SCIENCE@home

Draft genome assemblies of four manakins

Xuemei Li,Rongsheng Gao,Guangji Chen,A. Price,Daniel Bilyeli Øksnebjerg,P. Hosner,Yang Zhou,Guojie Zhang,Shaohong Feng

Published 2022 in Scientific Data

ABSTRACT

Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the study of sexual selection. Here we present genome assemblies of four manakin species, including Cryptopipo holochlora, Dixiphia pipra (also known as Pseudopipra pipra), Machaeropterus deliciosus and Masius chrysopterus, generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 29 Mb and contig N50 of 169 Kb. On average, 12,055 protein-coding genes were annotated in the genomes, and 9.79% of the genomes were annotated as repetitive elements. We further identified 75 Mb of Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One notable finding from these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could have occurred in M. chrysopterus. These de novo genomes will contribute to a deeper understanding of evolutionary history and sexual selection in manakins. Measurement(s) whole genome sequencing Technology Type(s) BGISEQ-500 Sequencing Sample Characteristic - Organism Pipridae Measurement(s) whole genome sequencing Technology Type(s) BGISEQ-500 Sequencing Sample Characteristic - Organism Pipridae

PUBLICATION RECORD

CITATION MAP

EXTRACTION MAP

CLAIMS

  • No claims are published for this paper.

CONCEPTS

  • No concepts are published for this paper.

REFERENCES

Showing 1-96 of 96 references · Page 1 of 1

CITED BY