Genome-wide atlas of gene expression in the adult mouse brain

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Nature

• Publication date

  2007-01-11

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1038/nature05453PMID 17151600
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Aldolase C/zebrin II and the regionalization of the cerebellum

  2007cited by this paper
• Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain

  2007cited by this paper
• BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

  2006cited by this paper
• Synaptic adhesion molecules

  2006cited by this paper
• Correspondence and requests for materials should be addressed to:

  2006cited by this paper
• Molecular taxonomy of major neuronal classes in the adult mouse forebrain

  2006cited by this paper
• RNA transport and local control of translation.

  2005cited by this paper
• Redefining the boundaries of the hippocampal CA2 subfield in the mouse using gene expression and 3‐dimensional reconstruction

  2005cited by this paper
• Neuropeptide and calcium‐binding protein gene expression profiles predict neuronal anatomical type in the juvenile rat

  2005cited by this paper
• Image processing and analysis

  2005cited by this paper
• NPY/AgRP Neurons Are Essential for Feeding in Adult Mice but Can Be Ablated in Neonates

  2005cited by this paper
• A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.

  2005cited by this paper
• The Transcriptional Landscape of the Mammalian Genome

  2005cited by this paper
• Image processing and analysis - variational, PDE, wavelet, and stochastic methods

  2005cited by this paper
• EMAGE: a spatial database of gene expression patterns during mouse embryo development

  2005cited by this paper
• Adult mouse brain gene expression patterns bear an embryologic imprint.

  2005cited by this paper
• Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both.

  2005cited by this paper
• Neurogenomics: at the intersection of neurobiology and genome sciences

  2004cited by this paper
• Interneurons of the neocortical inhibitory system

  2004cited by this paper
• Defining a Molecular Atlas of the Hippocampus Using DNA Microarrays and High-Throughput In Situ Hybridization

  2004cited by this paper
• Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis

  2004cited by this paper
• Regional dissociations within the hippocampus--memory and anxiety.

  2004cited by this paper
• GenePaint.org: an atlas of gene expression patterns in the mouse embryo

  2004cited by this paper
• Interneuron Diversity series: Molecular and genetic tools to study GABAergic interneuron diversity and function.

  2004cited by this paper
• Novel Approaches to Monitor and Manipulate Single Neurons In Vivo

  2004cited by this paper
• DAVID: Database for Annotation, Visualization, and Integrated Discovery

  2003cited by this paper
• A gene expression atlas of the central nervous system based on bacterial artificial chromosomes

  2003cited by this paper
• Single-Cell Microarray Analysis in Hippocampus CA1: Demonstration and Validation of Cellular Heterogeneity

  2003cited by this paper
• Connective tissue growth factor: a novel marker of layer VII neurons in the rat cerebral cortex.

  2003cited by this paper
• DAVID: Database for Annotation, Visualization, and Integrated Discovery

  2003cited by this paper
• Synaptic adhesion molecules.

  2003cited by this paper
• Analysis of Subcellularly Localized mRNAs Using in Situ Hybridization, mRNA Amplification, and Expression Profiling

  2002cited by this paper
• Coordinated transcription of key pathways in the mouse by the circadian clock.

  2002cited by this paper
• The Longitudinal Axis of the Hippocampal Formation: Its Anatomy, Circuitry, and Role in Cognitive Function

  2002cited by this paper
• Handbook of Medical Imaging. Processing and Analysis

  2002cited by this paper
• A Genetic Method for Selective and Quickly Reversible Silencing of Mammalian Neurons

  2002cited by this paper
• Expression profile of 30,000 genes in rat hippocampus using SAGE

  2001cited by this paper
• Characterization of CART neurons in the rat and human hypothalamus

  2001cited by this paper
• Handbook of Medical Imaging—Processing and Analysis

  2001cited by this paper
• Virus-Assisted Mapping of Neural Inputs to a Feeding Center in the Hypothalamus

  2001cited by this paper
• Loss of recent memory after bilateral hippocampal lesions. 1957.

  2000cited by this paper
• Role for rapid dendritic protein synthesis in hippocampal mGluR-dependent long-term depression.

  2000cited by this paper
• Regional and strain-specific gene expression mapping in the adult mouse brain.

  2000cited by this paper
• Encephalopsin: A Novel Mammalian Extraretinal Opsin Discretely Localized in the Brain

  1999cited by this paper
• A Genetic Approach to Visualization Neurotechnique of Multisynaptic Neural Pathways Using Plant Lectin Transgene

  1999cited by this paper
• Functional differentiation in the hippocampus

  1998cited by this paper
• The compartmentalization of the cerebellum.

  1997cited by this paper
• Early specification and autonomous development of cortical fields in the mouse hippocampus.

  1997cited by this paper
• Experience-dependent modification of synaptic plasticity in visual cortex

  1996cited by this paper
• A Requirement for Local Protein Synthesis in Neurotrophin-Induced Hippocampal Synaptic Plasticity

  1996cited by this paper
• Alignment by Maximization of Mutual Information

  1995cited by this paper
• Brain Maps: Structure of the Rat Brain

  1992cited by this paper
• In situ hybridization histochemistry of Ca2+/calmodulin-dependent protein kinase in developing rat brain

  1990cited by this paper
• Parasagittal organization of the rat cerebellar cortex: Direct comparison of purkinje cell compartments and the organization of the spinocerebellar projection

  1990cited by this paper
• Organization of intrahippocampal projections originating from CA3 pyramidal cells in the rat

  1990cited by this paper
• The three-dimensional organization of the hippocampal formation: a review of anatomical data.

  1989cited by this paper
• Spatial segregation of mRNA encoding myelin-specific proteins.

  1987cited by this paper
• Human amnesia and the medial temporal region: enduring memory impairment following a bilateral lesion limited to field CA1 of the hippocampus

  1986cited by this paper
• LOSS OF RECENT MEMORY AFTER BILATERAL HIPPOCAMPAL LESIONS

  1957cited by this paper

• Sex differences in AMPA receptor trafficking proteins.

  2026cites this paper
• Macrostructural, microstructural, and cellular effects of neuroinflammation on the mouse brain

  2026cites this paper
• Spatial transcriptomics reveals brain-wide circadian disruption in an Alzheimer’s disease model

  2026cites this paper
• Dynamic Routing on a Static Structure: Noradrenergic Gating of Cortical Wave Propagation

  2026cites this paper
• Spatially-resolved molecular sex differences at single cell resolution in the adult human ventromedial and arcuate hypothalamus

  2026cites this paper
• Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte shifts in epileptogenesis beyond the hippocampus

  2026cites this paper
• SCALPEL: A pipeline for processing large-scale spatial transcriptomics data

  2026cites this paper
• Electro-Calcium uncoupling precedes neurodegeneration in Alzheimer’s disease

  2026cites this paper
• Brain-wide mapping of oligodendrocyte organization, oligodendrogenesis, and myelin injury.

  2026cites this paper
• MiniPromoters Ple384 (TH) and Ple388 (PITX3) for targeting midbrain dopaminergic neurons in mice and monkeys.

  2026cites this paper
• A genetically defined midbrain-pontine circuit gates vocal communication

  2026cites this paper
• Microglial Lag3 Drives α-Synuclein–induced Neurotoxic Activated (A1) Astrocytes and Neurodegeneration

  2026cites this paper
• Spatial transcriptomics in epilepsy research: Early successes, opportunities, and challenges.

  2026cites this paper
• Lack of striatal-enriched protein tyrosine phosphatase affected the serotonin system, behavior, and brain morphology in mice

  2026cites this paper
• The interpretable multimodal dimension reduction framework SpaHDmap enhances resolution in spatial transcriptomics

  2026influential citation
• gnSPADE: Incorporating Gene Network Structures Enhances Reference‐Free Deconvolution in Spatial Transcriptomics

  2026cites this paper
• Neural substrates of female sexual rejection: hypothalamic pathways to the periaqueductal gray

  2026cites this paper
• A Key Regulator of Dendritic Morphology in Supragranular Neocortex Impacts Mismatch Negativity

  2026cites this paper
• Synapse types are spatially associated with regional hemodynamics in the mouse brain.

  2026cites this paper
• Sex-specific differences in mediobasal hypothalamus in response to nutritional states.

  2026cites this paper
• A data-driven framework linking the connectome to spatial gene expression gradients inspired by chemoaffinity theory.

  2026cites this paper
• Slc6a9 is distributed in glial cells and neurons across several nervous system regions, whereas Slc6a5 is more restricted to neurons in the caudal brain

  2026cites this paper
• A silent Kv channel subunit shapes PV neuron action potential waveform and short-term synaptic plasticity during high-frequency firing.

  2026cites this paper
• Comprehensive 3D mapping reveals distinct spatial gradients of SST, PV, and TH interneurons across the mouse caudoputamen

  2026cites this paper
• Cerebellar Resistance to Amyloid Plaque Deposition and Elevated Microglial ECM Proteoglycan Uptake in 5xFAD Mice

  2026influential citation
• Multi-modal brain data exploration software for imaging transcriptomics: A comparative evaluation and future directions

  2026cites this paper
• Single-cell map of the female brain across reproductive transitions

  2026cites this paper
• An orthogonal TRAP enables intersectional genetic access to activated neurons in the mouse brain

  2026cites this paper
• Primate gut microbiota induce evolutionarily salient changes in mouse neurodevelopment.

  2026cites this paper
• Photo-cross-linking-assisted deorphanization deciphers GPR50-L-LEN pairing in metabolism.

  2026cites this paper
• Brain-wide Organization of Post-Synaptic Sites: Three Principles

  2026cites this paper
• Brain neuron-derived WDFY1 induces bone loss

  2026cites this paper
• Unlocking single-cell level and continuous whole-slide insights in spatial transcriptomics with PanoSpace.

  2026cites this paper
• A chemogenetic approach for temporal and cell-specific activation of endogenous GPCRs in vivo.

  2026cites this paper
• Metabolome Atlas of Brain Reveals Regional Shared and Unique Metabolic Drifts in Response to Type 2 Diabetes in Male Mice

  2026cites this paper
• The Periaqueductal Gray Selectively Supports Reversal Learning During a Flexible Discrimination Task in Mice

  2026cites this paper
• A spatial and projection-based transcriptomic atlas of paraventricular hypothalamic cell types.

  2026cites this paper
• Convergent transcriptomic and connectomic controllers of information integration and its anaesthetic breakdown across mammalian brains.

  2026cites this paper
• Integrating single-nucleus barcoding with spatial transcriptomics via Stamp-seq to reveal immunotherapy response-enhancing functional modules in NSCLC

  2026cites this paper
• Attention-guided enhanced deconvolution enables reference-free cell type estimation in spatial transcriptomics

  2026cites this paper
• AAV-only targeting of ventral tegmental area dopamine neurons for optical self-stimulation studies in mice

  2026cites this paper
• Multifrequency neuromagnetic activity and cognitive function in SeLECTS: network-based spectral alterations and genetic signatures.

  2026cites this paper
• Design and Development of an Automated Pipeline for Medical Hyperspectral Image Acquisition, Processing, and Fusion

  2026cites this paper
• Stereotactic rodent-to-human approximation of the mesencephalic cuneiform nucleus to guide deep brain stimulation.

  2026cites this paper
• Anatomic & functional brain atlases: connecting functional flexibility with fixed infrastructure

  2026cites this paper
• Distribution of Metabotropic Serotonin Receptors in GABAergic and Glutamatergic Neurons in the Auditory Midbrain

  2026cites this paper
• Preoptic kisspeptin-nNOS-GnRH (KiNG) neuronal network regulates LH rhythmicity through activation-inhibition in mice.

  2026cites this paper
• The Rostral Ventrolateral Medulla Input to Central Amygdala Regulates Anxiety‐Like Behaviors in Mice for Chronic Light Exposure

  2026cites this paper
• Region-resolved proteomic map of the human brain: functional interconnections and neurological implications

  2026cites this paper
• Higher-Order Thalamus is Pivotal in Schizophrenia-Associated Pathophysiology

  2026cites this paper
• An interactive 3D atlas of gene expression in the mouse brain

  2026cites this paper
• Spatial and Temporal Single-Cell Profiling of RNA Compartmentalization in Neurons with Nanotweezers

  2025cites this paper
• GPR171 is necessary for normal physiological functions and mood-related behaviors in males, but not females.

  2025cites this paper
• ProSAAS neuropeptides and receptors GPR171 and GPR83: Potential therapeutic applications for pain, anxiety, and body weight regulation.

  2025cites this paper
• Autism-related traits in myotonic dystrophy type 1 model mice are due to MBNL sequestration and RNA mis-splicing of autism-risk genes

  2025cites this paper
• Molecular mechanism establishing the OFF pathway in vision

  2025cites this paper
• SGTB: A graph representation learning model combining transformer and BERT for optimizing gene expression analysis in spatial transcriptomics data

  2025cites this paper
• Reanalysis of Published Histological Data Can Help to Characterize Neuronal Death After Spinal Cord Injury

  2025cites this paper
• Modeling functional connectivity with learning and memory in a mouse model of Alzheimer's disease

  2025cites this paper
• Synchrotron Radiation‐Based Tomography of an Entire Mouse Brain with Sub‐Micron Voxels: Augmenting Interactive Brain Atlases with Terabyte Data

  2025cites this paper
• Sperrfy the brain: A data-driven realization of Sperry’s Chemoaffinity theory in the neural connectome

  2025influential citation
• Spatial transcriptomics and genetically implicated genes identify putative causal tissue structures for complex traits

  2025cites this paper
• An extended and improved CCFv3 annotation and Nissl atlas of the entire mouse brain

  2025cites this paper
• Open-source antibodies as a path to enhanced research reproducibility and transparency.

  2025cites this paper
• GHS-R1a signaling drives anxiety-related behavior by shaping excitability of ventromedial hypothalamic neurons

  2025cites this paper
• Nitrous oxide enhances MR-guided focused ultrasound delivery of gene therapy to the murine hippocampus

  2025cites this paper
• A robust approach for analyzing and mapping hierarchical brain connectome towards laminar-specific neural networks

  2025cites this paper
• Synaptic proteome diversity is shaped by the levels of glutamate receptors and their regulatory proteins

  2025cites this paper
• Gene expression patterns decompose fMRI activation in a sub-region-specific manner in mice after nociceptive stimulation

  2025cites this paper
• Leveraging Transparent Ontology Learning to Refine Constructs in Neuroscience

  2025cites this paper
• Translating Brain Anatomy and Disease from Mouse to Human in Latent Gene Expression Space

  2025influential citation
• Advances in Microfluidic Single-Cell RNA Sequencing and Spatial Transcriptomics

  2025cites this paper
• An engine for systematic discovery of cause-effect relationships between brain structure and function

  2025cites this paper
• Thor: a platform for cell-level investigation of spatial transcriptomics and histology

  2025cites this paper
• Reelin marks cocaine-activated striatal neurons, promotes neuronal excitability, and regulates cocaine reward

  2025cites this paper
• A high-definition spatially resolved metabolomics method to illuminate the metabolic specificity and interconnection across mouse brain

  2025cites this paper
• Single-cell spatial transcriptomic atlas of the whole mouse brain.

  2025cites this paper
• Distinguish risk genes functioning at presynaptic or postsynaptic regions and key connectomes associated with pathological α-synuclein spreading

  2025cites this paper
• Single-cell omics and heterogeneity of neuroglial cells.

  2025cites this paper
• GH-releasing hormone neurons regulate the hypothalamic-pituitary-somatotropic axis via short-loop negative feedback.

  2025cites this paper
• The role of dorsal raphe nucleus neuropeptides in reward and aversion

  2025cites this paper
• Impaired thyroid hormone receptor signaling in anterior hypothalamic parvalbumin neurons causes bradycardia in male mice

  2025cites this paper
• Beyond vessels: unraveling the impact of VEGFs on neuronal functions and structure

  2025cites this paper
• Behavioral Modulation and Molecular Definition of Wide-Field Vertical Cells in the Mouse Superior Colliculus

  2025cites this paper
• Spatial Transcriptomics and Proteomics Profiling After Ischemic Stroke Reperfusion: Insights Into Vascular Alterations

  2025cites this paper
• Germline mosaicism in TCF20-associated neurodevelopmental disorders: a case study and literature review

  2025cites this paper
• Spatial Total RNA Sequencing of Formalin-Fixed Paraffin Embedded Tissues by spRandom-seq

  2025cites this paper
• Brain-wide presynaptic networks of functionally distinct cortical neurons

  2025cites this paper
• Defining the molecular identity and morphology of glia limitans superficialis astrocytes in vertebrates.

  2025cites this paper
• Deep-tissue transcriptomics and subcellular imaging at high spatial resolution

  2025cites this paper
• Single-cell and spatial genomic landscape of non-small cell lung cancer brain metastases

  2025cites this paper
• Trajectories of working memory and decision making abilities along juvenile development in mice

  2025cites this paper
• Heterogeneity of Layer 1 Interneurons in the Mouse Medial Prefrontal Cortex

  2025cites this paper
• STsisal: a reference-free deconvolution pipeline for spatial transcriptomics data

  2025cites this paper
• Spotiphy enables single-cell spatial whole transcriptomics across an entire section

  2025cites this paper
• Stress-induced GHS-R1a expression in medial prefrontal cortical neurons promotes vulnerability to anxiety in mice

  2025cites this paper
• Pain persists in mice lacking both Substance P and CGRPα signaling

  2025cites this paper
• Advances in Spatial Omics Technologies

  2025cites this paper
• Comprehensive profiling of anaesthetised brain dynamics across phylogeny

  2025cites this paper
• Suprachiasmatic Neuromedin-S Neurons Regulate Arousal

  2025cites this paper