Regulating DNA replication in bacteria.

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Cold Spring Harbor Perspectives in Biology

• Publication date

  2013-04-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1101/cshperspect.a012922PMID 23471435PMCID PMC3683904
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Translesion DNA polymerases.

  2013cited by this paper
• Okazaki fragment metabolism.

  2013cited by this paper
• Replication clamps and clamp loaders.

  2013cited by this paper
• Chromatin and DNA replication.

  2013cited by this paper
• Helicase loading at chromosomal origins of replication.

  2013cited by this paper
• DNA replication origins.

  2013cited by this paper
• An Easy-To-Use Simulation Program Demonstrates Variations in Bacterial Cell Cycle Parameters Depending on Medium and Temperature

  2012cited by this paper
• Replication fork movement and methylation govern SeqA binding to the Escherichia coli chromosome

  2012cited by this paper
• Highly organized DnaA–oriC complexes recruit the single-stranded DNA for replication initiation

  2011influential reference
• Faculty Opinions recommendation of DNA stretching by bacterial initiators promotes replication origin opening.

  2011cited by this paper
• Regulation of the Activity of the Dual-Function DnaA Protein in Caulobacter crescentus

  2011cited by this paper
• Spo0J regulates the oligomeric state of Soj to trigger its switch from an activator to an inhibitor of DNA replication initiation

  2011cited by this paper
• Regulation of DnaA assembly and activity: taking directions from the genome.

  2011cited by this paper
• The Sporulation Protein SirA Inhibits the Binding of DnaA to the Origin of Replication by Contacting a Patch of Clustered Amino Acids

  2011influential reference
• DiaA/HobA and DnaA: a pair of proteins co-evolved to cooperate during bacterial orisome assembly.

  2011cited by this paper
• DNA stretching by bacterial initiators promotes replication origin melting

  2011cited by this paper
• Suppressors of DnaAATP imposed overinitiation in Escherichia coli

  2011cited by this paper
• Replication initiation at the Escherichia coli chromosomal origin.

  2011cited by this paper
• The G157C mutation in the Escherichia coli sliding clamp specifically affects initiation of replication

  2011cited by this paper
• DnaA Protein DNA-binding Domain Binds to Hda Protein to Promote Inter-AAA+ Domain Interaction Involved in Regulatory Inactivation of DnaA*

  2011cited by this paper
• Regulation of chromosomal replication initiation by oriC-proximal DnaA-box clusters in Bacillus subtilis

  2011cited by this paper
• Novel essential residues of Hda for interaction with DnaA in the regulatory inactivation of DnaA: unique roles for Hda AAA+ Box VI and VII motifs

  2010cited by this paper
• Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC

  2010influential reference
• DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity.

  2010influential reference
• Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

  2010cited by this paper
• ppGpp inhibits the activity of Escherichia coli DnaG primase.

  2010cited by this paper
• Structural insight into Helicobacter pylori DNA replication initiation

  2010cited by this paper
• The structure of a DnaA/HobA complex from Helicobacter pylori provides insight into regulation of DNA replication in bacteria

  2009cited by this paper
• Feedback Control of DnaA-Mediated Replication Initiation by Replisome-Associated HdaA Protein in Caulobacter

  2009cited by this paper
• SirA enforces diploidy by inhibiting the replication initiator DnaA during spore formation in Bacillus subtilis

  2009influential reference
• DnaA protein interacts with RNA polymerase and partially protects it from the effect of rifampicin

  2009cited by this paper
• Specific genomic sequences of E. coli promote replicational initiation by directly reactivating ADP-DnaA.

  2009influential reference
• A Reduction in Ribonucleotide Reductase Activity Slows Down the Chromosome Replication Fork but Does Not Change Its Localization

  2009cited by this paper
• DnaA structure, function, and dynamics in the initiation at the chromosomal origin.

  2009cited by this paper
• Initiating chromosome replication in E. coli: it makes sense to recycle.

  2009cited by this paper
• Loss of Hda activity stimulates replication initiation from I‐box, but not R4 mutant origins in Escherichia coli

  2009cited by this paper
• A structural basis for the regulatory inactivation of DnaA.

  2009cited by this paper
• DiaA Dynamics Are Coupled with Changes in Initial Origin Complexes Leading to Helicase Loading*

  2009influential reference
• YabA of Bacillus subtilis controls DnaA‐mediated replication initiation but not the transcriptional response to replication stress

  2009influential reference
• The Escherichia coli SeqA protein.

  2009cited by this paper
• Growth rate dependent numbers of SeqA structures organize the multiple replication forks in rapidly growing Escherichia coli

  2009cited by this paper
• A Common Mechanism for the ATP-DnaA-dependent Formation of Open Complexes at the Replication Origin*

  2008cited by this paper
• Modes of Overinitiation, dnaA Gene Expression, and Inhibition of Cell Division in a Novel Cold-Sensitive hda Mutant of Escherichia coli

  2008cited by this paper
• The initiator protein DnaA contributes to keeping new origins inactivated by promoting the presence of hemimethylated DNA.

  2008cited by this paper
• Control of bacterial transcription, translation and replication by (p)ppGpp.

  2008cited by this paper
• Cell-cycle-dependent spatial sequestration of the DnaA replication initiator protein in Bacillus subtilis.

  2008influential reference
• Incorporating genome-wide DNA sequence information into a dynamic whole-cell model of Escherichia coli: application to DNA replication.

  2008cited by this paper
• AAA+ ATPases in the Initiation of DNA Replication

  2008cited by this paper
• Hda Monomerization by ADP Binding Promotes Replicase Clamp-mediated DnaA-ATP Hydrolysis*

  2008influential reference
• The functional analysis of YabA, which interacts with DnaA and regulates initiation of chromosome replication in Bacillus subtils.

  2008cited by this paper
• Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA.

  2008cited by this paper
• SpoT Regulates DnaA Stability and Initiation of DNA Replication in Carbon-Starved Caulobacter crescentus

  2008cited by this paper
• Regulation of the initiation of chromosomal replication in bacteria.

  2007cited by this paper
• Structural similarity between the DnaA‐binding proteins HobA (HP1230) from Helicobacter pylori and DiaA from Escherichia coli

  2007cited by this paper
• Genetic Evidence for a Link Between Glycolysis and DNA Replication

  2007cited by this paper
• HobA – a novel protein involved in initiation of chromosomal replication in Helicobacter pylori

  2007cited by this paper
• Nutritional control of elongation of DNA replication by (p)ppGpp.

  2007influential reference
• Sequence characteristics required for cooperative binding and efficient in vivo titration of the replication initiator protein DnaA in E. coli.

  2007influential reference
• Organization of sister origins and replisomes during multifork DNA replication in Escherichia coli

  2007cited by this paper
• Structure and Function of DnaA N-terminal Domains

  2007cited by this paper
• The interaction of DiaA and DnaA regulates the replication cycle in E. coli by directly promoting ATP DnaA-specific initiation complexes.

  2007influential reference
• Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling

  2006influential reference
• The chromosome partitioning proteins Soj (ParA) and Spo0J (ParB) contribute to accurate chromosome partitioning, separation of replicated sister origins, and regulation of replication initiation in Bacillus subtilis

  2006cited by this paper
• A dynamically localized protease complex and a polar specificity factor control a cell cycle master regulator.

  2006cited by this paper
• The replication clamp-loading machine at work in the three domains of life

  2006cited by this paper
• SeqA blocking of DnaA-oriC interactions ensures staged assembly of the E. coli pre-RC.

  2006cited by this paper
• Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus subtilis

  2006cited by this paper
• Cluster of DnaA Boxes Involved in Regulation of Streptomyces Chromosome Replication: from In Silico to In Vivo Studies

  2006cited by this paper
• Specific N‐terminal interactions of the Escherichia coli SeqA protein are required to form multimers that restrain negative supercoils and form foci

  2005cited by this paper
• Crystal structure of a SeqA–N filament: implications for DNA replication and chromosome organization

  2005cited by this paper
• Coordinated Replication and Sequestration of oriC and dnaA Are Required for Maintaining Controlled Once-per-Cell-Cycle Initiation in Escherichia coli

  2005cited by this paper
• An oriC-like distribution of GATC sites mediates full sequestration of non-origin sequences in Escherichia coli.

  2005influential reference
• Dimeric configuration of SeqA protein bound to a pair of hemi-methylated GATC sequences

  2005cited by this paper
• Formation of an ATP-DnaA-specific Initiation Complex Requires DnaA Arginine 285, a Conserved Motif in the AAA+ Protein Family*

  2005cited by this paper
• Hda inactivation of DnaA is the predominant mechanism preventing hyperinitiation of Escherichia coli DNA replication

  2005cited by this paper
• Deletion of the datA Site Does Not Affect Once-per-Cell-Cycle Timing but Induces Rifampin-Resistant Replication

  2005cited by this paper
• Protein Associations in DnaA-ATP Hydrolysis Mediated by the Hda-Replicase Clamp Complex*

  2005influential reference
• Robust control of initiation of prokaryotic chromosome replication: essential considerations for a minimal cell.

  2004cited by this paper
• Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP.

  2004cited by this paper
• Molecular mechanism of DNA replication‐coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp‐loaded DNA and the sliding clamp‐Hda complex

  2004cited by this paper
• Sequential binding of SeqA protein to nascent DNA segments at replication forks in synchronized cultures of Escherichia coli

  2004cited by this paper
• Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein.

  2004cited by this paper
• Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases.

  2004cited by this paper
• Regulated degradation of chromosome replication proteins DnaA and CtrA in Caulobacter crescentus

  2004cited by this paper
• Interaction of the sliding clamp beta-subunit and Hda, a DnaA-related protein.

  2004cited by this paper
• Replication fork and SeqA focus distributions in Escherichia coli suggest a replication hyperstructure dependent on nucleotide metabolism

  2004influential reference
• DiaA, a Novel DnaA-binding Protein, Ensures the Timely Initiation of Escherichia coli Chromosome Replication*

  2004cited by this paper
• Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding

  2004cited by this paper
• Interaction of the Sliding Clamp β-Subunit and Hda, a DnaA-Related Protein

  2004cited by this paper
• Overproduction of DnaA protein stimulates initiation of chromosome and minichromosome replication in Escherichia coli

  2004cited by this paper
• Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA

  2004cited by this paper
• Excess SeqA prolongs sequestration of oriC and delays nucleoid segregation and cell division

  2003cited by this paper
• Coupling the initiation of chromosome replication to cell size in Escherichia coli.

  2003cited by this paper
• Titration of the Escherichia coli DnaA protein to excess datA sites causes destabilization of replication forks, delayed replication initiation and delayed cell division

  2003cited by this paper
• Structural basis of replication origin recognition by the DnaA protein.

  2003cited by this paper
• Increasing the Ratio of Soj to Spo0J Promotes Replication Initiation in Bacillus subtilis

  2003cited by this paper
• Stable co‐existence of separate replicons in Escherichia coli is dependent on once‐per‐cell‐cycle initiation

  2003cited by this paper
• Transcriptional control for initiation of chromosomal replication in Escherichia coli: fluctuation of the level of origin transcription ensures timely initiation

  2003cited by this paper
• IHF and HU stimulate assembly of pre‐replication complexes at Escherichia coli oriC by two different mechanisms

  2002cited by this paper
• Control of chromosome replication in caulobacter crescentus.

  2002cited by this paper

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• Concise Overview of Methodologies Employed in the Study of Bacterial DNA Replication

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• Conflicts between the DNA replication and repair machineries promote cell death in Gram-positive bacteria

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• DNA replication initiation timing is important for maintaining genome integrity

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• Inhibition of Replication Fork Formation and Progression: Targeting the Replication Initiation and Primosomal Proteins

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