Codon usage and gene function are related in sequences of Arabidopsis thaliana.

No abstract is available for this paper.

• Publication year

  1998

• Venue

  Gene

• Publication date

  1998-03-16

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/S0378-1119(97)00671-9PMID 9583944
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Codon usage and gene function are related in sequences of Arabidopsis thaliana.

  1998cited by this paper
• The Arabidopsis thaliana cDNA sequencing projects 1

  1997cited by this paper
• YPD-A database for the proteins of Saccharomyces cerevisiae

  1996cited by this paper
• gamma-Tubulin in Arabidopsis: gene sequence, immunoblot, and immunofluorescence studies.

  1994cited by this paper
• Differential expression inArabidopsis ofLhca2, a PSI cab gene

  1994cited by this paper
• Codon usage in Kluyveromyces lactis and in yeast cytochrome c-encoding genes.

  1994cited by this paper
• Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases

  1994cited by this paper
• Semi-constitutive expression of an Arabidopsis thaliana alpha-tubulin gene.

  1993cited by this paper
• Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons.

  1993cited by this paper
• The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes.

  1992cited by this paper
• γ-Tubulin: the microtubule organizer?

  1992cited by this paper
• γ-Tubulin is a centrosomal protein required for cell cycle-dependent microtubule nucleation

  1992cited by this paper
• α-Tubulin gene family of maize (Zea mays L.). Evidence for two ancient α-tubulin genes in plants

  1992cited by this paper
• Gamma-tubulin: the microtubule organizer?

  1992cited by this paper
• Alpha-tubulin gene family of maize (Zea mays L.). Evidence for two ancient alpha-tubulin genes in plants.

  1992cited by this paper
• The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes.

  1992cited by this paper
• The compositional properties of human genes

  1991cited by this paper
• Evidence for horizontal gene transfer in Escherichia coli speciation.

  1991cited by this paper
• Gene distribution and isochore organization in the nuclear genome of plants.

  1990cited by this paper
• The beta-tubulin gene family in Zea mays: two differentially expressed beta-tubulin genes.

  1990cited by this paper
• The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants.

  1989cited by this paper
• Compositional compartmentalization and compositional patterns in the nuclear genomes of plants.

  1988cited by this paper
• The beta-tubulin gene family of Arabidopsis thaliana: preferential accumulation of the beta 1 transcript in roots.

  1988cited by this paper
• The β-tubulin gene family of Arabidopsis thaliana: preferential accumulation of the β1 transcript in roots

  1988cited by this paper
• Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity.

  1988cited by this paper
• "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons.

  1988cited by this paper
• The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

  1987cited by this paper
• Diversity in G + C content at the third position of codons in vertebrate genes and its cause.

  1986cited by this paper
• ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage

  1985cited by this paper
• Codon usage and tRNA content in unicellular and multicellular organisms.

  1985cited by this paper
• Molecular biology and genetics of tubulin.

  1985cited by this paper
• Codon catalog usage is a genome strategy modulated for gene expressivity

  1981cited by this paper

• Characterization of the complete chloroplast genome of Hopea rudiformis P.S. Ashton, a critically endangered and endemic tree from Borneo Island

  2025cites this paper
• A dominant role of transcriptional regulation during the evolution of C4 photosynthesis in Flaveria species

  2025cites this paper
• Arabidopsis thaliana genes with codon usage bias similar to that of B. amyloliquefaciens are involved in the regulation of A. thaliana adaptation to high calcium stress by B. amyloliquefaciens

  2025cites this paper
• Codon usage characterization and phylogenetic analysis of the mitochondrial genome in Hemerocallis citrina

  2024cites this paper
• Scarless genome editing technology and its application to crop improvement

  2024cites this paper
• Compositional Dynamics and Codon Usage Pattern of Myogenin (MyoG) Gene across Different Mammalian Species

  2023cites this paper
• Codon usage bias and genetic diversity in chloroplast genomes of Elaeagnus species (Myrtiflorae: Elaeagnaceae)

  2023cites this paper
• Analysis of codon usage patterns in Haloxylon ammodendron based on genomic and transcriptomic data.

  2022cites this paper
• Insight of genetic features prevalent in three Echinoderm species (Apostichopus japonicus, Heliocedaris erythrogramma and Asterias rubens) and their evolutionary association using comparative codon pattern analysis

  2022cites this paper
• Analysis of Codon Usage Patterns in Giardia duodenalis Based on Transcriptome Data from GiardiaDB

  2021cites this paper
• Molecular Evolutionary Analyses of Euplotes Species Living in Freshwater and Marine Habitats: A Mitogenomic Perspective

  2021cites this paper
• Codon usage bias

  2021cites this paper
• Genome-wide analysis of codon usage in sesame (Sesamum indicum L.)

  2021cites this paper
• Comparative analysis of codon usage patterns of FUT2 from different species

  2021cites this paper
• Comparative analysis of codon usage between Gossypium hirsutum and G. barbadense mitochondrial genomes

  2020cites this paper
• Demographic history and adaptive synonymous and nonsynonymous variants of nuclear genes in Rhododendron oldhamii (Ericaceae)

  2020cites this paper
• Transit From Autotrophism to Heterotrophism: Sequence Variation and Evolution of Chloroplast Genomes in Orobanchaceae Species

  2020cites this paper
• Correlation between gene expression levels under drought stress and synonymous codon usage in rice plant by in-silico study

  2020cites this paper
• Codon usage by chloroplast gene is bias in Hemiptelea davidii

  2020cites this paper
• The Complete Chloroplast Genome of the Vulnerable Oreocharis esquirolii (Gesneriaceae): Structural Features, Comparative and Phylogenetic Analysis

  2020cites this paper
• Analysis of codon usage in the mitochondrion genome of Spirodela polyrhiza

  2019cites this paper
• A cross-talk on compositional dynamics and codon usage patterns of mitochondrial CYB gene in Echinodermata

  2019cites this paper
• Exploring the codon patterns between CCD and NCED genes among different plant species

  2019cites this paper
• Analysis of codon usage patterns in "Lonicerae Flos" (Lonicera macranthoides Hand. -Mazz.) based on transcriptome data.

  2019cites this paper
• Compositional bias coupled with selection and mutation pressure drives codon usage in Brassica campestris genes

  2018cites this paper
• corseq: fast and efficient identification of favoured codons from next generation sequencing reads

  2018cites this paper
• Comparative Study of Back Propagation Neural Network and Support Vector Machine to Classify Hypertension Gene Sequences from Relative Codon Frequency

  2018cites this paper
• Association of EPHA3 Gene Polymorphisms with Nonsyndromic Cleft Lip With or Without Cleft Palate

  2018cites this paper
• Comparative analysis of flower-meristem-identity gene APETALA2 (AP2) codon in different plant species

  2018cites this paper
• Differences in Codon Usage Bias between Photosynthesis-Related Genes and Genetic System-Related Genes of Chloroplast Genomes in Cultivated and Wild Solanum Species

  2018cites this paper
• Codon usage bias and its influencing factors for Y-linked genes in human

  2017cites this paper
• Analysis of transcriptome data reveals multifactor constraint on codon usage in Taenia multiceps

  2017cites this paper
• Analysis of synonymous codon usage bias and phylogeny of coat protein gene in banana bract mosaic virus isolates

  2017cites this paper
• Genome-wide analysis of the synonymous codon usage patterns in apple

  2016cites this paper
• Molecular Evolution and Functional Diversification of Replication Protein A1 in Plants

  2016cites this paper
• Biased Nucleotide Composition and Differential Codon Usage Pattern in HIV-1 and HIV-2

  2016cites this paper
• Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea mays

  2016cites this paper
• Genome-Wide Analysis of Codon Usage Bias in Epichloë festucae

  2016cites this paper
• The Complete Plastid Genome Sequence of the Wild Rice Zizania latifolia and Comparative Chloroplast Genomics of the Rice Tribe Oryzeae, Poaceae

  2016cites this paper
• Gene Expression Prediction and Hierarchical Clustering Analysis of Plant CCD genes

  2016cites this paper
• Comparative Analysis of Codon Usage Bias Patterns in Microsporidian Genomes

  2015cites this paper
• Engineering Escherichia coli for Effective Expression of Plant Genes

  2015cites this paper
• Analysis of synonymous codon usage in FAD 7 genes from different plant species

  2015cites this paper
• GC-Content of Synonymous Codons Profoundly Influences Amino Acid Usage

  2015cites this paper
• Anti‐infective immunoadhesins from plants

  2015cites this paper
• Analysis of synonymous codon usage in FAD7 genes from different plant species.

  2015cites this paper
• Mutational bias is the driving force for shaping the synonymous codon usage pattern of alternatively spliced genes in rice (Oryza sativa L.)

  2015cites this paper
• Comparison of codon usage bias across Leishmania and Trypanosomatids to understand mRNA secondary structure, relative protein abundance and pathway functions.

  2015cites this paper
• Mutation and Selection Cause Codon Usage and Bias in Mitochondrial Genomes of Ribbon Worms (Nemertea)

  2014cites this paper
• Function and Localization of the Arabidopsis thaliana Diacylglycerol Acyltransferase DGAT2 Expressed in Yeast

  2014cites this paper
• Improved expression of recombinant plant-made hEGF

  2014cites this paper
• Synonymous Codon Usage in TTSuV2: Analysis and Comparison with TTSuV1

  2013cites this paper
• Near-random usage of synonymous codon in Nlrp1

  2013cites this paper
• Synonymous codon usage patterns in different parasitic platyhelminth mitochondrial genomes.

  2013cites this paper
• Insight into pattern of codon biasness and nucleotide base usage in serotonin receptor gene family from different mammalian species.

  2012cites this paper
• Acyl-CoA:diacylglycerol acyltransferase: molecular biology, biochemistry and biotechnology.

  2012cites this paper
• Analysis of synonymous codon usage in the Cas1 gene of Riemerella anatipestifer

  2012cites this paper
• Analysis of synonymous codon usage in the mfs_1 gene of Riemerella anatipestifer

  2012cites this paper
• Rates of evolution in stress-related genes are associated with habitat preference in two Cardamine lineages

  2012cites this paper
• In Arabidopsis thaliana codon volatility scores reflect GC3 composition rather than selective pressure

  2012cites this paper
• Patterns and influencing factor of synonymous codon usage in porcine circovirus

  2012cites this paper
• Patterns of synonymous codon usage bias in the model grass Brachypodium distachyon.

  2012cites this paper
• Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species

  2011cites this paper
• Analysis of codon usage in peste des petits ruminant's virus

  2011cites this paper
• Characterization of Codon Usage Bias in the Newly Identified DEV UL53 Gene

  2011cites this paper
• Gene Expression Analyses and Association Studies of Wood Development Genes in Loblolly Pine (Pinus taeda L.)

  2011cites this paper
• Characterization of a thermostable β-glucuronidase from Thermotoga maritima expressed in Arabidopsis thaliana

  2011cites this paper
• Synonymous Codon Usage, GC3, and Evolutionary Patterns Across Plastomes of Three Pooid Model Species: Emerging Grass Genome Models for Monocots

  2011cites this paper
• Interspecific and Intragenic Differences in Codon Usage Bias Among Vertebrate Myosin Heavy-Chain Genes

  2011cites this paper
• Patterns of codon usage bias in Silene latifolia.

  2011cites this paper
• Arabidopsis and Capsella species

  2011cites this paper
• Codon usage: Nature's roadmap to expression and folding of proteins

  2011cites this paper
• Complex mutation and weak selection together determined the codon usage bias in bryophyte mitochondrial genomes.

  2010cites this paper
• GC3 biology in corn, rice, sorghum and other grasses

  2010cites this paper
• Analysis of synonymous codon usage in Zea mays

  2010cites this paper
• Coding Biases and Viral Fitness

  2010cites this paper
• T itle: Patterns of codon usage bias in Silene latifolia (Research Article)

  2010cites this paper
• Fine-Tuning Translation Kinetics Selection as the Driving Force of Codon Usage Bias in the Hepatitis A Virus Capsid

  2010cites this paper
• Categorizing Host-Dependent RNA Viruses by Principal Component Analysis of Their Codon Usage Preferences

  2009cites this paper
• Plant recombinant erythropoietin attenuates inflammatory kidney cell injury.

  2009cites this paper
• characterization of codon usage bias in the newly identified DEV UL10 gene

  2009cites this paper
• Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis

  2009cites this paper
• AGE TATS Sequence motifs influencing the efficiency of translation

  2009cites this paper
• Gene Classification Using Codon Usage and Support Vector Machines

  2009cites this paper
• Strategies for improving vaccine antigens expression in transgenic plants: fusion to carrier sequences.

  2009cites this paper
• Highly Expressed Genes in Marine Sponge Suberites domuncula Prefer C- and G-Ending Codons

  2009cites this paper
• Codon usage is associated with the evolutionary age of genes in metazoan genomes

  2009cites this paper
• Analysis of synonymous codon usage patterns in different plant mitochondrial genomes

  2009cites this paper
• Analysis of synonymous codon usage in the UL24 gene of duck enteritis virus

  2009cites this paper
• THE EFFECTS OF DIRECTIONAL EPISTASIS ON MOLECULAR EVOLUTION

  2009cites this paper
• Analysis of the codon use frequency of AMPK family genes from different species

  2009cites this paper
• Dynamic covariation between gene expression and genome characteristics.

  2008cites this paper
• Characterization of codon usage bias in the dUTPase gene of duck enteritis virus

  2008cites this paper
• An extensive analysis on the global codon usage pattern of baculoviruses

  2008cites this paper
• Characterization of cDNA of lycopene beta-cyclase responsible for a high level of beta-carotene accumulation in Dunaliella salina.

  2008cites this paper
• Comparative Analysis of Codon Usage Patterns Among Mitochondrion, Chloroplast and Nuclear Genes in Triticum aestivum L.

  2007cites this paper
• Gender-specific selection on codon usage in plant genomes

  2007influential citation
• Mutation pressure shapes codon usage in the GC-Rich genome of foot-and-mouth disease virus

  2007cites this paper
• Analysis of Synonymous Codon Usage in Aeropyrum pernix K1 and Other Crenarchaeota Microorganisms

  2007cites this paper
• Influence of codon bias on the expression of foreign genes in microalgae.

  2007cites this paper