SmpB, a unique RNA‐binding protein essential for the peptide‐tagging activity of SsrA (tmRNA)

No abstract is available for this paper.

• Publication year

  1999

• Venue

  EMBO Journal

• Publication date

  1999-07-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/emboj/18.13.3793PMID 10393194PMCID PMC1171456
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The tmRNA website

  1999cited by this paper
• [A bacterial RNA that functions both as a tRNA and an mRNA].

  1998cited by this paper
• Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches

  1998cited by this paper
• The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system.

  1998cited by this paper
• 3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli.

  1998cited by this paper
• The tmRNA Website

  1998cited by this paper
• A bacterial RNA that functions as both a tRNA and an mRNA.

  1998cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator.

  1997cited by this paper
• Reconstruction of quaternary structures of class II tRNA synthetases by rational mutagenensis of a conserved domain.

  1997cited by this paper
• Probing the structure of the Escherichia coli 10Sa RNA (tmRNA).

  1997cited by this paper
• Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization

  1997cited by this paper
• Phylogenetic analysis of tmRNA secondary structure.

  1996cited by this paper
• 10Sa RNA is associated with 70S ribosome particles in Escherichia coli.

  1996influential reference
• Structure and function of 10Sa RNA: trans-translation system.

  1996cited by this paper
• Role of a Peptide Tagging System in Degradation of Proteins Synthesized from Damaged Messenger RNA

  1996influential reference
• Structural organization of Escherichia coli tmRNA.

  1996cited by this paper
• Interaction of 10Sa RNA with ribosomes in Escherichia coli

  1996influential reference
• C-terminal Extension of Truncated Recombinant Proteins in Escherichia coli with a 10Sa RNA Decapeptide(*)

  1995cited by this paper
• A role for a small stable RNA in modulating the activity of DNA-binding proteins.

  1995influential reference
• Crystal Structure of the Ternary Complex of Phe-tRNAPhe, EF-Tu, and a GTP Analog

  1995cited by this paper
• Elongation factor Tu: a regulatory GTPase with an integrated effector.

  1994cited by this paper
• Excision of a P4-like cryptic prophage leads to Alp protease expression in Escherichia coli

  1994cited by this paper
• Salmonella typhimurium loci involved in survival within macrophages

  1994cited by this paper
• The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

  1994cited by this paper
• tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis.

  1994influential reference
• Three‐dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

  1994cited by this paper
• Role for 10Sa RNA in the growth of lambda-P22 hybrid phage

  1994influential reference
• A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli.

  1994influential reference
• A single-base-pair mutation changes the specificities of both a transcription activation protein and its binding site.

  1993cited by this paper
• Characterization of the transcription activator protein C1 of bacteriophage P22.

  1992cited by this paper
• A precursor for a small stable RNA (10Sa RNA) ofEscherichia coli

  1989cited by this paper
• Identification and characterization of mutations in Escherichia coli that selectively influence the growth of hybrid lambda bacteriophages carrying the immunity region of bacteriophage P22

  1986cited by this paper
• A cII-dependent promoter is located within the Q gene of bacteriophage lambda.

  1985cited by this paper
• Characterization of a third, cII-dependent, coordinately activated promoter on phage lambda involved in lysogenic development.

  1985cited by this paper
• A CII-responsive promoter within the Q gene of bacteriophage lambda.

  1985cited by this paper

• trans-Translation inhibitors that kill M. tuberculosis and pathogenic Non-tuberculous Mycobacteria have a dual mechanism of action

  2026cites this paper
• A trans-translation inhibitor that targets ribosomal protein bL12 kills Mycobacterium tuberculosis

  2025cites this paper
• Translation regulation in Bacillus subtilis and its applications in heterologous protein expression: A review.

  2025cites this paper
• Clinical Isolate of Candida tropicalis from a Patient in North Carolina: Identification, Whole-Genome Sequence Analysis, and Anticandidal Activity of Ganoderma lucidum

  2025cites this paper
• Cooperative and Independent Functionality of tmRNA and SmpB in Aeromonas veronii: A Multifunctional Exploration Beyond Ribosome Rescue

  2025cites this paper
• Identification of polyphosphate-binding proteins in Escherichia coli uncovers targets involved in translation control and ribosome biogenesis

  2025cites this paper
• Expansion of the tmRNA sequence database and new tools for search and visualization

  2025cites this paper
• A trans-translation inhibitor kills Mycobacterium tuberculosis by targeting ribosomal protein bL12

  2025cites this paper
• Hidden genetic diversity among Blochmanniella endosymbionts of closely related carpenter ant populations

  2025influential citation
• Carrot and stick: how RNase R contributes to function and destruction of the translation machinery

  2025cites this paper
• Stalled ribosome rescue factors exert different roles depending on types of antibiotics in Escherichia coli

  2024cites this paper
• The ribosome-associated quality control pathway supports survival in the absence of non-stop ribosome rescue factors

  2024cites this paper
• Similar but Distinct—Biochemical Characterization of the  Staphylococcus aureus Serine Hydrolases FphH and FphI

  2024cites this paper
• Thioredoxin A regulates protein synthesis to maintain carbon and nitrogen partitioning in cyanobacteria

  2024cites this paper
• How the double-ring ClpAP protease motor grips the substrate to unfold and degrade stable proteins

  2024cites this paper
• RqcH supports survival in the absence of non-stop ribosome rescue factors

  2024cites this paper
• RNA-seq reveals multifaceted gene expression response to Fab production in Escherichia coli fed-batch processes with particular focus on ribosome stalling

  2024cites this paper
• Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon

  2024cites this paper
• SsrA and SmpB have multifaceted physiological roles in the black rot pathogen Xanthomonas campestris pathovar campestris.

  2023cites this paper
• Quality control of protein synthesis in the early elongation stage

  2023cites this paper
• Global protein turnover quantification in Escherichia coli reveals cytoplasmic recycling under nitrogen limitation

  2023cites this paper
• Whole genome analysis and cold adaptation strategies of Pseudomonas sivasensis W-6 isolated from the Napahai plateau wetland

  2023cites this paper
• Translation termination in human mitochondria – substrate specificity of mitochondrial release factors

  2023cites this paper
• trans-translation system is important for maintaining genome integrity during DNA damage in bacteria.

  2023cites this paper
• The Genome Reduction Excludes the Ribosomal Rescue System in Acholeplasmataceae

  2022cites this paper
• Bacterial Ribosome Rescue Systems

  2022cites this paper
• Prophage excision switches the primary ribosome rescue pathway and rescue‐associated gene regulations in Escherichia coli

  2022cites this paper
• Drop-off-reinitiation triggered by EF-G-driven mistranslocation and its alleviation by EF-P

  2022cites this paper
• The ribosome rescue pathways SsrA-SmpB, ArfA and ArfB mediate tolerance to heat and antibiotic stresses in Azotobacter vinelandii.

  2022cites this paper
• Druggable differences: Targeting mechanistic differences between trans‐translation and translation for selective antibiotic action

  2022cites this paper
• Insights into the ribosomal trans‐translation rescue system: lessons from recent structural studies

  2022cites this paper
• Identification and characterisation of sPEPs in Cryptococcus neoformans.

  2022cites this paper
• Novel trans-translation-associated gene regulation revealed by prophage excision-triggered switching of ribosome rescue pathway

  2022cites this paper
• Tag-Dependent Substrate Selection of ClpX Underlies Secondary Differentiation of Chlamydia trachomatis

  2022cites this paper
• RtcB2-PrfH Operon Protects E. coli ATCC25922 Strain from Colicin E3 Toxin

  2022cites this paper
• ClpXP Degradation System in Escherichia coli, a Study of Its Energy Sources and Its Applications in Managing the Expression Levels of Targeted Membrane and Soluble Proteins

  2021cites this paper
• Maintaining mitochondrial ribosome function: The role of ribosome rescue and recycling factors

  2021cites this paper
• Trans-Translation Is an Appealing Target for the Development of New Antimicrobial Compounds

  2021cites this paper
• Ribosome Rescue Pathways in Bacteria

  2021cites this paper
• Контроль качества у бактерий, ассоциированный с рибосомами

  2021cites this paper
• RqcH and RqcP catalyze processive poly-alanine synthesis in a reconstituted ribosome-associated quality control system

  2021cites this paper
• tRNA‐like structures and their functions

  2021cites this paper
• Ribosome-Associated Quality Control in Bacteria

  2021cites this paper
• Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex

  2021cites this paper
• Cbl upregulates cysH for hydrogen sulfide production in Aeromonas veronii

  2021cites this paper
• Systematic evolution of initiation factor 3 and the ribosomal protein uS12 optimizes Escherichia coli growth with an unconventional initiator tRNA

  2021cites this paper
• Safe and easy in vitro evaluation of tmRNA-SmpB-mediated trans-translation from ESKAPE pathogenic bacteria

  2021cites this paper
• An overview of the bacterial SsrA system modulating intracellular protein levels and activities

  2020cites this paper
• Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex

  2020cites this paper
• Reassembling green fluorescent protein for in vitro evaluation of trans-translation

  2020cites this paper
• Safe and easy evaluation of tmRNA-SmpB-mediated trans-translation in ESKAPE pathogenic bacteria

  2020cites this paper
• The large genome of Synechococcus moorigangaii CMS01 isolated from a mangrove ecosystem- evidences of motility and adaptive features

  2020cites this paper
• Alkylative damage of mRNA leads to ribosome stalling and rescue by trans translation in bacteria

  2020cites this paper
• Discovery of AAA+ Protease Substrates through Trapping Approaches.

  2019cites this paper
• Improvement in the Orthogonal Protein Degradation in Escherichia coli by Truncated mf-ssrA Tag

  2019cites this paper
• Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

  2019cites this paper
• Codon selection affects recruitment of ribosome-associating factors during translation.

  2019cites this paper
• How a circularized tmRNA moves through the ribosome

  2019cites this paper
• ResQ, a release factor-dependent ribosome rescue factor in the Gram-positive bacterium Bacillus subtilis

  2019cites this paper
• Improvement in the Orthogonal Protein Degradation in Escherichia coli by Truncated mf-ssrA Tag

  2019cites this paper
• Complete Genome Sequence and Comparative Analysis of Synechococcus sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic Habitat

  2019cites this paper
• Human COQ10A and COQ10B are distinct lipid-binding START domain proteins required for coenzyme Q function[S]

  2019cites this paper
• Universal Molecular Triggers of Stress Responses in Cyanobacterium Synechocystis

  2019cites this paper
• Systematic identification of light-regulated cold-responsive proteome in a model cyanobacterium.

  2018cites this paper
• Survival of Anaerobic Fe2+ Stress Requires the ClpXP Protease

  2018cites this paper
• A new mechanism for ribosome rescue can recruit RF1 or RF2 to non-stop ribosomes

  2018cites this paper
• Expression, purification and characterization of the full-length SmpB protein from Mycobacterium tuberculosis.

  2018cites this paper
• A New Mechanism for Ribosome Rescue Can Recruit RF1 or RF2 to Nonstop Ribosomes

  2018cites this paper
• Non-coding RNAs as antibiotic targets.

  2017cites this paper
• Ribosome pausing, arrest and rescue in bacteria and eukaryotes

  2017cites this paper
• Absence of tmRNA Has a Protective Effect against Fluoroquinolones in Streptococcus pneumoniae

  2017cites this paper
• Backbone and side-chain resonance assignments for the tmRNA-binding protein, SmpB, from Mycobacterium tuberculosis

  2017cites this paper
• Backbone and side-chain resonance assignments for the tmRNA-binding protein, SmpB, from Mycobacterium tuberculosis

  2017cites this paper
• ASC1 and RPS3: new actors in 18S nonfunctional rRNA decay

  2017influential citation
• Ribosome‐based quality control of mRNA and nascent peptides

  2017cites this paper
• The Long Hunt for pssR—Looking for a Phospholipid Synthesis Transcriptional Regulator, Finding the Ribosome

  2017cites this paper
• Structural insights into noncanonical mechanisms of translation

  2017cites this paper
• KKL-35 Exhibits Potent Antibiotic Activity against Legionella Species Independently of trans-Translation Inhibition

  2017cites this paper
• Identification of Factors Involved in 18S Nonfunctional Ribosomal RNA Decay and a Method for Detecting 8-oxoguanosine by RNA-Seq

  2017influential citation
• Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism

  2016cites this paper
• New insights in cyanobacterial cold stress responses: Genes, sensors, and molecular triggers.

  2016cites this paper
• Environmental Regulation of Yersinia Pathophysiology

  2016cites this paper
• In silico mining and characterization of bifidobacterial lipoprotein with CHAP domain secreted in an aggregated form.

  2016cites this paper
• Systemic analysis of stress transcriptomics of Synechocystis reveals common stress genes and their universal triggers.

  2016cites this paper
• Trans-translation ensures timely initiation of DNA replication and DnaA synthesis in Escherichia coli.

  2016cites this paper
• Trans-translation is essential in the human pathogen Legionella pneumophila

  2016cites this paper
• Escherichia coli Quorum-Sensing EDF, A Peptide Generated by Novel Multiple Distinct Mechanisms and Regulated by trans-Translation

  2016cites this paper
• Non‐canonical roles of tRNAs and tRNA mimics in bacterial cell biology

  2016cites this paper
• Genetic Regulation of Yersinia pestis.

  2016cites this paper
• Studies on the stress responses of M. tuberculosis : tmRNA and α-crystallins.

  2016cites this paper
• Transfer-messenger RNA and SmpB mediate bacteriostasis in Escherichia coli cells against tRNA cleavage.

  2015cites this paper
• Regulation of bacterial gene expression by ribosome stalling and rescuing

  2015cites this paper
• Ribosome rescue systems in bacteria.

  2015cites this paper
• Small molecule inhibition of trans-translation impairs Staphylococcus aureus viability

  2015cites this paper
• Mechanisms of ribosome rescue in bacteria

  2015cites this paper
• Comparison of Established Diagnostic Methodologies and a Novel Bacterial smpB Real-Time PCR Assay for Specific Detection of Haemophilus influenzae Isolates Associated with Respiratory Tract Infections

  2015cites this paper
• The role of RNase R in trans-translation and ribosomal quality control.

  2015cites this paper
• tmRNA-mediated trans-translation as the major ribosome rescue system in a bacterial cell

  2014cites this paper
• Resolving Nonstop Translation Complexes Is a Matter of Life or Death

  2014cites this paper
• Bacterial trans-Translation: From Functions to Applications

  2014cites this paper