback loop on the establishment of auxin maxima

  2022cites this paper
• Whole-genome resequencing identified QTLs, candidate genes and Kompetitive Allele-Specific PCR markers associated with the large fruit of Atlantic Giant (Cucurbita maxima)

  2022cites this paper
• The MdAux/IAA2 Transcription Repressor Regulates Cell and Fruit Size in Apple Fruit

  2022cites this paper
• Photosynthetic-Product–Dependent Activation of Plasma Membrane H+-ATPase and Nitrate Uptake in Arabidopsis Leaves

  2022cites this paper
• Genome-Wide Identification, Expression and Interaction Analysis of ARF and AUX/IAA Gene Family in Soybean.

  2022cites this paper
• Genome-wide characterization and expression analysis of SAUR gene family in Melon (Cucumis melo L.)

  2022cites this paper
• Chemical genetic screening identifies nalacin as an inhibitor of GH3 amido synthetase for auxin conjugation

  2022cites this paper
• Insight into VvGH3 genes evolutional relationship from monocotyledons and dicotyledons reveals that VvGH3-9 negatively regulates the drought tolerance in transgenic Arabidopsis.

  2022cites this paper
• Identification of TabZIP family members with possible roles in the response to auxin in wheat roots.

  2022cites this paper
• Functional Antagonism of WRI1 and TCP20 Modulates GH3.3 Expression to Maintain Auxin Homeostasis in Roots

  2022cites this paper
• Analysis of the Small Auxin-Up RNA (SAUR) Genes Regulating Root Growth Angle (RGA) in Apple

  2022cites this paper
• Space omics research in Europe: Contributions, geographical distribution and ESA member state funding schemes

  2022cites this paper
• The impact of stress combination on reproductive processes in crops.

  2021cites this paper
• Jasmonic Acid-Dependent MYC Transcription Factors Bind to a Tandem G-Box Motif in the YUCCA8 and YUCCA9 Promoters to Regulate Biotic Stress Responses

  2021cites this paper
• Hormone Orchestrates a Hierarchical Transcriptional Cascade That Regulates Al-Induced De Novo Root Regeneration in Tea Nodal Cutting.

  2021cites this paper
• Genome-wide identification of auxin response factors (ARFs) in three different species of Arachis

  2021cites this paper
• Abiotic stress-related genes governing signal transduction cascades in wild plants with emphasis to those in Hordeum spontaneum

  2021influential citation
• Induction of Stress Tolerance in Crops by Applying Nanomaterials

  2021cites this paper
• Identification of tomato root growth regulatory genes and transcription factors through comparative transcriptomic profiling of different tissues

  2021cites this paper
• Aux/IAA and ARF Gene Families in Salix suchowensis: Identification, Evolution, and Dynamic Transcriptome Profiling During the Plant Growth Process

  2021cites this paper
• Function of hydroxycinnamoyl spermidines in seedling growth of Arabidopsis.

  2021cites this paper
• RNA-seq analysis of laser micro-dissected Arabidopsis thaliana leaf epidermis, mesophyll and vasculature defines tissue-specific transcriptional responses to multiple stress treatments.

  2021cites this paper
• Signatures of signaling pathways underlying plant-growth promotion by fungi

  2021cites this paper
• Interaction of brassinosteroid and cytokinin promotes ovule initiation and increases seed number per silique in Arabidopsis.

  2021cites this paper
• Physiological, Biochemical and Transcriptomic Analysis of the Aerial Parts (Leaf-Blade and Petiole) of Asarum sieboldii Responding to Drought Stress

  2021cites this paper
• The role of AUX1 during lateral root development in the domestication of the model C4 grass Setaria italica

  2021cites this paper
• Mechanisms of the enantioselective effects of phenoxyalkanoic acid herbicides DCPP and MCPP.

  2021cites this paper
• Genome-Wide Comprehensive Analysis of the GASA Gene Family in Populus

  2021cites this paper
• Abiotic stress-related genes governing signal transduction cascades in wild plants with emphasis to those in Hordeum spontaneum

  2021cites this paper
• Diclofenac modified the root system architecture of Arabidopsis via interfering with the hormonal activities of auxin.

  2021cites this paper
• The chemical compound ‘Heatin’ stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1‐subfamily of nitrilases

  2021cites this paper
• Casting the Net-Connecting Auxin Signaling to the Plant Genome.

  2021cites this paper
• Do Plasmodesmata Play a Prominent Role in Regulation of Auxin-Dependent Genes at Early Stages of Embryogenesis?

  2021cites this paper
• In silico promoter and expression analyses of rice Auxin Binding Protein 57 (ABP57)

  2021cites this paper
• Functions of Oligosaccharides in Improving Tomato Seeding Growth and Chilling Resistance

  2021cites this paper
• Noncanonical Auxin Signaling.

  2021cites this paper
• Molecular Bases for the Regulation of Adventitious Root Generation in Plants

  2021cites this paper
• PHYSIOLOGICAL AND MOLECULAR MECHANISMS UNDERLYING SALT STRESS TOLERANCE IN JOJOBA (SIMMONDSIA CHINENSIS)

  2021cites this paper
• Heavy metal tolerant endophytic fungiAspergillus welwitschiaeimproves growth, ceasing metal uptake and strengthening antioxidant system inGlycine maxL.

  2021cites this paper
• Identification and Comprehensive Structural and Functional Analyses of the EXO70 Gene Family in Cotton

  2021cites this paper
• The auxin signaling pathway to its PIN transporters: insights based on a meta-analysis of auxin-induced transcriptomes

  2021cites this paper
• Identification, phylogenetic analysis, and expression patterns of the SAUR gene family in loquat (Eriobotrya japonica)

  2020cites this paper
• ARF4 regulates shoot regeneration through coordination with ARF5 and IAA12

  2020cites this paper
• Oil Palm Tissue Culture: Fast Tracking Elite Commercial Lines

  2020cites this paper
• ZEITLUPE facilitates the rhythmic movements of Nicotiana attenuata flowers.

  2020cites this paper
• The Winner Takes It All: Auxin—The Main Player during Plant Embryogenesis

  2020cites this paper
• Stepwise signal transduction cascades under salt stress in leaves of wild barley (Hordeum spontaneum)

  2020cites this paper
• Unearthing the Plant Growth-Promoting Traits of Bacillus megaterium RmBm31, an Endophytic Bacterium Isolated From Root Nodules of Retama monosperma

  2020cites this paper
• A network of transcriptional repressors modulates auxin responses

  2020cites this paper