Effects of cover crop in an apple orchard on microbial community composition, networks, and potential genes involved with degradation of crop residues in soil

No abstract is available for this paper.

• Publication year

  2018

• Venue

  Biology and Fertility of Soils

• Publication date

  2018-07-07

• Fields of study

  Agricultural and Food Sciences, Biology, Environmental Science

• Identifiers
  DOI 10.1007/s00374-018-1298-1
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

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• Soil bacteria show different tolerance ranges to an unprecedented disturbance

  2018cited by this paper
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  2017cited by this paper
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  2017cited by this paper
• Making big data smart—how to use metagenomics to understand soil quality

  2017cited by this paper
• Temporal variability of soil management effects on soil hydrological properties, runoff and erosion at the field scale in a hillslope vineyard, North-West Italy

  2017cited by this paper
• Analysis of soil microbial communities based on amplicon sequencing of marker genes

  2017cited by this paper
• Cover cropping frequency is the main driver of soil microbial changes during six years of organic vegetable production

  2017cited by this paper
• Rice husk biochar impacts soil phosphorous availability, phosphatase activities and bacterial community characteristics in three different soil types

  2017cited by this paper
• Long-term fertilisation regimes affect the composition of the alkaline phosphomonoesterase encoding microbial community of a vertisol and its derivative soil fractions

  2017cited by this paper
• Soil enzyme activity: a brief history and biochemistry as a basis for appropriate interpretations and meta-analysis

  2017cited by this paper
• Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria

  2017cited by this paper
• Complete Genome Sequence of Faecalibacterium prausnitzii Isolated from the Gut of a Healthy Indian Adult

  2017cited by this paper
• Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

  2016influential reference
• Mechanisms involved in xyloglucan catabolism by the cellulosome-producing bacterium Ruminiclostridium cellulolyticum

  2016cited by this paper
• Molecular Detection and Environment-Specific Diversity of Glycosyl Hydrolase Family 1 β-Glucosidase in Different Habitats

  2016cited by this paper
• Temperature effects on soil organic carbon, soil labile organic carbon fractions, and soil enzyme activities under long-term fertilization regimes

  2016cited by this paper
• The legacy effect of cover crops on soil fungal populations in a cereal rotation

  2016cited by this paper
• The sapro-rhizosphere : Carbon flow from saprotrophic fungi into fungus-feeding bacteria

  2016cited by this paper
• Changes in the soil microbial community after reductive soil disinfestation and cucumber seedling cultivation

  2016cited by this paper
• Bacterial alkaline phosphomonoesterase in the rhizospheres of plants grown in Chilean extreme environments

  2016cited by this paper
• Organic farming induces changes in soil microbiota that affect agro-ecosystem functions

  2016cited by this paper
• Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

  2016cited by this paper
• Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management

  2016cited by this paper
• Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil.

  2016cited by this paper
• Cover crops prevent the deleterious effect of nitrogen fertilisation on bacterial diversity by maintaining the carbon content of ploughed soil

  2016influential reference
• Shifts in indigenous microbial communities during the anaerobic degradation of pentachlorophenol in upland and paddy soils from southern China

  2016cited by this paper
• Determinants of bacterial communities in Canadian agroforestry systems.

  2016cited by this paper
• Reduced nitrogen leaching by intercropping maize with red fescue on sandy soils in North Europe: a combined field and modeling study

  2015cited by this paper
• Rhizospheric fungi of Panax notoginseng: diversity and antagonism to host phytopathogens

  2015cited by this paper
• Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

  2015cited by this paper
• Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere

  2015cited by this paper
• Soil properties and apricot growth under intercropping and mulching with erect milk vetch in the loess hilly-gully region

  2015cited by this paper
• Impact of inorganic nitrogen additions on microbes in biological soil crusts

  2015cited by this paper
• Mulching practices altered soil bacterial community structure and improved orchard productivity and apple quality after five growing seasons

  2014cited by this paper
• Bacterial community structures in rhizosphere microsites of ryegrass (Lolium perenne var. Nui) as revealed by pyrosequencing

  2014cited by this paper
• Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

  2014cited by this paper
• Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction.

  2013influential reference
• Bacterial communities in soil mimic patterns of vegetative succession and ecosystem climax but are resilient to change between seasons

  2013cited by this paper
• Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

  2013cited by this paper
• Evidence that arbuscular mycorrhizal and phosphate-solubilizing fungi alleviate NaCl stress in the halophyte Kosteletzkya virginica: nutrient uptake and ion distribution within root tissues

  2013cited by this paper
• Ecology of Agriculture

  2013cited by this paper
• Soil bacterial communities shaped by geochemical factors and land use in a less-explored area, Tibetan Plateau

  2013cited by this paper
• Soil-Borne Bacterial Structure and Diversity Does Not Reflect Community Activity in Pampa Biome

  2013cited by this paper
• UPARSE: highly accurate OTU sequences from microbial amplicon reads

  2013influential reference
• Fungal networks in yield-invigorating and -debilitating soils induced by prolonged potato monoculture.

  2013cited by this paper
• Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

  2013cited by this paper
• Ascomycota Members Dominate Fungal Communities during Straw Residue Decomposition in Arable Soil

  2013cited by this paper
• Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

  2012cited by this paper
• Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

  2012cited by this paper
• Soil enzymology: classical and molecular approaches

  2012cited by this paper
• Influence of geogenic factors on microbial communities in metallogenic Australian soils

  2012cited by this paper
• FLASH: fast length adjustment of short reads to improve genome assemblies

  2011influential reference
• Defining seasonal marine microbial community dynamics

  2011cited by this paper
• Metagenomic biomarker discovery and explanation

  2011cited by this paper
• Using network analysis to explore co-occurrence patterns in soil microbial communities

  2011cited by this paper
• Interactive influences of climate and parent material on soil microbial community structure in Bornean tropical forest ecosystems

  2011cited by this paper
• Fungi mediate long term sequestration of carbon and nitrogen in soil through their priming effect

  2011cited by this paper
• Centrality measures and the importance of generalist species in pollination networks

  2010cited by this paper
• Transcriptomic Analyses of Xylan Degradation by Prevotella bryantii and Insights into Energy Acquisition by Xylanolytic Bacteroidetes*

  2010cited by this paper
• Molecular detection and diversity of xylanase genes in alpine tundra soil

  2010cited by this paper
• Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

  2010cited by this paper
• Soil fungal communities as indicators for replanting new peach orchards in intensively cultivated areas

  2010cited by this paper
• ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010cited by this paper
• The architecture of mutualistic networks minimizes competition and increases biodiversity

  2009cited by this paper
• Diversity of soil and rhizosphere fungi under Araucaria bidwillii (Bunya pine) at an Australian tropical montane rainforest site

  2009cited by this paper
• Cover crops in Victorian apple orchards: Effects on production, natural enemies and pests across a season

  2009cited by this paper
• Microbial community structure and its functional implications

  2009cited by this paper
• Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

  2008cited by this paper
• Spatial and temporal changes to the water regime of a Mediterranean vineyard due to the adoption of cover cropping

  2008cited by this paper
• Cover crops influence soil properties and tree performance in an organic apple (Malus domestica Borkh) orchard in northern Patagonia

  2007cited by this paper
• Molecular analysis of fungal communities and laccase genes in decomposing litter reveals differences among forest types but no impact of nitrogen deposition.

  2007cited by this paper
• Toward an ecological classification of soil bacteria.

  2007cited by this paper
• The igraph software package for complex network research

  2006influential reference
• Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems

  2006cited by this paper
• Antagonism between bacteria and fungi: substrate competition and a possible tradeoff between fungal growth and tolerance towards bacteria

  2006cited by this paper
• Orchard floor management practices that maintain vegetative or biomass groundcover stimulate soil microbial activity and alter soil microbial community composition

  2005cited by this paper
• Living in a fungal world: impact of fungi on soil bacterial niche development.

  2005influential reference
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004influential reference
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.

  2003cited by this paper
• Interactions between stream fungi and bacteria associated with decomposing leaf litter at different levels of nutrient availability

  2003cited by this paper
• Influence of a grass layer on vineyard soil temperature

  2000cited by this paper
• Bacterial diversity in agroecosystems

  1999cited by this paper
• 11 – Soil Microbial Communities and Carbon Flow in Agroecosystems

  1997cited by this paper
• Ecology in agriculture

  1997cited by this paper
• Impact of soil management systems on organic dwarf apple orchards and soil aggregate stability, bulk density, temperature and water content

  1996cited by this paper
• Structure and development of fungal communities in beech logs four and a half years after felling

  1988cited by this paper
• Xylan-digesting bacteria from the rumen of sheep fed maize straw diets

  1985cited by this paper
• Decomposition of root litter and some factors regulating the process: long-term root litter decomposition in a scots pine forest

  1984cited by this paper
• Total Carbon, Organic Carbon, and Organic Matter

  1983cited by this paper
• Total Carbon, Organic Carbon, and Organic Matter 1

  1982cited by this paper
• Soil enzymology.

  1977cited by this paper
• A modified single solution method for the determination of phosphate in natural waters

  1962cited by this paper

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  2025cites this paper
• The role of fungal keystone taxa in soil multifunctionality across subtropical forests

  2025cites this paper
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  2025cites this paper
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  2025cites this paper
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  2025cites this paper
• Integrated metagenomic and metabolomic analyses reveal that nitrogen fertilizer reduction combined with biochar application improves the soil microenvironment of Phoebe bournei seedlings.

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• Elevated hydrolase activity rather than oxidase activity enhances the accumulation of organic matter in black soil under maize stover retention

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  2024cites this paper
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  2023cites this paper
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  2022cites this paper
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  2021cites this paper
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  2021cites this paper
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  2021cites this paper
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  2021cites this paper
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  2021cites this paper
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  2021cites this paper
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  2020influential citation
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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