Measuring semantic similarity between Gene Ontology terms

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Data & Knowledge Engineering

• Publication date

  2007-04-01

• Fields of study

  Biology, Computer Science

• Identifiers
  DOI 10.1016/J.DATAK.2006.05.003
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Handbook on Ontologies

  2009cited by this paper
• Ontologies for bioinformatics.

  2007cited by this paper
• The Pfam protein families database

  2007cited by this paper
• Advanced Data Mining Technologies in Bioinformatics

  2006cited by this paper
• Mining the BioLiterature: towards automatic annotation of genes and proteins

  2006cited by this paper
• Correlation between gene expression and GO semantic similarity

  2005cited by this paper
• Finding genomic ontology terms in text using evidence content

  2005cited by this paper
• Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors

  2005cited by this paper
• Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource

  2004cited by this paper
• The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

  2004cited by this paper
• Semantic distance in WordNet: An experimental, application-oriented evaluation of five measures

  2004cited by this paper
• FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

  2004cited by this paper
• UniProt: the Universal Protein knowledgebase

  2004cited by this paper
• Investigating Semantic Similarity Measures Across the Gene Ontology: The Relationship Between Sequence and Annotation

  2003cited by this paper
• Implementation of a Functional Semantic Similarity Measure between Gene-Products

  2003cited by this paper
• Semantic Similarity Measures as Tools for Exploring the Gene Ontology

  2002cited by this paper
• Intrinsic errors in genome annotation.

  2001cited by this paper
• Foundations of Statistical Natural Language Processing

  2001cited by this paper
• Book Reviews: WordNet: An Electronic Lexical Database

  1999cited by this paper
• Protein annotation: detective work for function prediction.

  1998cited by this paper
• An Information-Theoretic Definition of Similarity

  1998cited by this paper
• Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy

  1997cited by this paper
• Using Information Content to Evaluate Semantic Similarity in a Taxonomy

  1995cited by this paper
• A Translation Approach to Portable Ontologies

  1993cited by this paper
• A translation approach to portable ontology specifications

  1993cited by this paper
• Development and application of a metric on semantic nets

  1989cited by this paper

• Assessing the comorbidity between asthma and depression through polygenic risk scoring and time-to-event models

  2026influential citation
• A Conceptual Graph-Based Method to Compute Information Content

  2023cites this paper
• Assessment of GO-Based Protein Interaction Affinities in the Large-Scale Human–Coronavirus Family Interactome

  2023cites this paper
• GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype

  2023cites this paper
• HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey

  2022cites this paper
• A unified framework for semantic similarity computation of concepts

  2021cites this paper
• WEWD: A Combined Approach for Measuring Cross-lingual Semantic Word Similarity Based on Word Embeddings and Word Definitions

  2021cites this paper
• Drinking and smoking polygenic risk is associated with childhood and early-adulthood psychiatric and behavioral traits independently of substance use and psychiatric genetic risk

  2021cites this paper
• Drinking and smoking polygenic risk is associated with neurodevelopmental outcomes of children and young adults independently of psychopathology and substance use.

  2020cites this paper
• iCDA-CMG: identifying circRNA-disease associations by federating multi-similarity fusion and collective matrix completion

  2020cites this paper
• A Benchmark for Biomedical Knowledge Graph based Similarity

  2020cites this paper
• SimExact – An Efficient Method to Compute Function Similarity Between Proteins Using Gene Ontology

  2020cites this paper
• Network based study to explore genetic linkage between diabetes mellitus and myocardial ischemia: Bioinformatics approach

  2020cites this paper
• Structure prediction algorithm for protein complexes based on gene ontology

  2020cites this paper
• Impact of the Continuous Evolution of Gene Ontology on the Performance of Similarity Measures for Scoring Confidence of Protein Interactions

  2020cites this paper
• Impact of low-confidence interactions on computational identification of protein complexes

  2020cites this paper
• Computational modeling of human-nCoV protein-protein interaction network

  2020cites this paper
• Алгоритм предсказания структур белковых комплексов на основе генной онтологии

  2020cites this paper
• Tools for Semantic Analysis Based on Semantic Similarity

  2019cites this paper
• Handling Big Data Scalability in Biological Domain Using Parallel and Distributed Processing: A Case of Three Biological Semantic Similarity Measures

  2019cites this paper
• Measuring Boundedness for Protein Complex Identification in PPI Networks

  2019cites this paper
• Multi-view manifold regularized learning-based method for prioritizing candidate disease miRNAs

  2019cites this paper
• Efficacy of leflunomide combined with ligustrazine in the treatment of rheumatoid arthritis: prediction with network pharmacology and validation in a clinical trial

  2019cites this paper
• Strategies and Techniques for Federated Semantic Knowledge Retrieval and Integration

  2019cites this paper
• Utilisation d'algorithmes génétiques pour l'identification systématique de réseaux de gènes co-régulés.

  2019influential citation
• A Formal Model for Semantic Computing Based on Generalized Probabilistic Automata

  2019cites this paper
• Predicting Missing and Spurious Protein-Protein Interactions Using Graph Embeddings on GO Annotation Graph

  2019cites this paper
• GO2Vec: transforming GO terms and proteins to vector representations via graph embeddings

  2019cites this paper
• Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

  2018cites this paper
• Efficient Semi-automatic Maintenance of Mapping between Ontologies in a Biomedical Environment

  2018cites this paper
• Bradyrhizobium diazoefficiens USDA 110-Glycine max interactome provides candidate proteins associated with symbiosis

  2018cites this paper
• KeNet: a comprehensive Turkish wordNet and its applications in text clustering

  2018cites this paper
• GARUM: A Semantic Similarity Measure Based on Machine Learning and Entity Characteristics

  2018cites this paper
• DIS-C: conceptual distance in ontologies, a graph-based approach

  2018cites this paper
• A New Family of Similarity Measures for Scoring Confidence of Protein Interactions using Gene Ontology

  2018cites this paper
• Gene ontology improves template selection in comparative protein docking

  2018cites this paper
• Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations

  2018cites this paper
• A formal model of semantic computing

  2018cites this paper
• Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph

  2018cites this paper
• MiRGOFS: a GO‐based functional similarity measurement for miRNAs, with applications to the prediction of miRNA subcellular localization and miRNA‐disease association

  2018cites this paper
• Evaluating Functional Annotations of Enzymes Using the Gene Ontology

  2018cites this paper
• 1 Bradyrhizobium diazoefficiens USDA 110-Glycine max 1 interactome provides candidate proteins 2 associated with symbiosis 3 4

  2018cites this paper
• A Type-2 fuzzy data fusion approach for building reliable weighted protein interaction networks with application in protein complex detection

  2017cites this paper
• MateTee: A Semantic Similarity Metric Based on Translation Embeddings for Knowledge Graphs

  2017cites this paper
• Personalized News Article Recommendation with Novelty Using Collaborative Filtering Based Rough Set Theory

  2017cites this paper
• Wikipedia-based information content and semantic similarity computation

  2017cites this paper
• A hybrid semantic similarity feature-based to support multiple ontologies

  2017cites this paper
• Novel Algorithm Development for ‘NextGeneration’ Sequencing Data Analysis

  2017cites this paper
• Similarity Analysis on Unstructured Text Using Dependency Trees in Biomedical Domain

  2017cites this paper
• Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions

  2017influential citation
• Predicting MicroRNA-Disease Associations Using Kronecker Regularized Least Squares Based on Heterogeneous Omics Data

  2017cites this paper
• A graph-based semantic relatedness assessment method combining wikipedia features

  2017cites this paper
• The effects of shared information on semantic calculations in the gene ontology

  2017influential citation
• HESML: A scalable ontology-based semantic similarity measures library with a set of reproducible experiments and a replication dataset

  2017cites this paper
• Services Rating Based On Privacy-Ontology in Semantic Web of Things

  2017influential citation
• Exploring Approaches for Detecting Protein Functional Similarity within an Orthology-based Framework

  2017cites this paper
• Towards a More Representative Definition of Cyber Security

  2017cites this paper
• Constructing Genetic Networks using Biomedical Literature and Rare Event Classification

  2017cites this paper
• Selecting high-quality negative samples for effectively predicting protein-RNA interactions

  2017cites this paper
• Studying the Cohesion Evolution of Genes Related to Chronic Lymphocytic Leukemia Using Semantic Similarity in Gene Ontology and Self-Organizing Maps

  2016cites this paper
• Global Alignment of Protein-Protein Interaction Networks: A Survey

  2016cites this paper
• Sesame: clustering with semantic similarity based on multiple ontologies

  2016cites this paper
• Exploring information from the topology beneath the Gene Ontology terms to improve semantic similarity measures.

  2016cites this paper
• Semantic Clustering for Identifying Overlapping Biological Communities

  2016cites this paper
• Semantic similarity between ontologies at different scales

  2016cites this paper
• Recent Advances in Ontology-based Semantic Similarity Measures and Information Content Models based on WordNet

  2016influential citation
• Combining Expression Data and Knowledge Ontology for Gene Clustering and Network Reconstruction

  2016cites this paper
• The impact of Gene Ontology evolution on GO-Term Information Content

  2016cites this paper
• Semantic similarity across biomedical ontologies

  2016cites this paper
• A Novel Approach to Managing the Dynamic Nature of Semantic Relatedness

  2016cites this paper
• Taxonomy-based information content and wordnet-wiktionary-wikipedia glosses for semantic relatedness

  2016cites this paper
• Possible relationship between common genetic variation and white matter development in a pilot study of preterm infants

  2016cites this paper
• Plant miRNA function prediction based on functional similarity network and transductive multi-label classification algorithm

  2016cites this paper
• An improved method for functional similarity analysis of genes based on Gene Ontology

  2016cites this paper
• An ontology for human-like interaction systems

  2016cites this paper
• Using Semantic Similarities and csbl.go for Analyzing Microarray Data.

  2016cites this paper
• Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

  2016cites this paper
• FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies

  2016cites this paper
• A functional ontology-based score for template-based protein docking

  2016cites this paper
• Semantic Signature: Comparative Interpretation of Gene Expression on a Semantic Space

  2016cites this paper
• A refinement of the well-founded Information Content models with a very detailed experimental survey on WordNet.

  2016cites this paper
• How to learn about gene function: text-mining or ontologies?

  2015cites this paper
• Semantic similarity measurement between gene ontology terms based on exclusively inherited shared information.

  2015cites this paper
• Exploiting information content and semantics to accurately compute similarity of GO-based annotated entities

  2015cites this paper
• Finding off‐targets, biological pathways, and target diseases for chymase inhibitors via structure‐based systems biology approach

  2015cites this paper
• An integrated information-based similarity measurement of gene ontology terms

  2015cites this paper
• Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment

  2015cites this paper
• Determining similarity of scientific entities in annotation datasets

  2015cites this paper
• Quantitative comparison of functional properties in protein-protein complexes

  2015cites this paper
• Algorithmic Approach for Removing the Redundancy in Diabetic Gene Categories Based on Semantic Similarity and Gene Expression Data

  2015cites this paper
• Feature-based approaches to semantic similarity assessment of concepts using Wikipedia

  2015cites this paper
• Inferring plant microRNA functional similarity using a weighted protein-protein interaction network

  2015cites this paper
• Exploring the relationship between hub proteins and drug targets based on GO and intrinsic disorder

  2015cites this paper
• A New Semantic Functional Similarity over Gene Ontology

  2015cites this paper
• WCOACH: Protein complex prediction in weighted PPI networks.

  2015cites this paper
• Book Reviews: Semantic Similarity from Natural Language and Ontology Analysis by Sébastien Harispe, Sylvie Ranwez, Stefan Janaqi, and Jacky Montmain

  2015cites this paper
• OnSim: A Similarity Measure for Determining Relatedness Between Ontology Terms

  2015cites this paper
• A Hybrid Data and Knowledge Driven Approach for Gene Clustering and Network Reconstruction

  2015cites this paper
• An Ontology-Based Semantic Similarity Measure Considering Multi-Inheritance in Biomedicine

  2015cites this paper
• FEDRR: Fast, Exhaustive Detection of Redundant Hierarchical Relations in Large Biomedical Ontologies

  2015cites this paper