Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases.

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Trends in Ecology & Evolution

• Publication date

  2008-09-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.tree.2008.05.009PMID 18657880
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Superinfections can induce evolutionarily stable coexistence of pathogens

  2008cited by this paper
• Transmission-virulence trade-offs in vector-borne diseases.

  2008cited by this paper
• Mechanisms of pathogenesis and the evolution of parasite virulence

  2008cited by this paper
• On the evolution of reproductive restraint in malaria

  2008cited by this paper
• Multiple Infections, Immune Dynamics, and the Evolution of Virulence

  2008cited by this paper
• Modeling Within-Host Evolution of HIV: Mutation, Competition and Strain Replacement

  2007cited by this paper
• Pathogenesis, Virulence, and Infective Dose

  2007cited by this paper
• Evolution of virulence: triggering host inflammation allows invading pathogens to exclude competitors

  2007cited by this paper
• Evaluating the importance of within- and between-host selection pressures on the evolution of chronic pathogens.

  2007cited by this paper
• Is HIV-1 evolving to a less virulent form in humans?

  2007cited by this paper
• Evolution of parasite virulence when host responses cause disease

  2007cited by this paper
• VACCINATION, WITHIN‐HOST DYNAMICS, AND VIRULENCE EVOLUTION

  2006cited by this paper
• WITHIN‐HOST COMPETITION IN GENETICALLY DIVERSE MALARIA INFECTIONS: PARASITE VIRULENCE AND COMPETITIVE SUCCESS

  2006cited by this paper
• IMPERFECT VACCINES AND THE EVOLUTION OF PATHOGENS CAUSING ACUTE INFECTIONS IN VERTEBRATES

  2006cited by this paper
• Evolution of virulence: interdependence, constraints, and selection using nested models.

  2006cited by this paper
• Virulence and competitive ability in genetically diverse malaria infections.

  2005cited by this paper
• Evolutionary Causes and Consequences of Immunopathology

  2005cited by this paper
• Virus evolution within patients increases pathogenicity.

  2005cited by this paper
• Emergence of a Convex Trade‐Off between Transmission and Virulence

  2005cited by this paper
• Infection with Multiple Human Immunodeficiency Virus Type 1 Variants Is Associated with Faster Disease Progression

  2003cited by this paper
• Trade-offs and the evolution of virulence of microparasites: do details matter?

  2003cited by this paper
• A CONSIDERATION OF PATTERNS OF VIRULENCE ARISING FROM HOST‐PARASITE COEVOLUTION

  2003cited by this paper
• Virulence evolution and the timing of disease life-history events

  2003cited by this paper
• WITHIN‐HOST PARASITE DYNAMICS, EMERGING TRADE‐OFF, AND EVOLUTION OF VIRULENCE WITH IMMUNE SYSTEM

  2003cited by this paper
• WITHIN‐HOST POPULATION DYNAMICS AND THE EVOLUTION OF MICROPARASITES IN A HETEROGENEOUS HOST POPULATION

  2002cited by this paper
• Adaptive Dynamics of Infectious Diseases: List of Boxes

  2002cited by this paper
• The epidemiological consequences of optimisation of the individual host immune response

  2002cited by this paper
• Dieckmann,U., J. A. J. Metz, M. W. Sabelis, and K. Sigmund, editors. Adaptive Dynamics of Infectious Diseases: In Pursuit of Virulence Management. Cambridge Studies in Adaptive Dynamics, Cambridge University Press, Cambridge, UK.

  2002cited by this paper
• On the evolution of virulence and the relationship between various measures of mortality

  2002cited by this paper
• Modeling host-parasite coevolution: a nested approach based on mechanistic models.

  2002cited by this paper
• Adaptive Dynamics of Infectious Diseases: Dilemmas in Virulence Management

  2002cited by this paper
• HOST LIFE HISTORY AND THE EVOLUTION OF PARASITE VIRULENCE

  2001cited by this paper
• Imperfect vaccines and the evolution of pathogen virulence

  2001cited by this paper
• PARASITE TRANSMISSION MODES AND THE EVOLUTION OF VIRULENCE

  2001cited by this paper
• Evolution of parasite virulence against qualitative or quantitative host resistance

  2000cited by this paper
• The Mathematics of Infectious Diseases

  2000cited by this paper
• Selection for high and low virulence in the malaria parasite

  1999cited by this paper
• Coevolution of recovery ability and virulence

  1998cited by this paper
• Coevolution of recovery ability and virulence.

  1998cited by this paper
• Experimental evolution of parasites.

  1998cited by this paper
• (Meta)population dynamics of infectious diseases.

  1997cited by this paper
• The Major Transitions in Evolution

  1997cited by this paper
• Models of Parasite Virulence

  1996cited by this paper
• The Dynamics of Multiple Infection and the Evolution of Virulence

  1995cited by this paper
• Evolution of antigen drift/switching: continuously evading pathogens.

  1994cited by this paper
• Superinfection and the evolution of parasite virulence

  1994cited by this paper
• Within-Host Population Dynamics and the Evolution and Maintenance of Microparasite Virulence

  1994cited by this paper
• Diversity and virulence thresholds in AIDS.

  1994cited by this paper
• Superinfection and the evolution of parasite virulence.

  1994cited by this paper
• Short-sighted evolution and the virulence of pathogenic microorganisms.

  1994cited by this paper
• Mathematical studies of parasitic infection and immunity.

  1994cited by this paper
• Mutation and the evolution of virulence

  1994cited by this paper
• Intensive Care Medicine

  1992cited by this paper
• Optimal growth schedule of pathogens within a host: switching between lytic and latent cycles.

  1991cited by this paper
• The evolutionary dynamics of HIV-1 quasispecies and the development of immunodeficiency disease.

  1990cited by this paper
• Host-Parasite Relations, Vectors, and the Evolution of Disease Severity

  1983cited by this paper
• Coevolution of hosts and parasites

  1982cited by this paper

• Multiscale feedback drives viral evolution and epidemic dynamics

  2026cites this paper
• Co-circulation and co-infection: parasite interactions across scales.

  2026cites this paper
• Dynamic mean and variance of microparasite load give key insights into population dynamics and underlying mechanisms.

  2026cites this paper
• The effect of temperature and ash species on Hymenoscyphus fraxineus aggressiveness differs between northern and southern European populations

  2026cites this paper
• SIMPLICITY is an agent-based, multi-scale mathematical model to study SARS-CoV-2 intra- and between-host evolution

  2026cites this paper
• Longitudinal impacts of habitat fragmentation on Bartonella and hemotropic Mycoplasma dynamics in vampire bats

  2025cites this paper
• Dynamic interaction between transmission, within-host dynamics and mosquito density.

  2025cites this paper
• Quantitative Resistance Deployment Can Strengthen Epidemics in Perennial Plants by Selecting Maladapted Pathogen Strains

  2025cites this paper
• SARS-CoV-2 epidemiology, kinetics, and evolution: A narrative review

  2025cites this paper
• Dissecting transmission to understand parasite evolution

  2025cites this paper
• A multiscale framework integrating within-host infection kinetics with airborne transmission dynamics

  2025cites this paper
• Variability in infection dynamics emerges from the interplay between unique host and pathogen characteristics

  2025cites this paper
• Apollo: a comprehensive GPU-powered within-host simulator for viral evolution and infection dynamics across population, tissue, and cell

  2025cites this paper
• Host prior exposure augments heterogeneity in gene expression in both host and pathogen during in vivo infection

  2025cites this paper
• Linking within-host immune dynamics to between-host transmission and reinfection risk.

  2025cites this paper
• Multiscale Modeling of Vector-Borne Diseases: The Role of Dose-Dependent Transmission

  2025influential citation
• SIMPLICITY: an agent-based, multi-scale mathematical model to study SARS-CoV-2 intra- and between-host evolution

  2025cites this paper
• Host responses and viral traits interact to shape the impacts of climate warming on highly pathogenic avian influenza in migratory waterfowl

  2025cites this paper
• Risk of death during acute infection is accelerating across diverse host-pathogen systems and consistent with multiple models of host-pathogen interaction

  2025cites this paper
• Within- and between-host evolutionary effects on viral oncogenicity

  2025cites this paper
• Viral evolution during primary infection in immunocompromised hosts

  2025cites this paper
• Host constraints on viral recombination and emergence

  2025cites this paper
• Distinguishing among evolutionary and ecological processes shaping microbiome dynamics

  2025cites this paper
• Immunological feedback loops generate parasite persistence thresholds that explain variation in infection duration

  2024cites this paper
• Ecology and Evolution of the Social Microbiome

  2024cites this paper
• Slipping through the cracks: Challenges and prospects for investigating fungal plant disease complexes

  2024cites this paper
• Apollo: A comprehensive GPU-powered within-host simulator for viral evolution and infection dynamics across population, tissue, and cell

  2024cites this paper
• e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology

  2024cites this paper
• Self-similarity in pandemic spread and fractal containment policies

  2024cites this paper
• Interspecific interactions among parasites in multiple infections.

  2024cites this paper
• Acclimation to warmer temperatures can protect host populations from both further heat stress and the potential invasion of pathogens

  2024cites this paper
• Impact of heterogeneity on infection probability: Insights from single-hit dose-response models.

  2024cites this paper
• On the Cause and Consequences of Coinfection: A General Mechanistic Framework of Within‐Host Parasite Competition

  2024cites this paper
• Extinctions Caused by Host-Range Expansion

  2024cites this paper
• Phylogenetic signatures reveal multilevel selection and fitness costs in SARS-CoV-2

  2024cites this paper
• Accurate stochastic simulation algorithm for multiscale models of infectious diseases.

  2024cites this paper
• High virulence is associated with pathogen spreadability in a songbird–bacterial system

  2023cites this paper
• Plant Virus Adaptation to New Hosts: A Multi-scale Approach.

  2023cites this paper
• An environmentally-driven two-strain mutualistic coinfection model with coupling transmission in vivo and vitro and humoral immunity

  2023cites this paper
• Within- and between-host dynamics of producer and non-producer pathogens

  2023influential citation
• Commentary: Infectious disease — the ecological theater and the evolutionary play

  2023cites this paper
• Dynamical behavior of a coupling SEIR epidemic model with transmission in body and vitro, incubation and environmental effects.

  2023cites this paper
• Efficient coupling of within-and between-host infectious disease dynamics.

  2023influential citation
• The Universal Theory for Multiscale Modelling of Infectious Disease Dynamics

  2023cites this paper
• The uncertain role of substandard and falsified medicines in the emergence and spread of antimicrobial resistance

  2023cites this paper
• Mathematical methods for scaling from within-host to population-scale in infectious disease systems.

  2023cites this paper
• Short-term temperature fluctuations increase disease in a Daphnia-parasite infectious disease system

  2023cites this paper
• Multiple infection theory rather than ‘socio‐virology’? A commentary on Leeks et al. 2023

  2023cites this paper
• Correlation of viral loads in disease transmission could affect early estimates of the reproduction number

  2023cites this paper
• Design Patterns for Multilevel Modeling and Simulation

  2023cites this paper
• A nested model with boosting and waning of immunity from Tilapia Lake Virus infection with distributed resistance to pathogens carrier-state

  2023cites this paper
• Interspecific host competition and parasite virulence evolution

  2023cites this paper
• Evolutionary stability of antigenically escaping viruses

  2023cites this paper
• Infection burdens and virulence under heat stress: ecological and evolutionary considerations

  2023cites this paper
• Death is overrated: the potential role of detection in driving virulence evolution

  2023cites this paper
• A review of multilevel modeling and simulation for human mobility and behavior

  2023cites this paper
• COVID-19 dynamics and immune response: Linking within-host and between-host dynamics

  2023cites this paper
• Diet- and salinity-induced modifications of the gut microbiota are associated with differential physiological responses to ranavirus infection in Rana sylvatica

  2023cites this paper
• Modelling and Control of Epidemics Across Scales

  2022influential citation
• Correlation of viral loads in disease transmission chains could bias early estimates of the reproduction number

  2022cites this paper
• The scale of competition impacts parasite virulence evolution

  2022cites this paper
• Thermal acclimation to warmer temperatures can protect host populations from both further heat stress and the potential invasion of pathogens

  2022influential citation
• Asexual reproductive potential trumps virulence as a predictor of competitive ability in mixed infections

  2022influential citation
• Challenges for mathematical epidemiological modelling

  2022cites this paper
• Altered within- and between-host transmission under coinfection underpin parasite co-occurrence patterns in the wild

  2022cites this paper
• Causes and consequences of within-host parasite communities

  2022cites this paper
• When Do Epidemics End? Scientific Insights from Mathematical Modelling Studies

  2022cites this paper
• Dynamics in a disease transmission model coupled virus infection in host with incubation delay and environmental effects

  2022cites this paper
• Immunological Evidence of Variation in Exposure and Immune Response to Bacillus anthracis in Herbivores of Kruger and Etosha National Parks

  2022cites this paper
• Variation in within-host replication kinetics among virus genotypes provides evidence of specialist and generalist infection strategies across three salmonid host species.

  2022cites this paper
• Modelling and optimising healthcare interventions in a model with explicit within- and between-host dynamics.

  2022cites this paper
• Niche theory for within-host parasite dynamics: Analogies to food web modules via feedback loops

  2021cites this paper
• Evolution of human respiratory virus epidemics

  2021cites this paper
• Evolution of human respiratory virus epidemics [version 1; peer review: 1 approved with reservations]

  2021cites this paper
• INFERENCE FOR STOCHASTIC KINETIC MODELS FROM MULTIPLE DATA SOURCES FOR JOINT ESTIMATION OF INFECTION DYNAMICS FROM AGGREGATE REPORTS AND VIROLOGICAL DATA BY OKSANA

  2021cites this paper
• Host Controls of Within-Host Disease Dynamics: Insight from an Invertebrate System

  2021cites this paper
• Evolution of human respiratory virus epidemics [version 1; peer review: awaiting peer review]

  2021cites this paper
• Dynamical behaviour in discrete coupled within-host and between-host epidemic model with environmentally driven and saturation incidence

  2021cites this paper
• The roles of environmental variation and parasite survival in virulence–transmission relationships

  2021cites this paper
• ‘Resistance is futile’: Weaker selection for resistance during larger epidemics further increases prevalence and depresses host density

  2021cites this paper
• Transient disease dynamics across ecological scales

  2021cites this paper
• Evolution of human respiratory virus epidemics.

  2021cites this paper
• N ov 2 02 0 Antibiotic treatment , duration of infectiousness , and disease transmission January 29 , 2021

  2021cites this paper
• Within-host evolutionary dynamics of antimicrobial quantitative resistance

  2021cites this paper
• MODELING THE WITHIN-HOST DYNAMICS OF CHOLERA: BACTERIAL-VIRAL-IMMUNE INTERACTION

  2021cites this paper
• The competition dynamics of resistant and sensitive infections

  2021cites this paper
• Testing the multiple stressor hypothesis: chlorothalonil exposure alters transmission potential of a bumblebee pathogen but not individual host health

  2021cites this paper
• A Practical Introduction to Mechanistic Modeling of Disease Transmission in Veterinary Science

  2021cites this paper
• Competition and facilitation among fungal plant parasites affect their life‐history traits

  2021cites this paper
• The Three Ts of Pathogen Evolution During Zoonotic Emergence

  2021cites this paper
• Modelling the effect of within-host dynamics on the diversity of a multi-strain pathogen.

  2021cites this paper
• Looking across Scales in Disease Ecology and Evolution

  2021cites this paper
• Detection, not mortality, constrains the evolution of virulence

  2021cites this paper
• Integrating Infection Intensity into Within- and Between-Host Pathogen Dynamics: Implications for Invasion and Virulence Evolution

  2021cites this paper
• Modeling and Research on an Immuno-Epidemiological Coupled System with Coinfection

  2021influential citation
• Genetic determinants of antibiotic resistance and the evolution of trade-offs during adaptation in a single patient

  2021cites this paper
• Microbiome-pathogen interactions drive epidemiological dynamics of antibiotic resistance: A modeling study applied to nosocomial pathogen control

  2021cites this paper
• Environmental variability affects optimal trade‐offs in ecological immunology

  2021cites this paper
• Evolution of Virulence

  2021cites this paper
• The role of a programmatic immune response on the evolution of pathogen traits.

  2021cites this paper