Genome-wide patterns of divergence during speciation: the lake whitefish case study

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Philosophical Transactions of the Royal Society B: Biological Sciences

• Publication date

  2012-02-05

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1098/rstb.2011.0197PMID 22201165PMCID PMC3233710
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• What can patterns of differentiation across plant genomes tell us about adaptation and speciation?

  2012cited by this paper
• Establishment of new mutations under divergence and genome hitchhiking

  2012cited by this paper
• Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

  2012cited by this paper
• Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing

  2012cited by this paper
• A Hierarchical Bayesian Model for Next-Generation Population Genomics

  2011cited by this paper
• Rapid formation of distinct hybrid lineages after secondary contact of two fish species (Cottus sp.)

  2011cited by this paper
• Genetic distance and markers used in linkage mapping.

  2011cited by this paper
• SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)

  2011cited by this paper
• Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae)

  2011cited by this paper
• Genomic Hotspots for Adaptation: The Population Genetics of Müllerian Mimicry in Heliconius erato

  2010cited by this paper
• SNP Genotyping Defines Complex Gene-Flow Boundaries Among African Malaria Vector Mosquitoes

  2010cited by this paper
• Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

  2010cited by this paper
• THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION

  2010cited by this paper
• Next Generation Molecular Ecology

  2010cited by this paper
• Phenomics: the next challenge

  2010cited by this paper
• INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI

  2010cited by this paper
• On the origin of species: insights from the ecological genomics of lake whitefish

  2010cited by this paper
• A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

  2010cited by this paper
• Chromosomal speciation revisited: rearranging theory with pieces of evidence.

  2010cited by this paper
• Genome-wide analysis of a long-term evolution experiment with Drosophila

  2010cited by this paper
• THE DISTINCTIVE FOOTPRINTS OF LOCAL HITCHHIKING IN A VARIED ENVIRONMENT AND GLOBAL HITCHHIKING IN A SUBDIVIDED POPULATION

  2010cited by this paper
• Editorial and retrospective 2010

  2010cited by this paper
• The Transcriptional Landscape of Cross-Specific Hybrids and Its Possible Link With Growth in Brook Charr (Salvelinus fontinalis Mitchill)

  2010cited by this paper
• Role of epibenthic resource opportunities in the parallel evolution of lake whitefish species pairs (Coregonus sp.)

  2010cited by this paper
• Widespread Divergence Between Incipient Anopheles gambiae Species Revealed by Whole Genome Sequences

  2010cited by this paper
• Divergent selection and heterogeneous genomic divergence

  2009cited by this paper
• Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae).

  2009cited by this paper
• Genetics and ecological speciation

  2009cited by this paper
• Next-generation gap

  2009cited by this paper
• Natural selection in action during speciation

  2009cited by this paper
• Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species

  2009cited by this paper
• Comparative Genomic and Population Genetic Analyses Indicate Highly Porous Genomes and High Levels of Gene Flow between Divergent Helianthus Species

  2009cited by this paper
• The Phenomics and Expression Quantitative Trait Locus Mapping of Brain Transcriptomes Regulating Adaptive Divergence in Lake Whitefish Species Pairs (Coregonus sp.)

  2008cited by this paper
• Pervasive Sex-linked Effects on Transcription Regulation as Revealed by eQTL mapping in Lake Whitefish Species Pairs (Coregonus sp, Salmonidae)

  2008cited by this paper
• The genetic mosaic suggests a new role for hitchhiking in ecological speciation

  2008cited by this paper
• Pervasive Sex-Linked Effects on Transcription Regulation As Revealed by Expression Quantitative Trait Loci Mapping in Lake Whitefish Species Pairs (Coregonus sp., Salmonidae)

  2008cited by this paper
• The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp. Salmonidae) species pairs.

  2007cited by this paper
• Microarray challenges in ecology.

  2007cited by this paper
• Anecdotal, Historical and Critical Commentaries on Genetics: Helen Crouse (1914–2006): Imprinting and Chromosome Behavior

  2007cited by this paper
• Parallel evolution of lake whitefish dwarf ecotypes in association with limnological features of their adaptive landscape

  2007cited by this paper
• Divergence Between the Drosophila pseudoobscura and D. persimilis Genome Sequences in Relation to Chromosomal Inversions

  2007cited by this paper
• Linkage Maps of the dwarf and Normal Lake Whitefish (Coregonus clupeaformis) Species Complex and Their Hybrids Reveal the Genetic Architecture of Population Divergence

  2007cited by this paper
• Uncovering evolutionary patterns of gene expression using microarrays.

  2006cited by this paper
• The genetic basis of intrinsic and extrinsic post‐zygotic reproductive isolation jointly promoting speciation in the lake whitefish species complex (Coregonus clupeaformis)

  2006cited by this paper
• Genomic islands of differentiation between house mouse subspecies.

  2006cited by this paper
• Genomic Islands of Speciation in Anopheles gambiae

  2005cited by this paper
• FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)

  2004cited by this paper
• Generic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes.

  2004cited by this paper
• Genomic evidence for divergence with gene flow in host races of the larch budmoth

  2004cited by this paper
• Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans.

  2004cited by this paper
• Uncovering cryptic genetic variation

  2004cited by this paper
• Major Ecological Transitions in Wild Sunflowers Facilitated by Hybridization

  2003cited by this paper
• Genetic linkage of ecological specialization and reproductive isolation in pea aphids

  2001cited by this paper
• Genes and speciation

  2001cited by this paper
• Chromosomal rearrangements and speciation.

  2001cited by this paper
• The genic view of the process of speciation

  2001cited by this paper
• The Ecology of Adaptive Radiation

  2001cited by this paper
• Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis); relevance for speciation

  2001cited by this paper
• CORRELATED TROPHIC SPECIALIZATION AND GENETIC DIVERGENCE IN SYMPATRIC LAKE WHITEFISH ECOTYPES (COREGONUS CLUPEAFORMIS): SUPPORT FOR THE ECOLOGICAL SPECIATION HYPOTHESIS

  1999cited by this paper
• Experimental evidence for reduced hybrid viability between dwarf and normal ecotypes of lake whitefish (Coregonus clupeaformis Mitchill)

  1998cited by this paper
• MULTIPLE MODES OF SPECIATION INVOLVED IN THE PARALLEL EVOLUTION OF SYMPATRIC MORPHOTYPES OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS, SALMONIDAE)

  1997cited by this paper
• LABORATORY EXPERIMENTS ON SPECIATION: WHAT HAVE WE LEARNED IN 40 YEARS?

  1993cited by this paper
• ALLOPATRIC ORIGIN OF SYMPATRIC POPULATIONS OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS) AS REVEALED BY MITOCHONDRIAL‐DNA RESTRICTION ANALYSIS

  1990cited by this paper
• Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms.

  1973cited by this paper
• Animal species and evolution.

  1964cited by this paper
• Evidence of Subpopulations of Lake Whitefish, Coregonus clupeaformis, Involving a Dwarfed Form

  1964cited by this paper
• Notes on continuous stochastic phenomena.

  1950cited by this paper
• Genetics and the Origin of Species

  1937cited by this paper
• Genetics and the Origin of Species

  1937cited by this paper
• Annals of the New York Academy of Sciences the Role of Gene Expression in Ecological Speciation

  year unknowncited by this paper

• The molecular basis of punctuated equilibria: the roles of developmental genes in stasis and speciation

  2025cites this paper
• Genomic changes underlying repeated niche shifts in an adaptive radiation

  2022cites this paper
• The genetics of adaptation in freshwater Eurasian shad (Alosa)

  2022cites this paper
• Microsoft Word-00600-Merged.docx

  2021cites this paper
• Speciation, Process of

  2021cites this paper
• Gene flow influences the genomic architecture of local adaptation in six riverine fish species

  2021cites this paper
• Population structure, adaptation and divergence of the meadow spittlebug, Philaenus spumarius (Hemiptera, Aphrophoridae), revealed by genomic and morphological data

  2021cites this paper
• Genetic Causes and Consequences of Sympatric Morph Divergence in Salmonidae: A Search for Mechanisms.

  2021cites this paper
• The population genomics of repeated freshwater colonizations by Gulf pipefish

  2021cites this paper
• Maintenance of Species Differences in Closely Related Tetraploid Parasitic Euphrasia (Orobanchaceae) on an Isolated Island

  2020cites this paper
• Hybridization patterns between two marine snails, Littorina fabalis and L. obtusata

  2020cites this paper
• Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species

  2020cites this paper
• Genome-Wide Genotype-Expression Relationships Reveal Both Copy Number and Single Nucleotide Differentiation Contribute to Differential Gene Expression between Stickleback Ecotypes

  2019cites this paper
• Demographic Histories and Genome-Wide Patterns of Divergence in Incipient Species of Shorebirds

  2019cites this paper
• Architecture of Parallel Adaptation in Ten Lacustrine Threespine Stickleback Populations from the White Sea Area

  2019cites this paper
• Rapid and repeatable host plant shifts drive reproductive isolation following a recent human‐mediated introduction of the apple maggot fly, Rhagoletis pomonella

  2019cites this paper
• Génomique de la spéciation chez le Grand Corégone (Coregonus clupeaformis) : caractérisation des bases génomiques associées à la différenciation phénotypique

  2019influential citation
• Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister-species complex

  2018cites this paper
• Population Genomics of Speciation and Admixture

  2018cites this paper
• What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species

  2018cites this paper
• The Genetic Architecture Underlying the Evolution of a Rare Piscivorous Life History Form in Brown Trout after Secondary Contact and Strong Introgression

  2018cites this paper
• Architecture of parallel adaptation to freshwater in multiple populations of threespine stickleback

  2018cites this paper
• The role of adaptive evolution in the success of an agricultural weed, Helianthus annuus

  2018cites this paper
• A neutral view of the evolving genomic architecture of speciation

  2017cites this paper
• Potential of genomic approaches in conservation of plant and animal biodiversity in Africa: A review

  2017cites this paper
• A test of genomic modularity among life‐history adaptations promoting speciation with gene flow

  2017cites this paper
• Genomic and phenotypic analysis of Vavilov’s historic landraces reveals the impact of environment and genomic islands of agronomic traits

  2017cites this paper
• The genetic and molecular architecture of phenotypic diversity in sticklebacks

  2017cites this paper
• Recipient of the 2016 Molecular Ecology Prize: Louis Bernatchez – advancing the conservation of aquatic resources with his contributions on the ecological genomics of adaptation and speciation

  2017cites this paper
• Anthropogenic environmental changes induce introgression in sympatric whitefish ecotypes

  2017cites this paper
• Standing chromosomal variation in Lake Whitefish species pairs: the role of historical contingency and relevance for speciation

  2017cites this paper
• Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

  2017cites this paper
• Genomic heterogeneity of historical gene flow between two species of newts inferred from transcriptome data

  2016cites this paper
• Demographic history of speciation in a Senecio altitudinal hybrid zone on Mt. Etna

  2016cites this paper
• Genome-wide Patterns of Adaptation and Speciation and Demographic Histories of Young Radiations of Cichlids

  2016cites this paper
• Caractérisation des bases moléculaires de l'isolement reproducteur post-zygotique intrinsèque chez le Grand Corégone (Coregonus clupeaformis)

  2016cites this paper
• The impact of selection, gene flow and demographic history on heterogeneous genomic divergence: three‐spine sticklebacks in divergent environments

  2016cites this paper
• DEVELOPMENT OF GENOMIC RESOURCES FOR THE EVALUATION OF RED SNAPPER, AN EMERGING SPECIES CANDIDATE FOR MARINE AQUACULTURE AND STOCK ENHANCEMENT

  2016cites this paper
• Population genomic data delineate conservation units in mottled ducks (Anas fulvigula)

  2016cites this paper
• Evolutionary Consequences of Recent Secondary Contact Between Myzomela Honeyeaters

  2016cites this paper
• The genetics of extreme microgeographic adaptation: an integrated approach identifies a major gene underlying leaf trichome divergence in Yellowstone Mimulus guttatus

  2016cites this paper
• Are orphan genes protein-coding, prediction artifacts, or non-coding RNAs?

  2016cites this paper
• Powerful methods for detecting introgressed regions from population genomic data

  2016cites this paper
• Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)

  2016cites this paper
• Simple modifications of mowing regime promote butterflies in extensively managed meadows: Evidence from field-scale experiments

  2016cites this paper
• The genomic bases of morphological divergence and reproductive isolation driven by ecological speciation in Senecio (Asteraceae)

  2016influential citation
• Divergence in gene expression within and between two closely related flycatcher species

  2016cites this paper
• Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback

  2016cites this paper
• 1 MODELING THE MULTIPLE FACETS OF SPECIATION-WITH-GENE-FLOW TOWARDS IMPROVING DIVERGENCE HISTORY INFERENCE OF A RECENT FISH ADAPTIVE RADIATION

  2016cites this paper
• Detecting the drivers of divergence : identifying and estimating natural selection in threespine stickleback

  2016cites this paper
• Where the Lake Meets the Sea: Strong Reproductive Isolation Is Associated with Adaptive Divergence between Lake Resident and Anadromous Three-Spined Sticklebacks

  2015cites this paper
• Exploring the regulatory role of behaviour and genome architecture in the socially polymorphic ant, Leptothorax acervorum

  2015cites this paper
• Population genomics of natural and experimental populations of guppies (Poecilia reticulata)

  2015cites this paper
• From gametes to species: Genetic and non-genetic effects in parasite-mediated selection

  2015cites this paper
• Developing genomic resources for an emerging ecological model species Senecio lautus

  2015cites this paper
• Using genetic tools to inform management and study local adaptation in Pacific salmon

  2015cites this paper
• Genomic architecture of phenotypic divergence between two hybridizing plant species along an elevational gradient

  2015cites this paper
• Genomic signatures of geographic isolation and natural selection in coral reef fishes

  2015cites this paper
• Do North Atlantic eels show parallel patterns of spatially varying selection?

  2014cites this paper
• Gene Flow Happens

  2014cites this paper
• Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

  2014cites this paper
• Genome-Wide Congealing and Rapid Transitions across the Speciation Continuum during Speciation with Gene Flow.

  2014cites this paper
• Ecological adaptation and reproductive isolation in sympatry: genetic and phenotypic evidence for native host races of Rhagoletis pomonella

  2014cites this paper
• Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations?

  2014cites this paper
• Assessing when chromosomal rearrangements affect the dynamics of speciation: implications from computer simulations

  2014cites this paper
• Interspecific hybridization contributes to high genetic diversity and apparent effective population size in an endemic population of mottled ducks (Anas fulvigula maculosa)

  2014cites this paper
• Species and gene divergence in Littorina snails detected by array comparative genomic hybridization

  2014cites this paper
• Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes

  2014cites this paper
• Advances in Ecological Speciation: an integrative approach

  2014cites this paper
• A role for migration‐linked genes and genomic islands in divergence of a songbird

  2014cites this paper
• Ecological speciation and phenotypic plasticity affect ecosystems

  2014cites this paper
• Genome-wide congealing and rapid transitions across the speciation continuum during speciation with gene flow.

  2014cites this paper
• Genome evolution and speciation : insights from cichlid, coelacanth, and Xiphophorus fish

  2014cites this paper
• Genomic approaches to identify chromosomal regions responding to divergent selection in multiple Sebastes species (subgenus: Sebastosomus )

  2014cites this paper
• Detecting Signatures of Selection in a Population of Lake Whitefish (Coregonus clupeaformis) Subject to Overharvesting in Lesser Slave Lake, Alberta

  2014cites this paper
• Speciation in Freshwater Fishes

  2014cites this paper
• Study of morphogenesis and miRNA expression associated with craniofacial diversity in Arctic charr (Salvelinus alpinus) morphs

  2014cites this paper
• Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex

  2013cites this paper
• Differentiation at the MHCIIα and Cath2 Loci in Sympatric Salvelinus alpinus Resource Morphs in Lake Thingvallavatn

  2013cites this paper
• The population structure and recent colonization history of Oregon threespine stickleback determined using restriction‐site associated DNA‐sequencing

  2013cites this paper
• Combining next-generation sequencing and online databases for microsatellite development in non-model organisms

  2013cites this paper
• Développement et utilisation d'une puce de capture d'exons pour l'étude à large spectre de régions génomiques divergentes entre populations sympatriques de grand Corégone (Coregonus clupeaformis)

  2013cites this paper
• Genomic rearrangements and the evolution of clusters of locally adaptive loci

  2013cites this paper
• Genomic distribution of AFLP markers relative to gene locations for different eukaryotic species

  2013cites this paper
• Genome‐wide patterns of divergence and gene flow across a butterfly radiation

  2013cites this paper
• THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION‐WITH‐GENE‐FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

  2013cites this paper
• Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)

  2013influential citation
• Natural Selection and Neutral Evolution Jointly Drive Population Divergence between Alpine and Lowland Ecotypes of the Allopolyploid Plant Anemone multifida (Ranunculaceae)

  2013cites this paper
• Geographic Mode of Speciation and Genomic Divergence

  2013cites this paper
• Molecular genetics and genomics generate new insights into invertebrate pest invasions

  2013cites this paper
• Patterns of Transcriptome Divergence in the Male Accessory Gland of Two Closely Related Species of Field Crickets

  2013cites this paper
• When History Repeats Itself: Exploring the Genetic Architecture of Host-Plant Adaptation in Two Closely Related Lepidopteran Species

  2013cites this paper
• The consequences of genomic architecture on ecological speciation in postglacial fishes

  2013cites this paper
• The Population Genomics of Repeated Evolution in the Blind Cavefish Astyanax mexicanus

  2013cites this paper
• A phylogeographic, ecological and genomic analysis of the recent range expansion of the wasp spider Argiope bruennichi

  2013cites this paper
• Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis)

  2013cites this paper
• DIVERGENCE IS FOCUSED ON FEW GENOMIC REGIONS EARLY IN SPECIATION: INCIPIENT SPECIATION OF SUNFLOWER ECOTYPES

  2013cites this paper
• Genomic Studies of Adaptation in Natural Populations

  2013cites this paper
• Genomic islands of divergence are not affected by geography of speciation in sunflowers

  2013cites this paper
• Genome-scale data and the genetics of speciation

  2013cites this paper