Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Microbial Ecology

• Publication date

  2013-05-07

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00248-013-0238-8PMID 23649297
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Assessment of Variation in Bacterial Composition among Microhabitats in a Mangrove Environment Using DGGE Fingerprints and Barcoded Pyrosequencing

  2012cited by this paper
• Bacterial community in the roots and rhizosphere of Hypericum silenoides Juss. 1804

  2012cited by this paper
• Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

  2012influential reference
• Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

  2012cited by this paper
• The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

  2012cited by this paper
• BIPES, a cost-effective high-throughput method for assessing microbial diversity

  2011influential reference
• Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

  2011cited by this paper
• Metagenomic biomarker discovery and explanation

  2011influential reference
• UCHIME improves sensitivity and speed of chimera detection

  2011influential reference
• UniFrac: an effective distance metric for microbial community comparison

  2011influential reference
• Impact of root exudates and plant defense signaling on bacterial communities in the rhizosphere. A review

  2011cited by this paper
• Assessment of 16S rRNA gene-based phylogenetic diversity and promising plant growth-promoting traits of Acinetobacter community from the rhizosphere of wheat.

  2010cited by this paper
• Taking Root: Enduring Effect of Rhizosphere Bacterial Colonization in Mangroves

  2010cited by this paper
• Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil.

  2010influential reference
• Potential microbial diversity in mangrove ecosystems: a review.

  2009cited by this paper
• Polycyclic Aromatic Hydrocarbon-Induced Structural Shift of Bacterial Communities in Mangrove Sediment

  2009cited by this paper
• Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

  2009cited by this paper
• Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

  2008influential reference
• Mangroves in the Gulf of California increase fishery yields

  2008cited by this paper
• Exploring the diversity of bacterial communities in sediments of urban mangrove forests.

  2008cited by this paper
• Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

  2008cited by this paper
• Recovery of novel bacterial diversity from mangrove sediment

  2007cited by this paper
• Genetic diversity of dioxygenase genes in polycyclic aromatic hydrocarbon-degrading bacteria isolated from mangrove sediments.

  2006cited by this paper
• Microbial diversity in the deep sea and the underexplored “rare biosphere”

  2006cited by this paper
• Isolation of PAH-degrading bacteria from mangrove sediments and their biodegradation potential.

  2005cited by this paper
• Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology

  2004cited by this paper
• Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing epsilon-proteobacterium isolated from a deep-sea hydrothermal vent.

  2002cited by this paper
• Conservation and sustainable exploitation of mangroves in Hong Kong

  2002cited by this paper
• Emergy evaluation of Mai Po mangrove marshes

  2000cited by this paper
• Characterization of depth-related population variation in microbial communities of a coastal marine sediment using 16S rDNA-based approaches and quinone profiling.

  2000cited by this paper
• Phylogeny of sulfate-reducing bacteria(1).

  2000cited by this paper
• Phylogeny of sulfate‐reducing bacteria

  2000cited by this paper
• Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients

  1997cited by this paper
• Isolation and Characterization of Plant Growth-Promoting Rhizobacteria

  1993cited by this paper
• Two new nitrogen-fixing bacteria from the rhizosphere of mangrove trees: Their isolation, identification and in vitro interaction with rhizosphere Staphylococcus sp.

  1992cited by this paper
• Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats.

  1985cited by this paper

• Biodegradation of high-molecular-weight PAHs in polluted mangrove sediments using indigenous microflora and exogenous strains Rhodococcus erythropolis T902.1 and Bacillus subtilis

  2026cites this paper
• Effect of bee species on the physicochemical, bioactive, and microbiological properties of longan honey in Thailand

  2026cites this paper
• Comparative analysis of renal dysfunction, immune remodeling, and gut microbiota profiles in dietary models of metabolic liver disease.

  2026cites this paper
• Rhizospheric Bacterial Diversity and Biofilm-forming Plant Growth-promoting Bacteria from Bhitarkanika Mangrove, Odisha, India, for their Effects on the Growth of Avicennia officinalis L.

  2026cites this paper
• Resourceful utilization of Bougainvillea horticultural waste for synchronous degradation and power generation in MFCs.

  2026cites this paper
• Metagenomic analysis revealed the distribution of antibiotic resistance genes of Awang sheep (Ovis aries) gut microbiota

  2026cites this paper
• Dual-Action Grouper Bone and Wakame Hydrolysates Supplement Enhances Exercise Performance and Modulates Gut Microbiota in Mice

  2025cites this paper
• Comparison of Soil Bacterial Communities between Replanted and Natural Mangrove Forests in Quanzhou Bay Wetland of China

  2025cites this paper
• Spatiotemporal Characteristics of Bacterial Communities in Estuarine Mangrove Sediments in Zhejiang Province, China

  2025cites this paper
• Community structure and diversity of myxobacteria in soils from Inner Mongolia, China

  2025cites this paper
• Streptomyces lothianensis sp. nov., an Antibiotic‐Producing Strain Isolated From the Indian Sundarbans Mangrove Forest

  2025cites this paper
• Enhanced performance of electricity generation and vanadium (V) reduction in microbial fuel cells via an efficient optimizing method

  2025cites this paper
• MICROBIAL METABOLITES REGULATE SOCIAL NOVELTY VIA CAMKII NEURONS IN THE BNST

  2025cites this paper
• Mono- and Co-contamination of Cu and Pb may facilitate plant invasion by slowing the decomposition of native plant litter

  2025cites this paper
• Identifying gut microbiota composition disparities in autistic individuals and their unaffected siblings: correlations with clinical characteristics

  2025cites this paper
• The composition and function of soil microbial communities in mangroves vary with geographic regions rather than vegetation types

  2025cites this paper
• Influence of stand age on sediment bacterial communities in restored mangrove forests

  2025cites this paper
• Evidence for the effects on the wildlife gut microbiome by grazing: The potential gut microbiota transmission between Yunnan snub-nosed monkeys (Rhinopithecus bieti) and sympatric livestock

  2025cites this paper
• Virulence, antimicrobial resistance characteristics, and intestinal microbial composition changes of Vibrio isolated from a Macrobrachium rosenbergii aquaculture system

  2025cites this paper
• Screening and isolation of polyethylene microplastic degrading bacteria from mangrove sediments in southern China.

  2025cites this paper
• Comprehensive analysis of greenhouse gases emissions and microbial dynamics in glacier-fed lakes across various ablation stages.

  2025cites this paper
• Prokaryotic co-occurrence patterns in diverse Indian mangrove ecosystems

  2025cites this paper
• Dietary and environmental factors affecting the dynamics of the gut bacteria in Tibetan Awang sheep (Ovis aries) across divergent breeding models

  2025cites this paper
• Decaprenyl diphosphate synthases in Monolepta hieroglyphica: DPPS-mediated CoQ biosynthesis impacts juvenile hormone and gut microbiota.

  2025cites this paper
• Utilization of soil microbial community to enhance mechanical properties of geopolymer paste for sustainable construction materials

  2025cites this paper
• Pollen beebreads as a source of probiotics: a metagenomic and biochemical characterization

  2025cites this paper
• In Vitro and In Vivo Evaluation of Bacillus Strains as Prophylactic Agents Against Porcine Epidemic Diarrhea Virus

  2025cites this paper
• Phage Cocktail Alleviates Bacterial Canker of Kiwifruit by Modulating Bacterial Community Structure in Field Trial

  2025cites this paper
• Comparative analysis of gut microbiota in children with obstructive sleep apnea: assessing the efficacy of 16S rRNA gene sequencing in metabolic function prediction based on weight status

  2024cites this paper
• New approach for raw biogas: Production of single cell protein by sulfide-tolerant methane-oxidizing bacteria consortia

  2024cites this paper
• Lactiplantibacillus plantarum postbiotic protects against Salmonella infection in broilers via modulating NLRP3 inflammasome and gut microbiota

  2024cites this paper
• Elevated CO2 and Nitrogen Supply Boost N Use Efficiency and Wheat (T. aestivum cv. Yunmai) Growth and Differentiate Soil Microbial Communities Related to Ammonia Oxidization

  2024influential citation
• Variations in soil microbial communities in different saline soils under typical Populus spp. vegetation in alpine region of the Qaidam Basin, NW China.

  2024cites this paper
• Effects of High-Concentrate-Induced SARA on Antioxidant Capacity, Immune Levels and Rumen Microbiota and Function in Goats

  2024cites this paper
• Unlocking the potential: Sustainable land use of urban septic tank slurry as granules with emphasis on soil improvement and safety consideration

  2024cites this paper
• Analysis of Salt Stress on Soil Microbial Community Composition and Its Correlation with Active Components in the Rhizosphere of Acanthopanax senticosus

  2024influential citation
• Dynamic interplay between soil microbial communities, enzyme activities, and pear quality across planting years

  2024cites this paper
• Anti-aging effects of Lacticaseibacillus paracasei PS117 on cognitive and intestinal health in naturally-aged mice: A focus on senescence-related proteins and microbiota composition.

  2024cites this paper
• The Impact of Gut Microbiota Changes on Methotrexate-Induced Neurotoxicity in Developing Young Rats

  2024cites this paper
• Host-microbiota interactions in collagen-induced arthritis rats treated with human umbilical cord mesenchymal stem cell exosome and ginsenoside Rh2.

  2024cites this paper
• The alteration of fecal microbial and metabolic profile of gallstone patients in Taiwan: Single-center study

  2024cites this paper
• Lacticaseibacillus paracasei PS23 increases ghrelin levels and modulates microbiota composition: a post-hoc analysis of a randomized controlled study.

  2024cites this paper
• The effect of fiddler crab burrows on benthic communities in Sungai Sepang Mangrove Forest

  2024cites this paper
• Microbial diversity and prediction function profiling of microbial communities in rose jam

  2024cites this paper
• Mangroves in environmental engineering: Harnessing the multifunctional potential of Nature's coastal architects for sustainable ecosystem management

  2024cites this paper
• Seasonal regulation of tidal creek burrow distribution: Unveiling the dynamic interplay of biotic and abiotic factors

  2024cites this paper
• Difference of Microbial Community in the Stream Adjacent to the Mixed Antibiotic Effluent Source

  2024cites this paper
• Roadmap for the integration of environmental microbiomes in risk assessments under EFSA's remit

  2024cites this paper
• The Impact of Mycobacterium avium subsp. paratuberculosis on Intestinal Microbial Community Composition and Diversity in Small-Tail Han Sheep

  2024cites this paper
• Bacteria from nodules of Abrus mollis Hance: genetic diversity and screening of highly efficient growth-promoting strains

  2024cites this paper
• Diversity Patterns and Drivers of Soil Bacterial and Fungal Communities in a Muddy Coastal Wetland of China

  2024cites this paper
• Isolation and Cultivation of Carotenoid-Producing Strains from Tidal Flat Sediment and Proposal of Croceibacterium aestuarii sp. nov., a Novel Carotenoid-Producing Species in the Family Erythrobacteraceae

  2024cites this paper
• Impact of tidal fluctuations on bacterial community structure in Wuyuan Bay: A comparative analysis of waters inside and outside the tidal barrage

  2024cites this paper
• The interplay between host-specificity and habitat-filtering influences sea cucumber microbiota across an environmental gradient of pollution

  2024cites this paper
• Potential of plant growth-promoting microbes for improving plant and soil health for biotic and abiotic stress management in mangrove vegetation

  2024cites this paper
• Geographical distribution of mobile genetic elements in microbial communities along the Yucatan coast

  2024cites this paper
• Gut microbiota compositions in the carriers and noncarriers of third-generation cephalosporin-resistant Escherichia coli: A study among children in southern Taiwan.

  2024cites this paper
• Insights into the efficient electricity production performance using acid-treated straw in MFCs

  2024cites this paper
• Gradient inflammation in the pancreatic stump after pancreaticoduodenectomy: Two case reports and review of literature

  2024cites this paper
• High and Low Taxa Specificity of Rhizosphere Bacteria Communities of Mangrove (Rhizophora mucronata) from Kuala Langsa and Telaga Tujuh Island, East Aceh

  2024cites this paper
• Diversity and structural analysis of rhizosphere soil microbial communities in wild and cultivated Rhizoma Atractylodis Macrocephalae and their effects on the accumulation of active components

  2023cites this paper
• Disturbance and restoration of soil microbial communities after in-situ thermal desorption in a chlorinated hydrocarbon contaminated site.

  2023cites this paper
• Sediment microbial community structure associated to different ecological types of mangroves in Celestún, a coastal lagoon in the Yucatan Peninsula, Mexico

  2023cites this paper
• Changed cecal microbiota involved in growth depression of broiler chickens induced by immune stress

  2023cites this paper
• Composition and Function of Bacterial Communities of Bryophytes and Their Underlying Sediments in the Dajiuhu Peatland, Central China

  2023cites this paper
• Diversity of the fecal microbiota in Chinese ponies

  2023cites this paper
• Protective Effects of Clinacanthus nutans (Burm.f.) Lindau Aqueous Extract on HBV Mouse Model by Modulating Gut Microbiota and Liver Metabolomics

  2023cites this paper
• Microbial community and predictive functionalities associated with the marine sediment of Coastal Gujarat

  2023cites this paper
• The Co-Association of Enterobacteriaceae and Pseudomonas with Specific Resistant Cucumber against Fusarium Wilt Disease

  2023cites this paper
• N2O emission associated with shifts of bacterial communities in riparian wetland during the spring thawing periods

  2023cites this paper
• Effect of glyphosate and ciprofloxacin exposure on enteric bacteria of tadpoles.

  2023cites this paper
• Seasonal Change of Sediment Microbial Communities and Methane Emission in Young and Old Mangrove Forests in Xuan Thuy National Park

  2023cites this paper
• Soil microbial community structure, function and network along a mangrove forest restoration chronosequence.

  2023cites this paper
• Impact of artificial mixing and oxygenation on bacteria in a water transfer reservoir: Community succession and the role in water quality improvement.

  2023cites this paper
• The Difference in Diversity between Endophytic Microorganisms in White and Grey Zizania latifolia

  2023cites this paper
• Habitat Characteristics and Plant Community Dynamics Impact the Diversity, Composition, and Co-occurrence of Sediment Fungal Communities

  2023cites this paper
• Niche differentiation and influencing factors of nitrite oxidation bacteria Nitrospira in sediments of the Luan River estuary in China

  2023cites this paper
• Characterization of the microbial community and prediction of metabolic functions in an anaerobic/oxic system with magnetic micropolystyrene as a biocarrier

  2023cites this paper
• Analysis of Microbial Diversity in South Shetland Islands and Antarctic Peninsula Soils Based on Illumina High-Throughput Sequencing and Cultivation-Dependent Techniques

  2023influential citation
• High Diversity of Tick-associated Microbiota from Five Tick Species in Yunnan, China

  2023cites this paper
• Combination of Bacillus and Low Fertigation Input Promoted the Growth and Productivity of Chinese Cabbage and Enriched Beneficial Rhizosphere Bacteria Lechevalieria

  2023cites this paper
• Use of magnetic powder to effectively improve the denitrification employing the activated sludge fermentation liquid as carbon source.

  2023cites this paper
• The core mangrove microbiome reveals shared taxa potentially involved in nutrient cycling and promoting host survival

  2023cites this paper
• Microbial metabolites regulate social novelty via CaMKII neurons in the BNST.

  2023cites this paper
• Distribution of soil microorganisms in different complex soil layers in Mu Us sandy land

  2023cites this paper
• Co-occurrence pattern of bacteria and fungi on the leaves of invasive aquatic plant Alternanthera philoxeroides.

  2023cites this paper
• Effects of indoor and outdoor rearing system on geese biochemical parameters and cecal microbial composition

  2023cites this paper
• Gut microbiota-based metabolites of Xiaoyao Pills (a typical Traditional Chinese medicine) ameliorate depression by inhibiting fatty acid amide hydrolase levels in brain.

  2023cites this paper
• Effects of a long-term operation wetland for wastewater treatment on the spatial pattern and function of microbial communities in groundwater.

  2023cites this paper
• Untapped rich microbiota of mangroves of Pakistan: diversity and community compositions

  2023cites this paper
• The Zoige pioneer plant Leymus secalinus has different endophytic bacterial community structures to adapt to environmental conditions

  2023cites this paper
• Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils

  2022cites this paper
• Effects of dietary antimicrobial peptides on intestinal morphology, antioxidant status, immune responses, microbiota and pathogen disease resistance in grass carp Ctenopharyngodon idellus.

  2022cites this paper
• Volatile organic compounds and dominant bacterial community during aerobic composting of vegetable waste and cow manure co-complexing

  2022cites this paper
• Investigating the effect of microbial inoculants Frankia F1 on growth-promotion, rhizosphere soil physicochemical properties, and bacterial community of ginseng

  2022cites this paper
• Purification performance from bypass ecological treatment systems treating WWTPs effluents and improvement of water quality in receiving rivers: A case study in southern China.

  2022cites this paper
• Diversity of Myxobacteria Isolated from Indonesian Mangroves and Their Potential for New Antimicrobial Sources

  2022cites this paper
• Response of methanotrophic activity and community structure to plant invasion in China’s coastal wetlands

  2022cites this paper
• Polyphenol-Rich Liupao Tea Extract Prevents High-Fat Diet-Induced MAFLD by Modulating the Gut Microbiota

  2022cites this paper
• The Mangrove Microbiome of the Malay Peninsula

  2022cites this paper