Rho-dependent termination and ATPases in transcript termination.

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Biochimica et Biophysica Acta

• Publication date

  2002-09-13

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/S0167-4781(02)00456-6PMID 12213656
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A general model for nucleic acid helicases and their "coupling" within macromolecular machines.

  2001cited by this paper
• Identification of an RNA-binding Site in the ATP Binding Domain of Escherichia coli Rho by H2O2/Fe-EDTA Cleavage Protection Studies*

  2001cited by this paper
• Transcription Factor Rho Does Not Require a Free End to Act as an RNA-DNA Helicase on an RNA*

  2001cited by this paper
• Escherichia coli transcription termination factor Rho binds and hydrolyzes ATP using a single class of three sites.

  2001cited by this paper
• Mutational changes of conserved residues in the Q-loop region of transcription factor Rho greatly reduce secondary site RNA-binding.

  2001cited by this paper
• rho Is Not Essential for Viability or Virulence inStaphylococcus aureus

  2001cited by this paper
• RNA Passes through the Hole of the Protein Hexamer in the Complex with the Escherichia coli Rho Factor*

  2001cited by this paper
• Regulation of rho-dependent transcription termination by NusG is specific to the Escherichia coli elongation complex.

  2000cited by this paper
• A structural model of transcription elongation.

  2000cited by this paper
• Three-dimensional reconstruction of transcription termination factor rho: orientation of the N-terminal domain and visualization of an RNA-binding site.

  2000cited by this paper
• Structure and function of hexameric helicases.

  2000cited by this paper
• Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals.

  2000cited by this paper
• A Structural Model of Transcription Elongation

  2000cited by this paper
• ATP and other nucleotides stabilize the Rho-mRNA complex.

  1999cited by this paper
• Activation of Rho-dependent Transcription Termination by NusG

  1999cited by this paper
• Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis

  1999cited by this paper
• Mechanism of intrinsic transcription termination and antitermination.

  1999cited by this paper
• The structural basis for terminator recognition by the Rho transcription termination factor.

  1999cited by this paper
• The Mechanism of ATP Hydrolysis at the Noncatalytic Sites of the Transcription Termination Factor Rho*

  1999cited by this paper
• The mechanism of intrinsic transcription termination.

  1999cited by this paper
• Transcription Termination Factor Rho Contains Three Noncatalytic Nucleotide Binding Sites*

  1999cited by this paper
• A Human RNA Polymerase II Transcription Termination Factor Is a SWI2/SNF2 Family Member*

  1998cited by this paper
• Complex of Escherichia coli primary replicative helicase DnaB protein with a replication fork: recognition and structure.

  1998cited by this paper
• Information Processing by RNA Polymerase: Recognition of Regulatory Signals during RNA Chain Elongation

  1998cited by this paper
• The C-terminal domain of the alpha subunit of Escherichia coli RNA polymerase is required for efficient rho-dependent transcription termination.

  1998cited by this paper
• Unusual Nucleic Acid Binding Properties of Factor 2, an RNA Polymerase II Transcript Release Factor*

  1998cited by this paper
• rut Sites in the Nascent Transcript Mediate Rho-dependent Transcription Termination in Vivo*

  1998cited by this paper
• Crystal structure of the RNA-binding domain from transcription termination factor rho

  1998cited by this paper
• Combinatorial effects of NusA and NusG on transcription elongation and Rho-dependent termination in Escherichia coli.

  1998cited by this paper
• The NMR structure of the RNA binding domain of E.coli rho factor suggests possible RNA–protein interactions

  1998cited by this paper
• Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 1. Characterization and analysis of the reaction.

  1997cited by this paper
• Kinetics of the RNA-DNA helicase activity of Escherichia coli transcription termination factor rho. 2. Processivity, ATP consumption, and RNA binding.

  1997cited by this paper
• Transcription termination factor Rho is essential for Micrococcus luteus

  1997cited by this paper
• 1H, 15N and 13C resonance assignments and secondary structure determination of the RNA-binding domain of E. coli rho protein

  1996cited by this paper
• Rho-dependent Termination of Transcription Is Governed Primarily by the Upstream Rho Utilization (rut) Sequences of a Terminator*

  1996cited by this paper
• Purification of an RNA Polymerase II Transcript Release Factor from Drosophila(*)

  1996cited by this paper
• Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases.

  1995cited by this paper
• Structural and functional dissections of transcription termination factor rho by random mutagenesis.

  1995cited by this paper
• NusG is required to overcome a kinetic limitation to Rho function at an intragenic terminator.

  1995cited by this paper
• Escherichia coli NusG protein stimulates transcription elongation rates in vivo and in vitro

  1995cited by this paper
• Transcription termination of RNA polymerase I due to a T-rich element interacting with Reb1p.

  1995cited by this paper
• The RNA-binding domain of transcription termination factor rho: isolation, characterization, and determination of sequence limits.

  1994cited by this paper
• Reduced Rho-dependent transcription termination permits NusA-independent growth of Escherichia coli.

  1994cited by this paper
• Evidence supporting a tethered tracking model for helicase activity of Escherichia coli Rho factor.

  1994cited by this paper
• Phylogenetic analysis of sequences from diverse bacteria with homology to the Escherichia coli rho gene

  1994cited by this paper
• Stability of Escherichia coli transcription complexes near an intrinsic terminator.

  1994cited by this paper
• A quaternary transcription termination complex. Reciprocal stabilization by Rho factor and NusG protein.

  1994cited by this paper
• Identification of a putative Bacillus subtilis rho gene

  1993cited by this paper
• Escherichia coli transcription termination factor rho. II. Binding of oligonucleotide cofactors.

  1993cited by this paper
• Transcription termination factor rho: the site of bicyclomycin inhibition in Escherichia coli.

  1993cited by this paper
• Identification of a putative Bacillus subtilis rho gene

  1993cited by this paper
• Dissection of the his leader pause site by base substitution reveals a multipartite signal that includes a pause RNA hairpin.

  1993cited by this paper
• Elongation factor NusG interacts with termination factor rho to regulate termination and antitermination of transcription.

  1993cited by this paper
• A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho.

  1993cited by this paper
• NusG, a new Escherichia coli elongation factor involved in transcriptional antitermination by the N protein of phage lambda.

  1992cited by this paper
• Functional interactions of ligand cofactors with Escherichia coli transcription termination factor rho. I. Binding of ATP

  1992cited by this paper
• Functional interactions of ligand cofactors with Escherichia coli transcription termination factor rho. II. Binding of RNA

  1992cited by this paper
• Physical properties of the Escherichia coli transcription termination factor rho. 1. Association states and geometry of the rho hexamer.

  1992cited by this paper
• Termination efficiency at rho-dependent terminators depends on kinetic coupling between RNA polymerase and rho.

  1992cited by this paper
• Requirement for E. coli NusG protein in factor-dependent transcription termination.

  1992cited by this paper
• Assembly of transcription elongation complexes containing the N protein of phage lambda and the Escherichia coli elongation factors NusA, NusB, NusG, and S10.

  1991cited by this paper
• Analysis of the Escherichia coli nusA10(Cs) allele: relating nucleotide changes to phenotypes

  1991cited by this paper
• A consensus motif common to all Rho-dependent prokaryotic transcription terminators.

  1991cited by this paper
• Preventing the synthesis of unused transcripts by Rho factor.

  1991cited by this paper
• Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

  1990cited by this paper
• Transcription termination factor rho has three distinct structural domains.

  1990cited by this paper
• Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

  1990cited by this paper
• Structural and functional properties of the segments of lambda cro mRNA that interact with transcription termination factor Rho.

  1990cited by this paper
• Sequence and transcriptional pattern of the essential Escherichia coli secE-nusG operon

  1990cited by this paper
• How RNA polymerase II terminates transcription in higher eukaryotes.

  1989cited by this paper
• Identification and characterization of transcription termination sites in the Escherichia coli lacZ gene.

  1989cited by this paper
• Overlapping transcription and termination of the convergent ilvA and ilvY genes of Escherichia coli.

  1989cited by this paper
• Thermodynamic and enzymological characterization of the interaction between transcription termination factor rho and lambda cro mRNA.

  1989cited by this paper
• Interactions of Escherichia coli transcription termination factor rho with RNA. II. Electron microscopy and nuclease protection experiments.

  1988cited by this paper
• Nus A protein affects transcriptional pausing and termination in vitro by binding to different sites on the transcription complex.

  1988cited by this paper
• A functional mRNA polyadenylation signal is required for transcription termination by RNA polymerase II.

  1988cited by this paper
• The ATP binding site on rho protein. Affinity labeling of Lys181 by pyridoxal 5'-diphospho-5'-adenosine.

  1988cited by this paper
• Escherichia coli transcription termination protein rho has three hydrolytic sites for ATP.

  1988cited by this paper
• Interactions of Escherichia coli transcription termination factor rho with RNA. I. Binding stoichiometries and free energies.

  1988cited by this paper
• The E. coli Rho protein: an ATPase that terminates transcription.

  1988cited by this paper
• Transcription termination factor rho is an RNA-DNA helicase.

  1987cited by this paper
• Sequence elements essential for rho-dependent transcription termination at lambda tR1.

  1987cited by this paper
• Mapping and characterization of transcriptional pause sites in the early genetic region of bacteriophage T7.

  1987cited by this paper
• Transcription termination at λ tR1 is mediated by interaction of Rho with specific single-stranded domains near the 3' end of cro mRNA

  1986cited by this paper
• Interaction of rho factor with bacteriophage lambda cro gene transcripts.

  1985cited by this paper
• RNA sequence and secondary structure requirements for rho-dependent transcription termination.

  1985cited by this paper
• Binding of rho factor to Escherichia coli RNA polymerase mediated by nusA protein.

  1984cited by this paper
• Rho-dependent termination of transcription. II. Kinetics of mRNA elongation during transcription from the bacteriophage lambda PR promoter.

  1983cited by this paper
• RNA polymerase pausing and transcript release at the lambda tR1 terminator in vitro.

  1983cited by this paper
• The nucleotide sequence of the rho gene of E. coli K-12.

  1983cited by this paper
• Rho-dependent termination of transcription. I. Identification and characterization of termination sites for transcription from the bacteriophage lambda PR promoter.

  1983cited by this paper
• The nucleotde sequence of the rho gene of E. coli K-12

  1983cited by this paper
• Stabilization of the hexameric form of Escherichia coli protein rho under ATP hydrolysis conditions.

  1982cited by this paper
• rho Factors from polarity suppressor mutants with defects in their RNA interactions.

  1982cited by this paper
• Transcription terminates at lambda tR1 in three clusters.

  1982cited by this paper
• Activation of rho protein ATPase requires simultaneous interaction at two kinds of nucleic acid-binding sites.

  1982cited by this paper
• Tandem termination sites in the tryptophan operon of Escherichia coli.

  1981cited by this paper
• Blue ghosts: a new method for isolating amber mutants defective in essential genes of Escherichia coli

  1981cited by this paper
• Studies of RNA release reaction catalyzed by E. coli transcription termination factor rho using isolated ternary transcription complexes.

  1980cited by this paper
• ATP-induced changes in the binding of RNA synthesis termination protein Rho to RNA.

  1980cited by this paper

• DNA binding of an RNA helicase bacterial transcription terminator

  2025cites this paper
• A bacterial regulatory uORF senses multiple classes of ribosome-targeting antibiotics

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• The Psu protein of phage satellite P4 inhibits transcription termination factor ρ by forced hyper-oligomerization

  2025cites this paper
• Phase variation of flagella and toxins in Clostridioides difficile is mediated by selective Rho-dependent termination.

  2024cites this paper
• Pathological R-loops in bacteria from engineered expression of endogenous antisense RNAs whose synthesis is ordinarily terminated by Rho

  2024cites this paper
• Cancer cells forgo translating mRNA transcribed from genes of nonspecialized tasks

  2024cites this paper
• Rho and riboswitch-dependent regulations of mntP gene expression evade manganese and membrane toxicities

  2024cites this paper
• Translation selectively destroys non-functional transcription complexes

  2024cites this paper
• Rho-dependent termination enables cellular pH homeostasis

  2024cites this paper
• Rho and a riboswitch regulate mntP expression evading manganese stress and membrane toxicity

  2023cites this paper
• Widespread gene regulator Psu inhibits transcription termination factor ρ by forced hyper-oligomerization

  2023cites this paper
• Transcription–translation coupling: Recent advances and future perspectives

  2023cites this paper
• Transcriptional pause extension benefits the stand-by rather than catch-up Rho-dependent termination

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• No Transcriptional Compensation for Extreme Gene Dosage Imbalance in Fragmented Bacterial Endosymbionts of Cicadas

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• Identification of a Rho-Dependent Termination Site In Vivo Using Synthetic Small RNA

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• Single-molecule tracking reveals dynamic regulation of ribosomal scanning

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• Factor-stimulated intrinsic termination: getting by with a little help from some friends

  2022cites this paper
• Comprehensive transcription terminator atlas for Bacillus subtilis

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• Identification of Rho-dependent termination site in vivo using synthetic sRNA

  2022cites this paper
• Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase

  2022cites this paper
• In vivo regulation of bacterial Rho-dependent transcription termination by the nascent RNA

  2022cites this paper
• Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus

  2022cites this paper
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  2021cites this paper
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  2012cites this paper
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