Active microorganisms in forest soils differ from the total community yet are shaped by the same environmental factors: the influence of pH and soil moisture.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  FEMS Microbiology Ecology

• Publication date

  2016-08-15

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/femsec/fiw149PMID 27387909
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Using Multivariate Statistics

  2016influential reference
• Soil bacterial communities are shaped by temporal and environmental filtering: evidence from a long-term chronosequence.

  2015cited by this paper
• Differential responses of total and active soil microbial communities to long-term experimental N deposition

  2015cited by this paper
• Microbial composition alters the response of litter decomposition to environmental change.

  2015cited by this paper
• Assembly of Active Bacterial and Fungal Communities Along a Natural Environmental Gradient

  2015cited by this paper
• Microbial functional diversity enhances predictive models linking environmental parameters to ecosystem properties.

  2015cited by this paper
• Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.

  2015cited by this paper
• Dispersal limitation structures fungal community assembly in a long-term glacial chronosequence.

  2014cited by this paper
• Does the chemical nature of soil carbon drive the structure and functioning of soil microbial communities

  2014influential reference
• Is bacterial moisture niche a good predictor of shifts in community composition under long-term drought?

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014cited by this paper
• Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform

  2013cited by this paper
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  2013cited by this paper
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  2013cited by this paper
• Ribosomal Database Project: data and tools for high throughput rRNA analysis

  2013cited by this paper
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  2012cited by this paper
• Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

  2012cited by this paper
• Molecular ecological network analyses

  2012cited by this paper
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  2012cited by this paper
• Integrating microbial ecology into ecosystem models: challenges and priorities

  2012cited by this paper
• A cross-seasonal comparison of active and total bacterial community composition in Arctic tundra soil using bromodeoxyuridine labeling

  2011cited by this paper
• Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

  2011influential reference
• Microbial seed banks: the ecological and evolutionary implications of dormancy

  2011cited by this paper
• UCHIME improves sensitivity and speed of chimera detection

  2011cited by this paper
• Decomposing capacity of fungi commonly detected in Pinus sylvestris needle litter

  2011cited by this paper
• Soil bacterial and fungal communities across a pH gradient in an arable soil

  2010cited by this paper
• Real-time DNA sequencing from single polymerase molecules.

  2010cited by this paper
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  2010cited by this paper
• Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

  2010cited by this paper
• Real-Time DNA Sequencing from Single Polymerase Molecules

  2009cited by this paper
• Testing the functional significance of microbial community composition.

  2009cited by this paper
• Inter-specific Interactions Between Carbon-limited Soil Bacteria Affect Behavior and Gene Expression

  2009cited by this paper
• Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

  2009influential reference
• Alteration of soil organic matter pools and aggregation in semi‐arid steppe topsoils as driven by organic matter input

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  2007cited by this paper
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  2007cited by this paper
• Toward an ecological classification of soil bacteria.

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• Testing the functional significance of microbial composition in natural communities.

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  2006cited by this paper
• Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

  2006influential reference
• A phylogenetic overview of the Agaricomycotina

  2006cited by this paper
• The diversity and biogeography of soil bacterial communities.

  2006cited by this paper
• A comparison of DNA- and RNA-based clone libraries from the same marine bacterioplankton community.

  2005cited by this paper
• Composition of the microbial communities in the mineral soil under different types of natural forest

  2005cited by this paper
• Microbial diversity and soil functions

  2003cited by this paper
• Active microbial RNA turnover in a grassland soil estimated using a 13CO2 spike

  2003cited by this paper
• Molecular and functional diversity in soil micro-organisms

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• A new method for non-parametric multivariate analysis of variance in ecology

  2001cited by this paper
• Spatial distribution of fungal and bacterial biomass in southern Ohio hardwood forest soils: scale dependency and landscape patterns

  1999cited by this paper
• A systematic assessment of Morchella using RFLP analysis of the 28S ribosomal RNA gene

  1994cited by this paper
• Variation in Forest Soil Properties along a Great Lakes Air Pollution Gradient

  1991cited by this paper
• Use of multivariate methods in forest research site selection

  1991cited by this paper
• Nucleic acid techniques in bacterial systematics

  1991cited by this paper
• 16S/23S rRNA sequencing

  1991cited by this paper
• Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species

  1990cited by this paper
• Nonparametric estimation of the number of classes in a population

  1984cited by this paper
• Using Multivariate Statistics

  1983influential reference
• A general method applicable to the search for similarities in the amino acid sequence of two proteins.

  1970cited by this paper
• Deciduous Forests of Eastern north America

  1952cited by this paper

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