Structural and functional requirements for the chromatin transition at the PHO5 promoter in Saccharomyces cerevisiae upon PHO5 activation.

No abstract is available for this paper.

• Publication year

  1993

• Venue

  Journal of Molecular Biology

• Publication date

  1993-06-05

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1006/JMBI.1993.1317PMID 8515443
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A positive role for histone acetylation in transcription factor access to nucleosomal DNA.

  1993cited by this paper
• Chromatin as an essential part of the transcriptional mechanim

  1992cited by this paper
• Histones H2A/H2B inhibit the interaction of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome.

  1992cited by this paper
• Nucleosome disruption at the yeast PHO5 promoter upon PHO5 induction occurs in the absence of DNA replication.

  1992cited by this paper
• Nucleosome positioning.

  1992cited by this paper
• Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae.

  1991cited by this paper
• A functional role for nucleosomes in the repression of a yeast promoter.

  1991cited by this paper
• Irresistible force meets immovable object: transcription and the nucleosome.

  1991cited by this paper
• Histone function in transcription.

  1990cited by this paper
• Role of trans‐activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.

  1990cited by this paper
• Activators and targets

  1990cited by this paper
• Nucleosomes: regulators of transcription.

  1990cited by this paper
• The two positively acting regulatory proteins PHO2 and PHO4 physically interact with PHO5 upstream activation regions

  1989cited by this paper
• Nuclease hypersensitive sites in chromatin.

  1988cited by this paper
• Statistical positioning of nucleosomes by specific protein-binding to an upstream activating sequence in yeast.

  1988cited by this paper
• The formation and function of DNase I hypersensitive sites in the process of gene activation.

  1988cited by this paper
• Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism.

  1988cited by this paper
• The yeast PHO5 promoter: phosphate-control elements and sequences mediating mRNA start-site selection.

  1987cited by this paper
• Protein-DNA interactions and nuclease-sensitive regions determine nucleosome positions on yeast plasmid chromatin.

  1986cited by this paper
• DNA engineering shows that nucleosome phasing on the African green monkey alpha-satellite is the result of multiple additive histone-DNA interactions.

  1986cited by this paper
• Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

  1986cited by this paper
• Nuclease hypersensitive regions with adjacent positioned nucleosomes mark the gene boundaries of the PHO5/PHO3 locus in yeast.

  1986cited by this paper
• Reconstitution experiments show that sequence-specific histone-DNA interactions are the basis for nucleosome phasing on mouse satellite DNA.

  1985cited by this paper
• Transformation of intact yeast cells treated with alkali cations.

  1984cited by this paper
• Role of DNA replication in the repression of silent mating type loci in yeast

  1984cited by this paper
• Regulation of mating-type information in yeast. Negative control requiring sequences both 5' and 3' to the regulated region.

  1984cited by this paper
• Centromeric DNA from chromosome VI in Saccharomyces cerevisiae strains.

  1982cited by this paper
• Two yeast acid phosphatase structural genes are the result of a tandem duplication and show different degrees of homology in their promoter and coding sequences.

  1982cited by this paper
• Sequence specific cleavage of DNA by micrococcal nuclease.

  1981cited by this paper
• High sequence specificity of micrococcal nuclease.

  1981cited by this paper
• The location of nucleosomes in chromatin: specific or statistical?

  1981cited by this paper
• Sequence of a yeast DNA fragment containing a chromosomal replicator and the TRP1 gene.

  1980cited by this paper

• Optogenetic Control of Phosphate-Responsive Genes Using Single-Component Fusion Proteins in Saccharomyces cerevisiae.

  2024cites this paper
• Optogenetic control of phosphate-responsive genes using single component fusion proteins in Saccharomyces cerevisiae

  2024cites this paper
• Nucleosome Remodeling at the Yeast PHO8 and PHO84 Promoters without the Putatively Essential SWI/SNF Remodeler

  2023cites this paper
• Multidimensional characterization of inducible promoters and a highly light-sensitive LOV-transcription factor

  2023cites this paper
• Effective dynamics of nucleosome configurations at the yeast PHO5 promoter

  2020cites this paper
• Multidimensional single-cell benchmarking of inducible promoters for precise dynamic control in budding yeast

  2020cites this paper
• The Determinants of Nucleosome Patterns and the Impact of Phosphate Starvation on Nucleosome Patterns and Gene Expression in Rice

  2018cites this paper
• Dissection of nucleosome positioning mechanisms by genome-wide in vitro reconstitution

  2017cites this paper
• Chromatin structure and gene expression in Saccharomyces cerevisiae quiescence

  2017cites this paper
• Nucleosome positioning in yeasts: methods, maps, and mechanisms

  2015cites this paper
• The RSC chromatin remodeling complex has a crucial role in the complete remodeler set for yeast PHO5 promoter opening

  2014cites this paper
• The yeast PHO promoters as paradigm for transcriptional regulation by chromatin remodelling: current state of the art.

  2014cites this paper
• The yeast PHO5 promoter: from single locus to systems biology of a paradigm for gene regulation through chromatin

  2014influential citation
• signalling pathway. promoter to activation of the cyclic AMP response of the mouse mammary tumor virus Nucleoprotein structure influences the

  2013cites this paper
• Mechanisms of Heterochromatin Silencing in Saccharomyces cerevisiae

  2013cites this paper
• Genome-wide identification of nucleosome positioning determinants in schizosaccharomyces pombe

  2013cites this paper
• Adjusting Phenotypes by Noise Control

  2012cites this paper
• Chromatin and Transcription in Yeast

  2012cites this paper
• Histone H3 Lysine 4 Hypermethylation Prevents Aberrant Nucleosome Remodeling at the PHO5 Promoter

  2011cites this paper
• Stochastic Nature in Cellular Processes

  2011cites this paper
• Nucleosome Positioning in Saccharomyces cerevisiae

  2011cites this paper
• Occlusion of Regulatory Sequences by Promoter Nucleosomes In Vivo

  2011cites this paper
• In Vivo Role for the Chromatin-remodeling Enzyme SWI/SNF in the Removal of Promoter Nucleosomes by Disassembly Rather Than Sliding

  2011cites this paper
• Yeast PHO Genes: An Excellent Model for Elucidation of Chromatin-Remodelling Mechanisms

  2010cites this paper
• In Vitro Reconstitution of PHO5 Promoter Chromatin Remodeling Points to a Role for Activator-Nucleosome Competition In Vivo

  2010influential citation
• Quantitative analysis of the transcription control mechanism

  2010cites this paper
• Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model

  2009cites this paper
• Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae.

  2009cites this paper
• Epigenetic inheritance of an inducibly nucleosome-depleted promoter and its associated transcriptional state in the apparent absence of transcriptional activators

  2009cites this paper
• Differential Cofactor Requirements for Histone Eviction from Two Nucleosomes at the Yeast PHO84 Promoter Are Determined by Intrinsic Nucleosome Stability

  2009cites this paper
• A quantitative study of nucleosome free regions in yeast by segmental semi-Markov Model using tiling microarrays

  2008cites this paper
• Meiotic Chromatin: The Substrate for Recombination Initiation

  2008cites this paper
• Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

  2008cites this paper
• Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation

  2007influential citation
• Genome-Wide Chromosomal Targets of Oncogenic Transcription Factors

  2007cites this paper
• A role for noncoding transcription in activation of the yeast PHO5 gene

  2007cites this paper
• Mechanism of chromatin reassembly at the yeast PHO5 promoter upon repression

  2007cites this paper
• Redundancy of Chromatin Remodeling Pathways for the Induction of the Yeast PHO5 Promoter in Vivo*

  2007cites this paper
• The Histone Chaperone Asf1 Increases the Rate of Histone Eviction at the Yeast PHO5 and PHO8 Promoters*

  2006cites this paper
• Award Number: W81XWH-04-1-0472 TITLE: Genome-Wide Chromosomal Targets of Oncogenic Transcription Factors PRINCIPAL INVESTIGATOR:

  2006cites this paper
• In Vitro Studies of Nucleosome Positioning and Stability at the PHO5 and PHO8 Promoters in Saccharomyces cerevisiae

  2006cites this paper
• Chromatin dynamics at the Saccharomyces cerevisiae PHO5 promoter

  2006influential citation
• A Role for Gcn5-Mediated Global Histone Acetylation in Transcriptional Regulation

  2006cites this paper
• Nucleosome Stability at the Yeast PHO5 and PHO8 Promoters Correlates with Differential Cofactor Requirements for Chromatin Opening

  2005cites this paper
• Control of Stochasticity in Eukaryotic Gene Expression

  2004cites this paper
• Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

  2004influential citation
• Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

  2004cites this paper
• In Vitro Assembly of the Characteristic Chromatin Organization at the Yeast PHO5 Promoter by a Replication-independent Extract System*

  2004cites this paper
• Evidence for Histone Eviction in trans upon Induction of the Yeast PHO5 Promoter

  2004cites this paper
• Chromatin Rearrangements in the prnD-prnB Bidirectional Promoter: Dependence on Transcription Factors

  2004cites this paper
• Precise nucleosome positioning and the TATA box dictate requirements for the histone H4 tail and the bromodomain factor Bdf1.

  2004cites this paper
• The Onset of Carbon Catabolic Repression and Interplay Between Specific Induction and Carbon Catabolite Repression in Aspergillus nidulans

  2004cites this paper
• A major role for the TATA box in recruitment of chromatin modifying complexes to a globin gene promoter

  2003cites this paper
• SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery.

  2003cites this paper
• Multiple Mechanistically Distinct Functions of SAGA at the PHO5 Promoter

  2003cites this paper
• Getting into chromatin: how do transcription factors get past the histones?

  2003cites this paper
• Regulation of V(D)J recombination by nucleosome positioning at recombination signal sequences

  2003cites this paper
• Einfluß der Chromatinumgebung auf die Genregulation durch den Transkriptionsfaktor Sin4 aus der Hefe Saccharomyces cerevisiae

  2003cites this paper
• Evidence implicating Ku antigen as a structural factor in RNA polymerase II-mediated transcription.

  2003cites this paper
• Nucleosomes unfold completely at a transcriptionally active promoter.

  2003cites this paper
• Reconstitution of Nucleosome Positioning, Remodeling, Histone Acetylation, and Transcriptional Activation on the PHO5Promoter*

  2002cites this paper
• Cloning and characterization of hELD/OSA1, a novel BRG1 interacting protein.

  2002cites this paper
• Recruitment of Gcn5-containing Complexes during c-Myc-dependent Gene Activation

  2002cites this paper
• Rapid recombination among transfected plasmids, chimeric episome formation and trans gene expression in Plasmodium falciparum.

  2001cites this paper
• Transcription and chromatin converge: lessons from yeast genetics.

  2001cites this paper
• Increasing the rate of chromatin remodeling and gene activation—a novel role for the histone acetyltransferase Gcn5

  2001cites this paper
• Preferential Accessibility of the Yeast his3 Promoter Is Determined by a General Property of the DNA Sequence, Not by Specific Elements

  2000cites this paper
• Active intracellular domain of Notch enhances transcriptional activation of CCAAT/enhancer binding protein beta on a rat pregnancy-specific glycoprotein gene.

  2000cites this paper
• Helix-Loop-Helix Proteins: Regulators of Transcription in Eucaryotic Organisms

  2000cites this paper
• Acclimation of Chlamydomonas reinhardtii to its nutrient environment.

  2000cites this paper
• Transcription regulation in eukaryotes

  1999cites this paper
• Structural and Functional Cross-Talk between a Distant Enhancer and the ɛ-Globin Gene Promoter Shows Interdependence of the Two Elements in Chromatin

  1999influential citation
• An In Vitro System Recapitulates Chromatin Remodeling at the PHO5 Promoter

  1999cites this paper
• p300 stimulates transcription instigated by ligand‐bound thyroid hormone receptor at a step subsequent to chromatin disruption

  1999cites this paper
• Long-distance chromatin mechanisms controlling tissue-specific gene locus activation.

  1999cites this paper
• The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter

  1999cites this paper
• Cooperative Pho2-Pho4 Interactions at thePHO5 Promoter Are Critical for Binding of Pho4 to UASp1 and for Efficient Transactivation by Pho4 at UASp2

  1998cites this paper
• Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase

  1998cites this paper
• Recruitment of the RNA polymerase II holoenzyme and its implications in gene regulation.

  1998cites this paper
• Nucleosome structure of the yeast CHA1 promoter: analysis of activation‐dependent chromatin remodeling of an RNA‐polymerase‐II‐transcribed gene in TBP and RNA pol II mutants defective in vivo in response to acidic activators

  1998cites this paper
• Requirements for Chromatin Modulation and Transcription Activation by the Pho4 Acidic Activation Domain

  1998cites this paper
• Specificity of ATP-dependent chromatin remodeling at the yeast PHO5 promoter.

  1998cites this paper
• Critical residues for histone acetylation by Gcn5, functioning in Ada and SAGA complexes, are also required for transcriptional function in vivo.

  1998cites this paper
• Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.

  1998cites this paper
• Nucleosome Transactions on the Promoters of the YeastGAL and PHO Genes*

  1997cites this paper
• Glucocorticoid receptor-glucocorticoid response element binding stimulates nucleosome disruption by the SWI/SNF complex

  1997cites this paper
• RNA polymerase II holoenzyme recruitment is sufficient to remodel chromatin at the yeast PHO5 promoter.

  1997cites this paper
• Transcriptional Regulation in a Chromatin Environment

  1997cites this paper
• Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: a mechanism for lineage determination in myogenesis.

  1997cites this paper
• The developmental activation of the chicken lysozyme locus in transgenic mice requires the interaction of a subset of enhancer elements with the promoter.

  1997cites this paper
• Factors Affecting Saccharomyces cerevisiae ADH2Chromatin Remodeling and Transcription*

  1997cites this paper
• The role of chromatin in transcriptional regulation.

  1997cites this paper
• Chromatin Remodeling by Transcriptional Activation Domains in a Yeast Episome*

  1997cites this paper
• Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast.

  1997cites this paper
• Synergism between hypersensitive sites confers long-range gene activation by the beta-globin locus control region.

  1997cites this paper
• Histone acetyltransferases regulate HIV-1 enhancer activity in vitro.

  1997cites this paper
• Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone‐regulated chromatin disruption is not sufficient for transcriptional activation

  1997cites this paper
• Chromatin remodeling during Saccharomyces cerevisiae ADH2 gene activation

  1996cites this paper
• Genomic position effects lead to an inefficient reorganization of nucleosomes in the 5'-regulatory region of the chicken lysozyme locus in transgenic mice.

  1996cites this paper
• Prerequisites for tissue specific and position independent expression of a gene locus in transgenic mice

  1996cites this paper