Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Molecular Ecology

• Publication date

  2005-12-19

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/j.1365-294X.2005.02807.xPMID 16367826
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• Neuroendocrine control of growth hormone secretion

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• A resource allocation model describing consequences of artificial selection under metabolic stress.

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  1989cited by this paper
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  1988cited by this paper
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