Differential Cofactor Requirements for Histone Eviction from Two Nucleosomes at the Yeast PHO84 Promoter Are Determined by Intrinsic Nucleosome Stability

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Molecular and Cellular Biology

• Publication date

  2009-03-23

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1128/MCB.01054-08PMID 19307305PMCID PMC2682004
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.

  2008influential reference
• Acetylation in the globular core of histone H3 on lysine-56 promotes chromatin disassembly during transcriptional activation

  2008cited by this paper
• Chromatin decouples promoter threshold from dynamic range

  2008cited by this paper
• Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75

  2008cited by this paper
• Histone chaperones in nucleosome eviction and histone exchange.

  2008cited by this paper
• Comprehensive profiling of histone modifications using a label-free approach and its applications in determining structure-function relationships.

  2008influential reference
• Chromatin remodelling at promoters suppresses antisense transcription

  2007cited by this paper
• Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome

  2007cited by this paper
• Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes.

  2007influential reference
• Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map

  2007cited by this paper
• The complex language of chromatin regulation during transcription

  2007cited by this paper
• Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion

  2007influential reference
• A high-resolution atlas of nucleosome occupancy in yeast

  2007cited by this paper
• Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

  2007cited by this paper
• Dynamics of Replication-Independent Histone Turnover in Budding Yeast

  2007cited by this paper
• Redundancy of Chromatin Remodeling Pathways for the Induction of the Yeast PHO5 Promoter in Vivo*

  2007influential reference
• Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

  2007cited by this paper
• Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3

  2007cited by this paper
• Rtt109 Acetylates Histone H3 Lysine 56 and Functions in DNA Replication

  2007influential reference
• The role of chromatin during transcription.

  2007cited by this paper
• Transcription factor access to promoter elements

  2007cited by this paper
• Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication.

  2007cited by this paper
• Chromatin modifications and their function.

  2007cited by this paper
• Yeast Rtt109 Promotes Genome Stability by Acetylating Histone H3 on Lysine 56

  2007cited by this paper
• SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo

  2006cited by this paper
• SWI/SNF Displaces SAGA-Acetylated Nucleosomes

  2006cited by this paper
• A large-scale full-length cDNA analysis to explore the budding yeast transcriptome

  2006cited by this paper
• The Histone Chaperone Asf1 Increases the Rate of Histone Eviction at the Yeast PHO5 and PHO8 Promoters*

  2006influential reference
• Ubp8p, a Histone Deubiquitinase Whose Association with SAGA Is Mediated by Sgf11p, Differentially Regulates Lysine 4 Methylation of Histone H3 In Vivo

  2006cited by this paper
• Nucleosome positions predicted through comparative genomics

  2006cited by this paper
• Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.

  2006cited by this paper
• Rtt109 Is Required for Proper H3K56 Acetylation

  2006influential reference
• A genomic code for nucleosome positioning

  2006cited by this paper
• Nucleosome Stability at the Yeast PHO5 and PHO8 Promoters Correlates with Differential Cofactor Requirements for Chromatin Opening

  2005cited by this paper
• Genome-Scale Identification of Nucleosome Positions in S. cerevisiae

  2005cited by this paper
• An intracellular phosphate buffer filters transient fluctuations in extracellular phosphate levels.

  2005cited by this paper
• Promoter Occupancy Is a Major Determinant of Chromatin Remodeling Enzyme Requirements

  2005influential reference
• Effectors of Lysine 4 Methylation of Histone H3 in Saccharomyces cerevisiae Are Negative Regulators of PHO5 and GAL1-10*

  2004cited by this paper
• Identification and distinct regulation of yeast TATA box-containing genes.

  2004cited by this paper
• Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex.

  2004cited by this paper
• Global nucleosome occupancy in yeast

  2004cited by this paper
• Anatomy of a hypersensitive site.

  2004cited by this paper
• Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

  2004influential reference
• ATP-dependent nucleosome remodelling: factors and functions

  2004cited by this paper
• In Vitro Assembly of the Characteristic Chromatin Organization at the Yeast PHO5 Promoter by a Replication-independent Extract System*

  2004cited by this paper
• Analysis of a Mutant Histone H3 That Perturbs the Association of Swi/Snf with Chromatin

  2004influential reference
• Evidence for nucleosome depletion at active regulatory regions genome-wide

  2004cited by this paper
• Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

  2003cited by this paper
• Polyphosphate Loss Promotes SNF/SWI- and Gcn5-Dependent Mitotic Induction of PHO5

  2003cited by this paper
• Partially Phosphorylated Pho4 Activates Transcription of a Subset of Phosphate-Responsive Genes

  2003cited by this paper
• Nucleosomes unfold completely at a transcriptionally active promoter.

  2003cited by this paper
• Regulation of Chromatin Remodeling by Inositol Polyphosphates

  2002influential reference
• ATP-dependent nucleosome remodeling.

  2002cited by this paper
• The in vivo functions of ATP-dependent chromatin-remodelling factors

  2002cited by this paper
• Poly(dA-dT) Promoter Elements Increase the Equilibrium Accessibility of Nucleosomal DNA Target Sites

  2001cited by this paper
• Increasing the rate of chromatin remodeling and gene activation—a novel role for the histone acetyltransferase Gcn5

  2001influential reference
• Multi-site phosphorylation of Pho4 by the cyclin-CDK Pho80-Pho85 is semi-processive with site preference.

  2001cited by this paper
• Redundant roles for the TFIID and SAGA complexes in global transcription

  2000cited by this paper
• Transcriptional Regulation of the Yeast PHO8 Promoter in Comparison to the Coregulated PHO5 Promoter*

  2000cited by this paper
• A chromatin remodelling complex involved in transcription and DNA processing

  2000cited by this paper
• Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.

  1999cited by this paper
• Chromatin remodelling at the PHO8 promoter requires SWI–SNF and SAGA at a step subsequent to activator binding

  1999cited by this paper
• Cooperative Pho2-Pho4 Interactions at thePHO5 Promoter Are Critical for Binding of Pho4 to UASp1 and for Efficient Transactivation by Pho4 at UASp2

  1998cited by this paper
• Effects of Sin− versions of histone H4 on yeast chromatin structure and function

  1997cited by this paper
• The phosphatase system in Saccharomyces cerevisiae.

  1997cited by this paper
• Essential functional interactions of SAGA, a Saccharomyces cerevisiae complex of Spt, Ada, and Gcn5 proteins, with the Snf/Swi and Srb/mediator complexes.

  1997cited by this paper
• Crystal structure of the nucleosome core particle at 2.8 Å resolution

  1997cited by this paper
• Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast.

  1997cited by this paper
• SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast.

  1997cited by this paper
• Functional analysis of the DNA-stimulated ATPase domain of yeast SWI2/SNF2.

  1996cited by this paper
• Structure and distribution of specific cis-elements for transcriptional regulation of PH084 in Saccharomyces cerevisiae

  1995cited by this paper
• Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

  1995cited by this paper
• [8] In Vivo Analysis of nucleosome structure and transcription factor binding in Saccharomyces cerevisiae

  1995cited by this paper
• Phosphorylation of the transcription factor PHO4 by a cyclin-CDK complex, PHO80-PHO85.

  1994cited by this paper
• The transactivation domain of Pho4 is required for nucleosome disruption at the PHO5 promoter.

  1994cited by this paper
• A nucleosome precludes binding of the transcription factor Pho4 in vivo to a critical target site in the PHO5 promoter.

  1994cited by this paper
• Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation.

  1993cited by this paper
• Activation of the weakly regulated PHO8 promoter in S. cerevisiae: chromatin transition and binding sites for the positive regulatory protein PHO4.

  1992cited by this paper
• The PHO84 gene of Saccharomyces cerevisiae encodes an inorganic phosphate transporter

  1991cited by this paper
• Role of trans‐activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.

  1990cited by this paper
• The "megaprimer" method of site-directed mutagenesis.

  1990cited by this paper
• Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

  1986influential reference
• A deletion that includes the signal peptidase cleavage site impairs processing, glycosylation, and secretion of cell surface yeast acid phosphatase

  1984cited by this paper
• Nucleosome reconstitution on plasmid‐inserted poly(dA) . poly(dT).

  1982cited by this paper
• A new procedure for purifying histone pairs H2A + H2B and H3 + H4 from chromatin using hydroxylapatite.

  1979cited by this paper
• Restriction nucleases as probes of chromatin structure

  1975cited by this paper
• Chromatin Modifications and Their Function

  year unknowncited by this paper

• Optogenetic Control of Phosphate-Responsive Genes Using Single-Component Fusion Proteins in Saccharomyces cerevisiae.

  2024cites this paper
• Optogenetic control of phosphate-responsive genes using single component fusion proteins in Saccharomyces cerevisiae

  2024cites this paper
• Nucleosome Remodeling at the Yeast PHO8 and PHO84 Promoters without the Putatively Essential SWI/SNF Remodeler

  2023influential citation
• The Active Rather than Intrinsic Mechanism of Nucleosome Depletion by Poly(dA:dT) Tracts

  2021cites this paper
• The Active Mechanism of Nucleosome Depletion by Poly(dA:dT) Tracts In Vivo

  2021cites this paper
• Effective dynamics of nucleosome configurations at the yeast PHO5 promoter

  2020cites this paper
• Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression

  2018cites this paper
• The Determinants of Nucleosome Patterns and the Impact of Phosphate Starvation on Nucleosome Patterns and Gene Expression in Rice

  2018cites this paper
• Two Distinct Regulatory Mechanisms of Transcriptional Initiation in Response to Nutrient Signaling

  2017cites this paper
• Emerging Trends in Epigenetic Regulation of Nutrient Deficiency Response in Plants

  2016cites this paper
• The yeast PHO promoters as paradigm for transcriptional regulation by chromatin remodelling: current state of the art.

  2014cites this paper
• The yeast PHO5 promoter: from single locus to systems biology of a paradigm for gene regulation through chromatin

  2014influential citation
• Mediator, TATA-binding Protein, and RNA Polymerase II Contribute to Low Histone Occupancy at Active Gene Promoters in Yeast*

  2014cites this paper
• Genome-Wide Association of Mediator and RNA Polymerase II in Wild-Type and Mediator Mutant Yeast

  2014cites this paper
• The RSC chromatin remodeling complex has a crucial role in the complete remodeler set for yeast PHO5 promoter opening

  2014cites this paper
• Bimodal expression of PHO84 is modulated by early termination of antisense transcription

  2013cites this paper
• Genome-wide identification of nucleosome positioning determinants in schizosaccharomyces pombe

  2013cites this paper
• Characterisation of the wheat (triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

  2013cites this paper
• In vitro reconstitution of in vivo-like nucleosome positioning on yeast DNA.

  2012cites this paper
• Linking genome to epigenome

  2012cites this paper
• Chromatin and Transcription in Yeast

  2012cites this paper
• Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.

  2012cites this paper
• Genome-wide in vitro reconstitution of yeast chromatin with in vivo-like nucleosome positioning.

  2012cites this paper
• Phosphate disruption and metal toxicity in Saccharomyces cerevisiae: effects of RAD23 and the histone chaperone HPC2.

  2012cites this paper
• The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes

  2011cites this paper
• A hitchhiker's guide to the Arabidopsis ferrome.

  2011cites this paper
• Gcn5 facilitates Pol II progression, rather than recruitment to nucleosome-depleted stress promoters, in Schizosaccharomyces pombe

  2011cites this paper
• Datamining of genome-wide nucleosome data generated by next-generation sequencing

  2011cites this paper
• Nuclear roles and regulation of chromatin structure by the stress‐dependent MAP kinase Sty1 of Schizosaccharomyces pombe

  2011cites this paper
• Phosphorus as a Critical Macronutrient

  2011cites this paper
• Quantitative Trait Loci, Epigenetics, Sugars, and MicroRNAs: Quaternaries in Phosphate Acquisition and Use

  2010cites this paper
• The DNA Sequence-dependence of Nucleosome Positioning in vivo and in vitro

  2010cites this paper
• The INO80 ATP-Dependent Chromatin Remodeling Complex Is a Nucleosome Spacing Factor

  2010cites this paper
• Comparison of Genome-Wide Nucleosome Positioning Mechanisms in Schizosaccharomyces pombe and Saccharomyces cerevisiae

  2010cites this paper
• Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae

  2010cites this paper
• Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not

  2010cites this paper
• Yeast PHO Genes: An Excellent Model for Elucidation of Chromatin-Remodelling Mechanisms

  2010influential citation
• The effect of phosphate accumulation on metal ion homeostasis in Saccharomyces cerevisiae

  2010cites this paper
• A study of chromatin dynamics during transcription by fluorescence light microscopy

  2010cites this paper
• In Vitro Reconstitution of PHO5 Promoter Chromatin Remodeling Points to a Role for Activator-Nucleosome Competition In Vivo

  2010cites this paper
• Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator1[OA]

  2009cites this paper
• Current awareness on yeast

  2009cites this paper
• Investigations on the physiology and molecular basis of polyphosphate hyper- and hypo-accumulation in Saccharomyces cerevisiae

  2009cites this paper
• Histone H 2 A . Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator 1 [ OA ]

  2009cites this paper