The second paradigm for activation of transcription.

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Progress in Nucleic Acid Research and Molecular Biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/S0079-6603(04)79007-8PMID 16096032
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Structural Insights into the Activity of Enhancer-Binding Proteins

  2005cited by this paper
• Phosphorylation-independent Dimer-Dimer Interactions by the Enhancer-binding Activator NtrC of Escherichia coli

  2004cited by this paper
• Helicobacter pylori FlgR Is an Enhancer-Independent Activator of σ54-RNA Polymerase Holoenzyme

  2004cited by this paper
• Communication between Eσ54, promoter DNA and the conserved threonine residue in the GAFTGA motif of the PspF σ54‐dependent activator during transcription activation

  2004cited by this paper
• ATP-dependent transcriptional activation by bacterial PspF AAA+protein.

  2004cited by this paper
• Role of the amino‐terminal GAF domain of the NifA activator in controlling the response to the antiactivator protein NifL

  2004cited by this paper
• The regulation of bacterial transcription initiation

  2004cited by this paper
• Organization of the AAA+ Adaptor Protein PspA Is an Oligomeric Ring*

  2004cited by this paper
• Gene regulation by riboswitches

  2004cited by this paper
• Reorganisation of an RNA polymerase–promoter DNA complex for DNA melting

  2004cited by this paper
• Purification and Characterization of the AAA+ Domain of Sinorhizobium meliloti DctD, a σ54-Dependent Transcriptional Activator

  2004cited by this paper
• Bacterial Transcriptional Regulators for Degradation Pathways of Aromatic Compounds

  2004cited by this paper
• Regulated communication between the upstream face of RNA polymerase and the β′ subunit jaw domain

  2004cited by this paper
• Nucleotide-dependent interactions between a fork junction-RNA polymerase complex and an AAA+ transcriptional activator protein.

  2004cited by this paper
• A regulator that inhibits transcription by targeting an intersubunit interaction of the RNA polymerase holoenzyme.

  2004cited by this paper
• Bacteriophage-induced modifications of host RNA polymerase.

  2003cited by this paper
• Secretion Defects That Activate the Phage Shock Response of Escherichia coli

  2003cited by this paper
• The ATP hydrolyzing transcription activator phage shock protein F of Escherichia coli: Identifying a surface that binds σ54

  2003cited by this paper
• Mapping sigma 54-RNA polymerase interactions at the -24 consensus promoter element.

  2003cited by this paper
• Mapping σ54-RNA Polymerase Interactions at the –24 Consensus Promoter Element*

  2003cited by this paper
• Domain Architectures of σ54-Dependent Transcriptional Activators

  2003cited by this paper
• Nucleotide-dependent Triggering of RNA Polymerase-DNA Interactions by an AAA Regulator of Transcription*

  2003cited by this paper
• Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains.

  2003cited by this paper
• Multiple sigma subunits and the partitioning of bacterial transcription space.

  2003cited by this paper
• RNA Polymerase Subunit Requirements for Activation by the Enhancer-binding Protein Rhodobacter capsulatus NtrC*

  2003cited by this paper
• Bacterial RNA polymerases: the wholo story.

  2003cited by this paper
• Characterization of the interactions between the bacteriophage T4 AsiA protein and RNA polymerase.

  2003cited by this paper
• Domain architectures of sigma54-dependent transcriptional activators.

  2003cited by this paper
• Multiple roles of the RNA polymerase beta subunit flap domain in sigma 54-dependent transcription.

  2003cited by this paper
• The σ70 family of sigma factors

  2003cited by this paper
• The sigma70 family of sigma factors.

  2003cited by this paper
• The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination.

  2003cited by this paper
• AAA proteins.

  2002cited by this paper
• Beta subunit residues 186-433 and 436-445 are commonly used by Esigma54 and Esigma70 RNA polymerase for open promoter complex formation.

  2002cited by this paper
• The Downstream DNA Jaw of Bacterial RNA Polymerase Facilitates Both Transcriptional Initiation and Pausing*

  2002cited by this paper
• Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution

  2002cited by this paper
• Transcriptional Activation of a Heat-shock Gene,lonD, of Myxococcus xanthus by a Two Component Histidine-Aspartate Phosphorelay System*

  2002cited by this paper
• Correlating protein footprinting with mutational analysis in the bacterial transcription factor sigma54 (sigmaN).

  2002cited by this paper
• Structural Basis of Transcription Initiation: RNA Polymerase Holoenzyme at 4 Å Resolution

  2002cited by this paper
• New roles for conserved regions within a sigma 54-dependent enhancer-binding protein.

  2002cited by this paper
• Mechanochemical ATPases and transcriptional activation

  2002cited by this paper
• A Role for Interaction of the RNA Polymerase Flap Domain with the σ Subunit in Promoter Recognition

  2002cited by this paper
• Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF.

  2002cited by this paper
• Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: a structural model of its N-terminal domain.

  2002cited by this paper
• FleQ, the Major Flagellar Gene Regulator in Pseudomonas aeruginosa, Binds to Enhancer Sites Located Either Upstream or Atypically Downstream of the RpoN Binding Site

  2002cited by this paper
• Structural Basis of Transcription Initiation: An RNA Polymerase Holoenzyme-DNA Complex

  2002cited by this paper
• Correlating protein footprinting with mutational analysis in the bacterial transcription factor σ54 (σN)

  2002cited by this paper
• New Roles for Conserved Regions within a ς54-dependent Enhancer-binding Protein*

  2002cited by this paper
• β subunit residues 186-433 and 436-445 are commonly used by Eσ54 and Eσ70 RNA polymerase for open promoter complex formation

  2002cited by this paper
• Structural insights into the regulation of bacterial signalling proteins containing PRDs.

  2001cited by this paper
• Transcriptional regulation at a distance in bacteria.

  2001cited by this paper
• AAA+ superfamily ATPases: common structure–diverse function

  2001cited by this paper
• In vitro roles of invariant helix-turn-helix motif residue R383 in sigma(54) (sigma(N)).

  2001cited by this paper
• The psp locus of Yersinia enterocolitica is required for virulence and for growth in vitro when the Ysc type III secretion system is produced

  2001cited by this paper
• Regulatory sequences in sigma 54 localise near the start of DNA melting.

  2001cited by this paper
• Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

  2001cited by this paper
• Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli.

  2001cited by this paper
• Roles for the C-terminal Region of Sigma 54 in Transcriptional Silencing and DNA Binding*

  2001cited by this paper
• Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action.

  2001cited by this paper
• New insights into the activation of o‐xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substrates

  2001cited by this paper
• Metabolic Context and Possible Physiological Themes of ς54-Dependent Genes in Escherichia coli

  2001cited by this paper
• Transcription Initiation-Defective Forms of ς54 That Differ in Ability To Function with a Heteroduplex DNA Template

  2000cited by this paper
• Dissection of Two Hallmarks of the Open Promoter Complex by Mutation in an RNA Polymerase Core Subunit*

  2000cited by this paper
• Phosphorylation-Induced Signal Propagation in the Response Regulator NtrC

  2000cited by this paper
• Competition among seven Escherichia coli sigma subunits: relative binding affinities to the core RNA polymerase.

  2000cited by this paper
• The role of Region II in the RNA polymerase factor N (54)

  2000cited by this paper
• Interaction of sigma factor sigmaN with Escherichia coli RNA polymerase core enzyme.

  2000cited by this paper
• Conservation of sigma–core RNA polymerase proximity relationships between the enhancer‐independent and enhancer‐dependent sigma classes

  2000cited by this paper
• Secondary structure and DNA binding by the C-terminal domain of the transcriptional activator NifA from Klebsiella pneumoniae.

  2000cited by this paper
• The PspA Protein of Escherichia coli Is a Negative Regulator of ς54-Dependent Transcription

  2000cited by this paper
• The Amino Terminus of Salmonella enterica Serovar Typhimurium ς54 Is Required for Interactions with an Enhancer-Binding Protein and Binding to Fork Junction DNA

  2000cited by this paper
• Isomerization of a binary sigma–promoter DNA complex by transcription activators

  2000cited by this paper
• RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

  2000cited by this paper
• Low Resolution Structure of the ς54 Transcription Factor Revealed by X-ray Solution Scattering*

  2000cited by this paper
• The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences.

  2000cited by this paper
• The Bacterial Enhancer-Dependent ς54(ςN) Transcription Factor

  2000cited by this paper
• Sequences in sigma(54) region I required for binding to early melted DNA and their involvement in sigma-DNA isomerisation.

  2000cited by this paper
• Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of control.

  2000cited by this paper
• Transcription activation by catabolite activator protein (CAP).

  1999cited by this paper
• Amino-terminal sequences of sigmaN (sigma54) inhibit RNA polymerase isomerization.

  1999cited by this paper
• Involvement of the FtsH (HflB) protease in the activity of σ54 promoters

  1999cited by this paper
• In vivo and in vitro activities of the Escherichia coli sigma54 transcription activator, PspF, and its DNA-binding mutant, PspFDeltaHTH.

  1999cited by this paper
• Suppression analysis of positive control mutants of NifA reveals two overlapping promoters for Klebsiella pneumoniae rpoN.

  1999cited by this paper
• Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

  1999cited by this paper
• Compilation and analysis of σ54-dependent promoter sequences

  1999cited by this paper
• Functions of the sigma(54) region I in trans and implications for transcription activation.

  1999cited by this paper
• Solution structure of the DNA-binding domain of NtrC with three alanine substitutions.

  1999cited by this paper
• Role of ArgR in Activation of the ast Operon, Encoding Enzymes of the Arginine Succinyltransferase Pathway in Salmonella typhimurium

  1999cited by this paper
• Targeted protein footprinting: where different transcription factors bind to RNA polymerase.

  1999cited by this paper
• Sequences in sigmaN determining holoenzyme formation and properties.

  1999cited by this paper
• AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.

  1999cited by this paper
• Inhibition of Escherichia coli RNA polymerase by bacteriophage T7 gene 2 protein.

  1999cited by this paper
• The sigma 54 DNA‐binding domain includes a determinant of enhancer responsiveness

  1999cited by this paper
• A fork junction DNA–protein switch that controls promoter melting by the bacterial enhancer‐dependent sigma factor

  1999cited by this paper
• Region I modifies DNA-binding domain conformation of sigma 54 within the holoenzyme.

  1999cited by this paper
• Regulation of Sigma 54-Dependent Transcription by Core Promoter Sequences: Role of −12 Region Nucleotides

  1999cited by this paper
• Anti-sigma factors.

  1999cited by this paper
• Compilation and analysis of sigma(54)-dependent promoter sequences.

  1999cited by this paper
• The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized.

  1999cited by this paper
• Systematic analysis of sigma54 N-terminal sequences identifies regions involved in positive and negative regulation of transcription.

  1999cited by this paper

• Characterization of the transcriptionally active form of dephosphorylated DctD complexed with dephospho-IIAGlc

  2024cites this paper
• The XylR/NtrC-type Regulator CbsR Positively Regulates Upstream Pathway of Chlorobenzene Degradation in Pandoraea pnomenusa.

  2023cites this paper
• A Role for the RNA Polymerase Gene Specificity Factor σ54 in the Uniform Colony Growth of Uropathogenic Escherichia coli

  2022cites this paper
• The RNA polymerase gene specificity factor σ54 is required for homogeneous non-planktonic growth of uropathogenic Escherichia coli

  2022cites this paper
• tepR encoding a bacterial enhancer‐binding protein orchestrates the virulence and interspecies competition of Burkholderia glumae through qsmR and a type VI secretion system

  2020cites this paper
• Mechanistic insights into c-di-GMP–dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa

  2015cites this paper
• Sigma Factor N: A Novel Regulator of Acid Resistance and Locus of Enterocyte Effacement in Escherichia coli O157:H7

  2014cites this paper
• Transcription of the Lysine-2,3-Aminomutase Gene in the kam Locus of Bacillus thuringiensis subsp. kurstaki HD73 Is Controlled by Both σ54 and σK Factors

  2014cites this paper
• Self association and transcription activation determinants in a bacterial enhancer binding protein

  2013influential citation
• Evidence for self‐association of the alternative sigma factor σ54

  2013cites this paper
• An aromatic residue switch in enhancer-dependent bacterial RNA polymerase controls transcription intermediate complex activity

  2013cites this paper
• The Role of Bacterial Enhancer Binding Proteins as Specialized Activators of σ54-Dependent Transcription

  2012cites this paper
• A dual switch controls bacterial enhancer-dependent transcription

  2012cites this paper
• Evolutionary origin of the Rhodobacter sphaeroides specialized RpoN sigma factors.

  2012cites this paper
• Coupling AAA protein function to regulated gene expression.

  2012cites this paper
• Novel Regulator MphX Represses Activation of Phenol Hydroxylase Genes Caused by a XylR/DmpR-Type Regulator MphR in Acinetobacter calcoaceticus

  2011cites this paper
• Single Chain Forms of the Enhancer Binding Protein PspF Provide Insights into Geometric Requirements for Gene Activation*

  2011cites this paper
• Regulation of the Hrp type III secretion system in Pseudomonas syringae pv. tomato DC3000

  2011influential citation
• Interdomain repression in the enhancer binding protein NorR

  2011cites this paper
• Characterization of the endosymbiotic forms of sinorhizobium sp. Strain NGR234

  2011cites this paper
• Mechanisms for activating bacterial RNA polymerase.

  2010influential citation
• Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point.

  2009cites this paper
• Identification of the binding site of the {sigma}54 hetero-oligomeric FleQ/FleT activator in the flagellar promoters of Rhodobacter sphaeroides.

  2009cites this paper
• The role of the conserved phenylalanine in the σ54-interacting GAFTGA motif of bacterial enhancer binding proteins

  2009cites this paper
• Modus operandi of the bacterial RNA polymerase containing the σ54 promoter‐specificity factor

  2008cites this paper
• σ54‐RNA polymerase controls σ70‐dependent transcription from a non‐overlapping divergent promoter

  2008cites this paper
• Visualizing the organization and reorganization of transcription complexes for gene expression.

  2008cites this paper
• An Intramolecular Route for Coupling ATPase Activity in AAA+ Proteins for Transcription Activation*

  2008cites this paper
• Protein-DNA interactions that govern AAA+ activator-dependent bacterial transcription initiation.

  2008cites this paper
• Trapping of a transcription complex using a new nucleotide analogue: AMP aluminium fluoride.

  2008cites this paper
• Bacterial enhancer-binding proteins: unlocking sigma54-dependent gene transcription.

  2007cites this paper
• Bacterial enhancer-binding proteins: unlocking σ54-dependent gene transcription

  2007cites this paper
• A Role for the Conserved GAFTGA Motif of AAA+ Transcription Activators in Sensing Promoter DNA Conformation*

  2007cites this paper
• Structures and organisation of AAA+ enhancer binding proteins in transcriptional activation.

  2006cites this paper
• A second paradigm for gene activation in bacteria.

  2006cites this paper
• Mapping ATP-dependent Activation at a σ54 Promoter*

  2006cites this paper
• Interplay between the β′ Clamp and the β′ Jaw Domains during DNA Opening by the Bacterial RNA Polymerase at σ54-dependent Promoters

  2006cites this paper
• Heterogeneous Nucleotide Occupancy Stimulates Functionality of Phage Shock Protein F, an AAA+ Transcriptional Activator*

  2006cites this paper
• Interplay between the beta' clamp and the beta' jaw domains during DNA opening by the bacterial RNA polymerase at sigma54-dependent promoters.

  2006cites this paper
• Control catabólico y factores genéticos implicados en la respuesta de Pseudomonas putida KT2440 a situaciones ambientales

  2006cites this paper
• Mapping ATP-dependent activation at a sigma54 promoter.

  2006cites this paper
• Conformational changes of Escherichia coli sigma54-RNA-polymerase upon closed-promoter complex formation.

  2005cites this paper