2.1 Å resolution refined structure of a TATA box-binding protein (TBP)

No abstract is available for this paper.

• Publication year

  1994

• Venue

  Nature Structural Biology

• Publication date

  1994-09-01

• Fields of study

  Biology, Medicine, Materials Science

• Identifiers
  DOI 10.1038/nsb0994-621PMID 7634102
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Involvement of the basic repeat domain of TATA-binding protein (TBP) in transcription by RNA polymerases I, II, and III.

  1994cited by this paper
• TATA-binding protein and nuclear differentiation in Tetrahymena thermophila

  1994cited by this paper
• Effects of activation-defective TBP mutations on transcription initiation in yeast

  1994cited by this paper
• Molecular cloning of Drosophila TFIID subunits

  1994cited by this paper
• Interaction between the N-terminal domain of the 230-kDa subunit and the TATA box-binding subunit of TFIID negatively regulates TATA-box binding.

  1994cited by this paper
• 1.9 Å resolution refined structure of TBP recognizing the minor groove of TATAAAAG

  1994cited by this paper
• TBP, a universal eukaryotic transcription factor?

  1993cited by this paper
• Initiation of transcription by RNA polymerase II: a multi-step process.

  1993cited by this paper
• Cooperative DNA binding of p53 with TFIID (TBP): a possible mechanism for transcriptional activation.

  1993cited by this paper
• A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila

  1993cited by this paper
• Molecular cloning and characterization of dTAFII30 alpha and dTAFII30 beta: two small subunits of Drosophila TFIID.

  1993cited by this paper
• Opening the gateway

  1993cited by this paper
• Genetic and biochemical analyses of yeast TATA-binding protein mutants.

  1993cited by this paper
• Characterisation of the gene encoding an unusually divergent TATA-binding protein (TBP) from the extremely A+T-rich human malaria parasite Plasmodium falciparum.

  1993cited by this paper
• The gene for the TATA box-binding protein of Onchocerca volvulus.

  1993cited by this paper
• Co-crystal structure of TBP recognizing the minor groove of a TATA element

  1993cited by this paper
• Functional and biochemical interaction of the HTLV‐I Tax1 transactivator with TBP.

  1993cited by this paper
• Transcription. Opening the gateway.

  1993cited by this paper
• Crystal structure of yeast TATA-binding protein and model for interaction with DNA.

  1993cited by this paper
• Residues in the TATA-binding protein required to mediate a transcriptional response to retinoic acid in EC cells

  1993cited by this paper
• Functional interaction of the v-Rel and c-Rel oncoproteins with the TATA-binding protein and association with transcription factor IIB

  1993cited by this paper
• Cloning and expression of Drosophila TAFII60 and human TAFII70 reveal conserved interactions with other subunits of TFIID.

  1993cited by this paper
• Regional codon randomization: defining a TATA-binding protein surface required for RNA polymerase III transcription.

  1993cited by this paper
• Factors (TAFs) required for activated transcription interact with TATA box-binding protein conserved core domain.

  1993cited by this paper
• Direct interaction between the transcriptional activation domain of human p53 and the TATA box-binding protein.

  1993cited by this paper
• Association between proto-oncoprotein Rel and TATA-binding protein mediates transcriptional activation by NF-κB

  1993cited by this paper
• Effects of multiple mutations at the conserved TATA sequence of bacteriophage SP6 promoter on transcription efficiency.

  1993cited by this paper
• Wild-type but not mutant p53 can repress transcription initiation in vitro by interfering with the binding of basal transcription factors to the TATA motif.

  1993cited by this paper
• p53 binds to the TATA-binding protein-TATA complex.

  1993cited by this paper
• Cloning and properties of the Caenorhabditis elegans TATA-box-binding protein.

  1993cited by this paper
• Wheat TFIID TATA binding protein.

  1993cited by this paper
• Regulation of RNA polymerase II transcription.

  1993cited by this paper
• The p53 activation domain binds the TATA box-binding polypeptide in Holo-TFIID, and a neighboring p53 domain inhibits transcription

  1993cited by this paper
• Crystal structure of a yeast TBP/TATA-box complex

  1993cited by this paper
• Isolation and characterization of a cDNA clone encoding the TATA box-binding protein (TFIID) from wheat

  1992cited by this paper
• The acidic activator GAL4-AH can stimulate polymerase II transcription by promoting assembly of a closed complex requiring TFIID and TFIIA.

  1992cited by this paper
• Crystal structure of TFIID TATA-box binding protein

  1992cited by this paper
• Assessment of protein models with three-dimensional profiles

  1992cited by this paper
• A suppressor of TBP mutations encodes an RNA polymerase III transcription factor with homology to TFIIB.

  1992cited by this paper
• Factors involved in specific transcription by mammalian RNA polymerase II: purification and analysis of transcription factor IIA and identification of transcription factor IIJ

  1992cited by this paper
• DNA-binding properties of cloned TATA-binding protein from potato tubers

  1992cited by this paper
• The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells.

  1992cited by this paper
• Chromatin as an essential part of the transcriptional mechanim

  1992cited by this paper
• Cloning and expression of the Acanthamoeba castellanii gene encoding transcription factor TFIID.

  1992cited by this paper
• SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae.

  1992cited by this paper
• Wild-type p53 binds to the TATA-binding protein and represses transcription.

  1992cited by this paper
• A yeast TFIIB-related factor involved in RNA polymerase III transcription.

  1992cited by this paper
• The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1.

  1992cited by this paper
• Variants of the TATA-binding protein can distinguish subsets of RNA polymerase I, II, and III promoters.

  1992cited by this paper
• Dr1, a TATA-binding protein-associated phosphoprotein and inhibitor of class II gene transcription.

  1992cited by this paper
• TFIIA induces conformational changes in TFIID via interactions with the basic repeat

  1992cited by this paper
• The human cytomegalovirus 80-kilodalton but not the 72-kilodalton immediate-early protein transactivates heterologous promoters in a TATA box-dependent mechanism and interacts directly with TFIID

  1992cited by this paper
• Yeast and human TFIIDs are interchangeable for the response to acidic transcriptional activators in vitro.

  1992cited by this paper
• Specific interaction between the nonphosphorylated form of RNA polymerase II and the TATA-binding protein.

  1992cited by this paper
• Kinetic analysis of yeast TFIID-TATA box complex formation suggests a multi-step pathway.

  1992cited by this paper
• Plant transcription factors: present knowledge and future challenges.

  1992cited by this paper
• Two different cDNAs encoding TFIID proteins of maize

  1992cited by this paper
• Transcription factor IID mutants defective for interaction with transcription factor IIA.

  1992cited by this paper
• Isolation of two genes that encode subunits of the yeast transcription factor IIA.

  1992cited by this paper
• Polymerase II promoter activation: closed complex formation and ATP-driven start site opening.

  1992cited by this paper
• 47 Analysis of SPT Genes: A Genetic Approach toward Analysis of TFIID, Histones, and Other Transcription Factors of Yeast

  1992cited by this paper
• Eukaryotic coactivators associated with the TATA box binding protein.

  1992cited by this paper
• 27 Adenovirus E1A trans -Activation: Understanding It Will Require Learning How the General Transcription Factors Function

  1992cited by this paper
• 8 Protein-Protein Interactions as Critical Determinants of Regulated Initiation and Termination of Transcription

  1992cited by this paper
• RNA polymerase III (C) and its transcription factors.

  1991cited by this paper
• Adenovirus E1A activation domain binds the basic repeat in the TATA box transcription factor.

  1991cited by this paper
• Family of proteins that interact with TFIID and regulate promoter activity.

  1991cited by this paper
• A program to produce both detailed and schematic plots of protein structures

  1991cited by this paper
• Activation of class II gene transcription by regulatory factors is potentiated by a novel activity.

  1991cited by this paper
• Dominant negative mutations in yeast TFIID define a bipartite DNA-binding region.

  1991cited by this paper
• Direct interaction between adenovirus E1A protein and the TATA box binding transcription factor IID.

  1991cited by this paper
• A method to identify protein sequences that fold into a known three-dimensional structure.

  1991cited by this paper
• The Zta trans-activator protein stabilizes TFIID association with promoter DNA by direct protein-protein interaction.

  1991cited by this paper
• Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons

  1991cited by this paper
• The complexities of eukaryotic transcription initiation: regulation of preinitiation complex assembly.

  1991cited by this paper
• Direct and selective binding of an acidic transcriptional activation domain to the TATA-box factor TFIID

  1990cited by this paper
• Activators and targets

  1990cited by this paper
• Striking conservation of TFIID in Schizosaccharomyces pombe and Saccharomyces cerevisiae

  1990cited by this paper
• Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID)

  1990cited by this paper
• Arabidopsis thaliana contains two genes for TFIID

  1990cited by this paper
• Cloning of a transcriptionally active human TATA binding factor.

  1990cited by this paper
• cDNA clone encoding Drosophila transcription factor TFIID.

  1990cited by this paper
• Functional domains and upstream activation properties of cloned human TATA binding protein.

  1990cited by this paper
• The structure of protein-protein recognition sites.

  1990cited by this paper
• Cloning of the Schizosaccharomyces pombe TFIID gene reveals a strong conservation of functional domains present in Saccharomyces cerevisiae TFIID.

  1990cited by this paper
• Isolation and characterization of the Drosophila gene encoding the TATA box binding protein, TFIID.

  1990cited by this paper
• Yeast TATA-box transcription factor gene.

  1989cited by this paper
• Initiation of transcription by RNA polymerase II.

  1989cited by this paper
• Cloning and structure of a yeast gene encoding a general transcription initiation factor TFIID that binds to the TATA box

  1989cited by this paper
• Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences.

  1989cited by this paper
• Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering.

  1989cited by this paper
• Cloning of the gene encoding the yeast protein BTF1Y, which can substitute for the human TATA box-binding factor.

  1989cited by this paper
• Isolation of the gene encoding the yeast TATA binding protein TFIID: a gene identical to the SPT15 suppressor of Ty element insertions.

  1989cited by this paper
• Five intermediate complexes in transcription initiation by RNA polymerase II.

  1989cited by this paper
• Calculating the electrostatic potential of molecules in solution: Method and error assessment

  1988cited by this paper
• Physical analysis of transcription preinitiation complex assembly on a class II gene promoter.

  1988cited by this paper
• Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II.

  1987cited by this paper
• Analysis of the yeast SPT3 gene and identification of its product, a positive regulator of Ty transcription.

  1986cited by this paper
• Eukaryotic RNA polymerases.

  1985cited by this paper
• Transcription of adenovirus-2 major late promoter inhibited by monoclonal antibody directed against RNA polymerases IIO and IIA.

  1983cited by this paper

• From the disruption of RNA metabolism to the targeting of RNA‐binding proteins: The case of polyglutamine spinocerebellar ataxias

  2023cites this paper
• Role of the TATA-box binding protein (TBP) and associated family members in transcription regulation.

  2022cites this paper
• Structural basis of the complete poxvirus transcription initiation process

  2021cites this paper
• The TATA‐binding Protein DNA‐binding domain of eukaryotic parasites is a potentially druggable target

  2020cites this paper
• TBPL2/TFIIA complex establishes the maternal transcriptome by an oocyte-specific promoter usage

  2020cites this paper
• Investigating TBP CAG/CAA trinucleotide repeat expansions in a Taiwanese cohort with ALS

  2020cites this paper
• Infrared spectroscopic observation of a G-C+ Hoogsteen base pair in the DNA:TATA box binding protein complex under solution conditions.

  2019cites this paper
• Notch Signaling: From Neurogenesis to Neurodegeneration

  2019cites this paper
• Molecular Mechanisms and Therapeutics for SCA17

  2019cites this paper
• Integrating co‐evolutionary signals and other properties of residue pairs to distinguish biological interfaces from crystal contacts

  2018cites this paper
• Piperine ameliorates SCA17 neuropathology by reducing ER stress

  2018cites this paper
• DEPENDENCE OF HOMO–LUMO GAP OF DNA BASE PAIR STEPS ON TWIST ANGLE: A DENSITY FUNCTIONAL APPROACH

  2018cites this paper
• Structural basis of gene regulation by the Grainyhead/CP2 transcription factor family

  2018cites this paper
• Synergistic Toxicity of Polyglutamine-Expanded TATA-Binding Protein in Glia and Neuronal Cells: Therapeutic Implications for Spinocerebellar Ataxia 17

  2017cites this paper
• TATA Box Insertion Provides a Selection Mechanism Underpinning Adaptations to Fe Deficiency1[OPEN]

  2016cites this paper
• Affinity and competition for TBP are molecular determinants of gene expression noise

  2016cites this paper
• Molecular mechanisms underlying Spinocerebellar Ataxia 17 (SCA17) pathogenesis

  2016cites this paper
• Role of indirect readout mechanism in TATA box binding protein–DNA interaction

  2015cites this paper
• Identification and analysis of regulatory elements in the germin and germin-like proteins family promoters in rice

  2015cites this paper
• The three-dimensional context of a double helix determines the fluorescence of the internucleoside-tethered pair of fluorophores.

  2013cites this paper
• TBP-related factors: a paradigm of diversity in transcription initiation

  2011cites this paper
• On the consequences of placing amino groups at the TBP–DNA interface. Does TATA really matter?

  2009cites this paper
• Differential stability of TATA box binding proteins from archaea with different optimal growth temperatures.

  2009cites this paper
• Protein Kinase CK2 in Health and Disease

  2009cites this paper
• DNA and protein footprinting analysis of the modulation of DNA binding by the N-terminal domain of the Saccharomyces cerevisiae TATA binding protein.

  2007cites this paper
• Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding protein.

  2007cites this paper
• Structure and function in c-Myc and Grx 4 : two key proteins involved in transcriptional activation and oxidative stress

  2006influential citation
• General Cofactors: TFIID, Mediator and USA

  2006cites this paper
• Structure and function in c-Myc and Grx4: two key proteins involved in transcriptional activation and oxidative stress

  2006cites this paper
• The General Transcription Machinery and General Cofactors

  2006cites this paper
• Crystal structure of TBP‐interacting protein (Tk‐TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA‐DNA

  2006cites this paper
• Self-association of the Amino-terminal Domain of the Yeast TATA-binding Protein*

  2004cites this paper
• Origins of protein stability revealed by comparing crystal structures of TATA binding proteins.

  2004cites this paper
• PROTEIN-PROTEIN INTERACTION MAP OF Arabidopsis thaliana GENERAL TRANSCRIPTION FACTORS A, B, D, E, AND F

  2003cites this paper
• Solution structure and interdomain interactions of the Saccharomyces cerevisiae "TATA binding protein" (TBP) probed by radiolytic protein footprinting.

  2003cites this paper
• Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes.

  2003cites this paper
• Gal4-VP16 and Gal4-AH increase the orientational and axial specificity of TATA box recognition by TATA box binding protein.

  2002cites this paper
• Structural basis of macromolecular recognition.

  2002cites this paper
• Solution structural studies of the Saccharomyces cerevisiae TATA binding protein (TBP).

  2002cites this paper
• TATA binding protein-associated CK2 transduces DNA damage signals to the RNA polymerase III transcriptional machinery.

  2001cites this paper
• Site-specific cation binding mediates TATA binding protein-DNA interaction from a hyperthermophilic archaeon.

  2001cites this paper
• Mass spectrometry as a tool for protein crystallography.

  2001cites this paper
• A natural classification of ribonucleases.

  2001cites this paper
• Protein-DNA interactions in the initiation of transcription: The Role of Flexibility and Dynamics of the TATA Recognition Sequence and the TATA Box Binding Protein

  2001cites this paper
• Identification and characterization of AJ18, a novel zinc finger transcription factor expressed during skeletal development

  2001cites this paper
• The Binding Interaction of HMG-1 with the TATA-binding Protein/TATA Complex*

  2001cites this paper
• Electrospray ionization mass spectrometry of oligonucleotide complexes with drugs, metals, and proteins.

  2001cites this paper
• ADAPT: A molecular mechanics approach for studying the structural properties of long DNA sequences

  2000cites this paper
• Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.

  2000cites this paper
• Virtually unidirectional binding of TBP to the AdMLP TATA box within the quaternary complex with TFIIA and TFIIB.

  2000cites this paper
• Influence of HMG-1 and Adenovirus Oncoprotein E1A on Early Stages of Transcriptional Preinitiation Complex Assembly*

  2000cites this paper
• Control of gene expression through regulation of the TATA-binding protein.

  2000cites this paper
• TAFs revisited: more data reveal new twists and confirm old ideas.

  2000cites this paper
• Participation of the amino-terminal domain in the self-association of the full-length yeast TATA binding protein.

  2000cites this paper
• TATA element recognition by the TATA box-binding protein has been conserved throughout evolution.

  1999cites this paper
• Synergistic Transcriptional Activation by TATA-Binding Protein and hTAFII28 Requires Specific Amino Acids of the hTAFII28 Histone Fold

  1999cites this paper
• The TATA-binding protein from Saccharomyces cerevisiae oligomerizes in solution at micromolar concentrations to form tetramers and octamers.

  1999cites this paper
• A role for TBP dimerization in preventing unregulated gene expression.

  1999cites this paper
• Differential sensitivity of transcription factors to mustard-damaged DNA.

  1999cites this paper
• Structural features of protein-nucleic acid recognition sites.

  1999cites this paper
• been conserved throughout evolution TATA element recognition by the TATA box-binding protein has

  1999cites this paper
• X-ray crystallographic studies of eukaryotic transcription factors.

  1998cites this paper
• Polarity of transcription on Pol II and archaeal promoters: where is the "one-way sign" and how is it read?

  1998cites this paper
• Contributions of the TATA box sequence to rate-limiting steps in transcription initiation by RNA polymerase II.

  1998cites this paper
• Molecular Genetics of the RNA Polymerase II General Transcriptional Machinery

  1998cites this paper
• Minor groove-binding architectural proteins: structure, function, and DNA recognition.

  1998cites this paper
• Model of the complex formed between the H2 domain of the TATA box binding protein and the L(281-301) fragment of the human transcription factor TFIIA.

  1998cites this paper
• Preinitation complex assembly: potentially a bumpy path.

  1998cites this paper
• DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding.

  1998cites this paper
• Control of gene expression in Plasmodium falciparum.

  1998cites this paper
• The RNA polymerase II general transcription factors: past, present, and future.

  1998cites this paper
• The transcriptional activity of a muscle-specific promoter depends critically on the structure of the TATA element and its binding protein.

  1997cites this paper
• Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions?

  1997cites this paper
• Critical Role of the Second Stirrup Region of the TATA-binding Protein for Transcriptional Activation Both in Yeast and Human*

  1997cites this paper
• Eukaryotic transcription factor-DNA complexes.

  1997cites this paper
• RNA polymerase II transcription initiation: a structural view.

  1997cites this paper
• Slow dimer dissociation of the TATA binding protein dictates the kinetics of DNA binding.

  1997cites this paper
• DNA recognition by beta-sheets.

  1997cites this paper
• Involvement of the transcription factor IID protein complex in gene activation by the N-terminal transactivation domain of the glucocorticoid receptor in vitro.

  1997cites this paper
• [Activation of transcription in eukaryotic cells: interactions between transcription factors and components of the basal transcriptional mechanism].

  1997cites this paper
• Dynamic interplay of TFIIA, TBP and TATA DNA.

  1997cites this paper
• Molecular and biological constraints on ligand-binding affinity and specificity.

  1997cites this paper
• Structural Studies of Eukaryotic Transcription Initiation

  1997cites this paper
• Activation de la transcription chez les eucaryotes: interactions entre les facteurs de transcription et les composants de la machinerie transcriptionnelle basale

  1997cites this paper
• DNA recognition by β‐sheets

  1997cites this paper
• Viewing the renal epithelium with the atomic force microscope.

  1996cites this paper
• The general transcription factors of RNA polymerase II.

  1996cites this paper
• Functional interaction of the c-Myc transactivation domain with the TATA binding protein: evidence for an induced fit model of transactivation domain folding.

  1996cites this paper
• Atomic force microscopy visualizes ATP-dependent dissociation of multimeric TATA-binding protein before translocation into the cell nucleus

  1996cites this paper
• The crystal structure of a hyperthermophilic archaeal TATA-box binding protein.

  1996cites this paper
• Characterization of the basal inhibitor of class II transcription NC2 from Saccharomyces cerevisiae.

  1996cites this paper
• Dimerization of TFIID When Not Bound to DNA

  1996cites this paper
• Trans-activation by the human aryl hydrocarbon receptor and aryl hydrocarbon receptor nuclear translocator proteins: direct interactions with basal transcription factors.

  1996cites this paper
• Biochemistry and structural biology of transcription factor IID (TFIID).

  1996cites this paper
• X-ray crystallographic studies of eukaryotic transcription initiation factors.

  1996cites this paper
• Structural similarity between TAFs and the heterotetrameric core of the histone octamer

  1996cites this paper
• High‐resolution structures of the bifunctional enzyme and transcriptional coactivator DCoH and its complex with a product analogue

  1996cites this paper
• DNA binding by TATA-box binding protein (TBP): a molecular dynamics computational study.

  1996cites this paper
• How proteins recognize the TATA box.

  1996cites this paper
• The TATA box binding protein.

  1996cites this paper