Optimal sequencing strategies for surveying molecular genetic diversity.

No abstract is available for this paper.

• Publication year

  1996

• Venue

  Genetics

• Publication date

  1996-11-01

• Fields of study

  Biology, Medicine

• Identifiers
  PMID 8913765PMCID PMC1207616
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Coalescents and genealogical structure under neutrality.

  1995cited by this paper
• Properties of statistical tests of neutrality for DNA polymorphism data.

  1995cited by this paper
• Estimating effective population size or mutation rate using the frequencies of mutations of various classes in a sample of DNA sequences.

  1994cited by this paper
• On the two-locus sampling distribution

  1990cited by this paper
• Gene genealogies and the coalescent process.

  1990cited by this paper
• The "hitchhiking effect" revisited.

  1989cited by this paper
• The use of sample genealogies for studying a selectively neutral m-loci model with recombination.

  1985cited by this paper
• Evolutionary relationship of DNA sequences in finite populations.

  1983cited by this paper
• Properties of a neutral allele model with intragenic recombination.

  1983cited by this paper
• Correlation of heterozygosity and the number of alleles in different frequency classes

  1982cited by this paper
• Neutral two-locus multiple allele models with recombination

  1981cited by this paper
• On the number of segregating sites in genetical models without recombination.

  1975cited by this paper

• Maternal lineage diversity and health-related haplogroups in the Gilgiti and Kohistani populations of northern Pakistan

  2025influential citation
• The central limit theorem for the number of mutations in the genealogy of a sample from a large population

  2025cites this paper
• Joint identity among loci under mutation and regular inbreeding.

  2024cites this paper
• Conditional gene genealogies given the population pedigree for a diploid Moran model with selfing.

  2024cites this paper
• Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles

  2023cites this paper
• Correlation of coalescence times in a diploid Wright-Fisher model with recombination and selfing

  2023cites this paper
• Genome duplication and transposon mediated gene alteration shapes the pathogenicity of Rhizoctonia solani AG1-IA

  2022cites this paper
• DNA barcode identification of Conopomorpha cramerella (Snellen, 1904) (Lepidoptera: Gracillariidae) and other moths affecting cacao in Papua New Guinea

  2021cites this paper
• The genomic basis of high-elevation adaptation in wild house mice (Mus musculus domesticus) from South America.

  2021cites this paper
• The mode of speciation during a recent radiation in open-ocean phytoplankton.

  2021cites this paper
• Post-glacial phylogeography and variation in innate immunity loci in a sylvatic rodent, bank vole Myodes glareolus

  2020cites this paper
• A simulation study to examine the information content in phylogenomic datasets under the multispecies coalescent model.

  2020influential citation
• Population structure, connectivity, and demographic history of an apex marine predator, the bull shark Carcharhinus leucas

  2019cites this paper
• Coalescent Theory

  2019cites this paper
• Comparative phylogeography of mainland and insular species of Neotropical molossid bats (Molossus)

  2019cites this paper
• Optimizing Selection of the Reference Population for Genotype Imputation From Array to Sequence Variants

  2019cites this paper
• Linkage Disequilibrium, Recombination and Haplotype Structure

  2019cites this paper
• ABLE: blockwise site frequency spectra for inferring complex population histories and recombination

  2018cites this paper
• Using genomic information to conserve genetic diversity in livestock

  2018cites this paper
• The genomic basis of environmental adaptation in house mice

  2018cites this paper
• Gene Flow in Coral Reef Organisms of the Tropical Eastern Pacific

  2017cites this paper
• Genetic Analysis of Larval Dispersal, Gene Flow, and Connectivity

  2017cites this paper
• On the independent gene trees assumption in phylogenomic studies

  2017influential citation
• Small‐ and large‐scale heterogeneity in genetic variation across the collard flycatcher genome: implications for estimating genetic diversity in nonmodel organisms

  2017cites this paper
• Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome.

  2017cites this paper
• Variance in estimated pairwise genetic distance under high versus low coverage sequencing: The contribution of linkage disequilibrium.

  2017cites this paper
• Variance in Estimated Pairwise Genetic Distance Under High versus Low Coverage Sequencing: the Contribution of Linkage Disequilibrium

  2017cites this paper
• Exact limits of inference in coalescent models

  2017influential citation
• Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis

  2017cites this paper
• 16 Gene Flow in Coral Reef Organismsof the Tropical Eastern Pacific

  2016cites this paper
• Blockwise Site Frequency Spectra for Inferring Complex Population Histories and Recombination

  2016cites this paper
• The large‐X effect in plants: increased species divergence and reduced gene flow on the Silene X‐chromosome

  2016cites this paper
• Approximate Likelihood Inference of Complex Population Histories and Recombination from Multiple Genomes

  2016cites this paper
• On the independent loci assumption in phylogenomic studies

  2016cites this paper
• Molecular Characterization of the Haemagglutinin-Neuraminidase Gene of Human Parainfluenza Virus Type-1 Isolated from Infants Aged 6-36 Months attending Mbagathi District Hospital Nairobi Kenya 2006-2010

  2016cites this paper
• A non-zero variance of Tajima’s estimator for two sequences even for infinitely many unlinked loci

  2016cites this paper
• Whole-genome sequence data uncover loss of genetic diversity due to selection

  2016cites this paper
• In silico phylogenomics using complete genomes: a case study on the evolution of hominoids

  2016cites this paper
• angsd‐wrapper: utilities for analysing next‐generation sequencing data

  2016cites this paper
• Sex-linked genomic variation and its relationship to avian plumage dichromatism and sexual selection

  2015cites this paper
• Large divergence and low diversity suggest genetically informed conservation strategies for the endangered Virgin Islands Boa (Chilabothrus monensis)

  2015cites this paper
• Genetic diversity in humans and non-human primates and its evolutionary consequences.

  2015cites this paper
• Looking Inside Non-coding Chloroplast Regions of Calophyllum brasiliense (Calophyllaceae) to Understand Its Southernmost Population Distribution

  2015cites this paper
• An empirical approach to demographic inference with genomic data.

  2015cites this paper
• Next-generation sequencing and the expanding domain of phylogeography

  2015cites this paper
• Nucleotide diversity estimates of tomatillo (Physalis philadelphica) accessions including nine new inbred lines

  2015cites this paper
• Population genetics of the predatory lady beetle Hippodamia convergens

  2015cites this paper
• Phylogeography and trans‐Pacific divergence of the rocky shore gastropod Nucella lima

  2014cites this paper
• Models of Selection, Isolation, and Gene Flow in Speciation

  2014cites this paper
• Extracting population genetics information from a diploid genome sequence

  2014cites this paper
• Genome-Wide Linkage-Disequilibrium Profiles from Single Individuals

  2014cites this paper
• So , you want to use next-generation sequencing in marine systems ? Insight from the Pan-Pacific Advanced

  2014cites this paper
• Western corn rootworm (Diabrotica virgifera virgifera) transcriptome assembly and genomic analysis of population structure

  2014cites this paper
• So, You Want to Use Next Generation Sequencing In Marine Systems? Insight from the Pan Pacific Advanced Studies Institute

  2014cites this paper
• Hidden diversity in the Andes: comparison of species delimitation methods in montane marsupials.

  2014cites this paper
• Applications du processus ancestral avec recombinaison et conversion en génétique statistique

  2014cites this paper
• Tracing the geographic origins of weedy Ipomoea purpurea in the southeastern United States.

  2013cites this paper
• Paleoclimatic modeling and phylogeography of least killifish, Heterandria formosa: insights into Pleistocene expansion-contraction dynamics and evolutionary history of North American Coastal Plain freshwater biota

  2013cites this paper
• Worldwide genetic variation at the 3′ untranslated region of the HLA-G gene: balancing selection influencing genetic diversity

  2013cites this paper
• Systematics, Biogeography, and Phylogeography of Thylamys Mouse Opossums, a Recent Radiation of Neotropical Marsupials

  2013cites this paper
• Neutrality Tests for Sequences with Missing Data

  2012cites this paper
• Inferring the evolutionary history of divergence despite gene flow in a lizard species, Scincella lateralis (Scincidae), composed of cryptic lineages

  2012cites this paper
• The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow.

  2012cites this paper
• Genetic diversity studies of Trifolium species from the extremes of the UK

  2011cites this paper
• Bayesian Computational Inference of Species Trees and Population Sizes

  2011cites this paper
• Phylogeography and conservation of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNA

  2011cites this paper
• THE INFLUENCES OF QUATERNARY PROCESSES ON NATIVE FRESHWATER DIVERSITY IN PATAGONIA: MOLECULAR INSIGHTS FROM THE GALAXIID FISHES

  2011cites this paper
• Surveillance for chronic wasting disease and other infectious agents in mule deer (Odocoileus hemionus) and white-tailed deer (Odocoileus virginianus) in southern Saskatchewan

  2011cites this paper
• Estimation of parameters in large offspring number models and ratios of coalescence times.

  2011cites this paper
• Recovering population parameters from a single gene genealogy: an unbiased estimator of the growth rate.

  2011cites this paper
• A reduced representation approach to population genetic analyses and applications to human evolution.

  2011cites this paper
• Evolutionary history of isolation and dispersal in North American ground skinks (Scinella lateralis)

  2011cites this paper
• Perspectives on human population structure at the cusp of the sequencing era.

  2011cites this paper
• Species tree estimation and the historical biogeography of heroine cichlids.

  2011cites this paper
• The ‘Expansion–Contraction’ model of Pleistocene biogeography: rocky shores suffer a sea change?

  2010cites this paper
• The Effects of Demography and Linkage on the Estimation of Selection and Mutation Parameters

  2010cites this paper
• Estimating Divergence Parameters With Small Samples From a Large Number of Loci

  2010cites this paper
• Multilocus analysis of honeyeaters (Aves: Meliphagidae) highlights spatio‐temporal heterogeneity in the influence of biogeographic barriers in the Australian monsoonal zone

  2010cites this paper
• Identification of the factors that lead to dispersal and inbreeding

  2010cites this paper
• Genetic Diversity, Evolution and Domestication of Wheat and Barley in the Fertile Crescent

  2010cites this paper
• The limits of fine‐scale mapping

  2009cites this paper
• Bayesian Inference of Species Trees from Multilocus Data

  2009cites this paper
• Coalescent genealogy samplers: windows into population history.

  2009cites this paper
• A gene tree for β-globin sequences from melanesia

  2009cites this paper
• Structured coalescent processes from a modified Moran model with large offspring numbers.

  2009cites this paper
• The tusked king cricket (Libanasidus vittatus (Kirby, 1899), Anostostomatidae) from South Africa: morphological and molecular evidence suggest two cryptic species

  2009cites this paper
• Estimating the process of speciation for humans and chimpanzees

  2009cites this paper
• Domestication of the Triticeae in the Fertile Crescent

  2009cites this paper
• Multilocus phylogeography and phylogenetics using sequence-based markers

  2009cites this paper
• Gene Flow and Isolation among Populations of Marine Animals

  2009cites this paper
• Demographic processes shaping genetic variation.

  2008cites this paper
• The promise of composite likelihood methods for addressing computationally intensive challenges.

  2008cites this paper
• Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects.

  2008cites this paper
• Genetic structuring and migration patterns of Atlantic bigeye tuna, Thunnus obesus (Lowe, 1839)

  2008cites this paper
• Divergence Across Australia's Carpentarian Barrier: Statistical Phylogeography of the Red-Backed Fairy Wren (Malurus melanocephalus)

  2008cites this paper
• Evolutionary history and hybridization in Passerina buntings

  2008cites this paper
• Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data.

  2008cites this paper
• Chloroplast DNA phylogeography in long-lived Huon pine, a Tasmanian rain forest conifer

  2008cites this paper
• On the inadmissibility of Watterson's estimator.

  2008cites this paper
• Linkage Disequilibrium Under Skewed Offspring Distribution Among Individuals in a Population

  2008cites this paper