Large and linked in scientific publishing

We are delighted to announce the launch of GigaScience, an online open-access journal that focuses on research using or producing large datasets in all areas of biological and biomedical sciences. GigaScience is a new type of journal that provides standard scientific publishing linked directly to a database that hosts all the relevant data. The primary goals for the journal, detailed in this editorial, are to promote more rapid data release, broader use and reuse of data, improved reproducibility of results, and direct, easy access between analyses and their data. Direct and permanent connections of scientific analyses and their data (achieved by assigning all hosted data a citable DOI) will enable better analysis and deeper interpretation of the data in the future.

• Publication year

  2012

• Venue

  GigaScience

• Publication date

  2012-07-12

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1186/2047-217X-1-1PMID 23587310PMCID 3617448
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities

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• GigaDB: announcing the GigaScience database

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• The future of DNA sequence archiving

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• A call for an international network of genomic observatories (GOs)

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• The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

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• Tissue sampling methods and standards for vertebrate genomics

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• Badomics words and the power and peril of the ome-meme

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• Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers

  2012cited by this paper
• The rise of a digital immune system

  2012cited by this paper
• Data sharing and publishing in the field of neuroimaging

  2012cited by this paper

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  2023cites this paper
• COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions

  2022cites this paper
• A Decade of GigaScience: Milestones in Open Science

  2022cites this paper
• Genome survey and high-resolution genetic map provide valuable genetic resources for Fenneropenaeus chinensis

  2021cites this paper
• Molecular identification of Streptococcus sp. and antibiotic resistance genes present in Tilapia farms (Oreochromis niloticus) from the Northern Pacific region, Costa Rica

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• Metagenomic sequencing reveals altered gut microbiota of sojourners at high altitude: a longitudinal study

  2021cites this paper
• Transformation of TNT, 2,4-DNT, and PETN by Raoultella planticola M30b and Rhizobium radiobacter M109 and exploration of the associated enzymes

  2020cites this paper
• Near-complete phylogeny of extant Crocodylia (Reptilia) using mitogenome-based data

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• An Automatic Driver Assistant Based on Intention Detecting Using EEG Signal

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• The highly rearranged mitochondrial genomes of three economically important scale insects and the mitochondrial phylogeny of Coccoidea (Hemiptera: Sternorrhyncha)

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• B chromosomes of multiple species have intense evolutionary dynamics and accumulated genes related to important biological processes

  2020cites this paper
• Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment: a randomized trial of preterm infants

  2020cites this paper
• Metagenomic analysis reveals significant differences in microbiome and metabolic profiles in the rumen of sheep fed low N diet with increased urea supplementation.

  2020cites this paper
• Mesorhizobium rhizophilum sp. nov., a 1-aminocyclopropane-1-carboxylate deaminase producing bacterium isolated from rhizosphere of maize in Northeast China

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• Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap

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• HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C

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• Cloning and functional expression of a food-grade circular bacteriocin, plantacyclin B21AG, in probiotic Lactobacillus plantarum WCFS1

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• Citrus Genomes: From Sequence Variations to Epigenetic Modifications

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• GigaByte: Publishing at the Speed of Research

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• Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis

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• Metagenome SNP calling via read-colored de Bruijn graphs

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• Gut Microbiota Plasticity Influences the Adaptability of Wild and Domestic Animals in Co-inhabited Areas

  2020cites this paper
• New Tetramic Acids Comprising of Decalin and Pyridones From Chaetomium olivaceum SD-80A With Antimicrobial Activity

  2020cites this paper
• Microbial structure of carbon source utilization in rice rhizosphere and non‐rhizosphere soils with different short‐term tillage management

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• Graphene oxide affects soil bacterial and fungal diversity even at parts-per-trillion concentrations

  2019cites this paper
• Antibacterial and anticancer activities of orphan biosynthetic gene clusters from Atlantis II Red Sea brine pool

  2019cites this paper
• Utilization of carbon sources in the rice rhizosphere and nonrhizosphere soils with different long‐term fertilization management

  2019cites this paper
• Interpretations of microbial community studies are biased by the selected 16S rRNA gene amplicon sequencing pipeline

  2019cites this paper
• Characterization of the mitochondrial genome of Analcellicampa xanthosoma gen. et sp. nov. (Hymenoptera: Tenthredinidae)

  2019cites this paper
• The microbiome profiling of fungivorous black tinder fungus beetle Bolitophagus reticulatus reveals the insight into bacterial communities associated with larvae and adults

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• Dataset of genome identification and characterization of microsatellite markers loci in Atriplex atacamensis and Atriplex deserticola

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• Early Life Stages of a Common Broadcast Spawning Coral Associate with Specific Bacterial Communities Despite Lack of Internalized Bacteria

  2019cites this paper
• From markers to genome-based breeding in wheat

  2019cites this paper
• The honey bee gut microbiota: strategies for study and characterization

  2019cites this paper
• Complete mitochondrial genome sequence of Patagonian blenny, Eleginops maclovinus (Perciformes: Eleginopidae) with phylogenetic consideration

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• The genome assembly of asparagus bean, Vigna unguiculata ssp. sesquipedialis

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• Enrichment of G4DNA and a Large Inverted Repeat Coincide in the Mitochondrial Genomes of Termitomyces

  2019cites this paper
• Transcriptomic analysis of pollen-pistil interactions in almond (Prunus dulcis) identifies candidate genes for components of gametophytic self-incompatibility

  2019cites this paper
• Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

  2019cites this paper
• Genomic insights into mite phylogeny, fitness, development, and reproduction

  2019cites this paper
• A tunable filter for high molecular weight DNA selection and linked-read sequencing.

  2019cites this paper
• Bacterial and algal symbiont dynamics in early recruits exposed to two adult coral species

  2019cites this paper
• Effects of carbon nanotubes and derivatives of graphene oxide on soil bacterial diversity

  2019cites this paper
• Testing mate recognition through reciprocal crosses of two native populations of the whitefly Bemisia tabaci (Gennadius) in Australia

  2019cites this paper
• Ultra-fast search of all deposited bacterial and viral genomic data

  2019cites this paper
• Transcriptome-derived investigation of biosynthesis of quinolizidine alkaloids in narrow-leafed lupin (Lupinus angustifolius L.) highlights candidate genes linked to iucundus locus

  2019cites this paper
• Complete mitochondrial genome sequence of Labriocimbex sinicus, a new genus and new species of Cimbicidae (Hymenoptera) from China

  2019cites this paper
• K-mer Mapping and RDBMS Indexes

  2019cites this paper
• Soil chloride content influences the response of bacterial but not fungal diversity to silver nanoparticles entering soil via wastewater treatment processing

  2019cites this paper
• In silico polymorphic novel SSR marker development and the first SSR-based genetic linkage map in pistachio

  2018cites this paper
• The complete mitochondrial genome of Gammarus roeselii (Crustacea, Amphipoda): insights into mitogenome plasticity and evolution

  2018cites this paper
• Insights into an Extensively Fragmented Eukaryotic Genome: De Novo Genome Sequencing of the Multinuclear Ciliate Uroleptopsis citrina

  2018cites this paper
• Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi

  2018cites this paper
• Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content

  2018cites this paper
• Complete Genome Sequence of the Heavy-Metal-Tolerant Endophytic Type Strain of Salinicola tamaricis

  2018cites this paper
• Near-Complete Genome Sequence of Pseudomonas palleroniana MAB3, a Beneficial 1-Aminocyclopropane-1-Carboxylate Deaminase-Producing Bacterium Able To Promote the Growth of Mushrooms and Plants

  2018cites this paper
• Draft Genome Sequence of FGL03-6, a Race 1 Strain of Fusarium oxysporum f. sp. conglutinans, the Causal Agent of Cabbage Fusarium Wilt

  2018cites this paper
• The complete chloroplast genome sequence of Actinidia kolomikta from north China

  2018cites this paper
• Extensive gene rearrangements in the mitochondrial genomes of two egg parasitoids, Trichogramma japonicum and Trichogramma ostriniae (Hymenoptera: Chalcidoidea: Trichogrammatidae)

  2018cites this paper
• The complete chloroplast genome sequence of the wild Chinese chestnut (Castanea mollissima)

  2018cites this paper
• A study of gene expression changes at the Bp-2 locus associated with bitter pit symptom expression in apple (Malus pumila)

  2018cites this paper
• Genome Sequence of Torulaspora microellipsoides CLIB 830T

  2018cites this paper
• Genome Sequences of Listeria Phages Induced from Lysogenic Isolates of Listeria monocytogenes from Seafood and a Seafood Processing Environment in Thailand

  2018cites this paper
• The leaf transcriptome of fennel (Foeniculum vulgare Mill.) enables characterization of the t-anethole pathway and the discovery of microsatellites and single-nucleotide variants

  2018cites this paper
• A metagenomic study of the gut microbiome in Behcet’s disease

  2018cites this paper
• Machine learning meets genome assembly

  2018cites this paper
• First draft genome sequencing of fennel (Foeniculum vulgare Mill.): identification of simple sequence repeats and their application in marker-assisted breeding

  2018cites this paper
• Machine Learning for detection of viral sequences in human metagenomic datasets

  2018cites this paper
• First insight into microbiome profile of fungivorous thrips Hoplothrips carpathicus (Insecta: Thysanoptera) at different developmental stages: molecular evidence of Wolbachia endosymbiosis

  2018cites this paper
• Raritas: a program for counting high diversity categorical data with highly unequal abundances

  2018cites this paper
• Erratum to: Transcriptional mapping of the primary somatosensory cortex upon sensory deprivation

  2018cites this paper
• Metatranscriptomic Investigation of Adaptation in NO and N2O Production From a Lab-Scale Nitrification Process Upon Repeated Exposure to Anoxic–Aerobic Cycling

  2018cites this paper
• The draft genomes of five agriculturally important African orphan crops

  2018cites this paper
• Advances in genomic hepatocellular carcinoma research

  2018cites this paper
• Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene

  2018cites this paper
• Freshwater carbon and nutrient cycles revealed through reconstructed population genomes

  2018cites this paper
• Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)

  2018cites this paper
• Databases for Rice Omics Studies

  2018cites this paper
• Sequencing and Assembly of the Pineapple Genome

  2018cites this paper
• FASTCAR: Rapid alignment-free prediction of sequence alignment identity scores

  2018cites this paper
• Freshwater Adaptation at the Molecular Scale in the Unique Sponges of Lake Baikal

  2018cites this paper
• Mortierella elongata's roles in organic agriculture and crop growth promotion in a mineral soil

  2018cites this paper
• GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

  2018cites this paper
• Connections between freshwater carbon and nutrient cycles revealed through reconstructed population genomes

  2018cites this paper
• Draft genomes of the corallimorpharians Amplexidiscus fenestrafer and Discosoma sp.

  2017cites this paper
• Looking back: forward looking

  2017cites this paper
• Genetic characteristics of polycistronic system-mediated randomly-inserted multi-transgenes in miniature pigs and mice

  2017cites this paper
• Genetic diversity and population structure analysis of spinach by single-nucleotide polymorphisms identified through genotyping-by-sequencing

  2017cites this paper
• Development of polymorphic microsatellite loci for the design of management and conservation strategies of the critically endangered Barrens topminnow (Fundulus julisia, Williams & Etnier, 1982)

  2017cites this paper
• Complete genome sequence of Shewanella psychrophila WP2, a deep-sea bacterium isolated from west Pacific sediment

  2017cites this paper
• Resistome SNP Calling via Read Colored de Bruijn Graphs

  2017cites this paper
• Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement

  2017cites this paper
• Sequencing the Chickpea Genome

  2017cites this paper
• Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates

  2017cites this paper
• Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage

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• Bacterial and diazotrophic diversities of endophytes in Dendrobium catenatum determined through barcoded pyrosequencing

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• Unique community structure of viruses in a glacier soil of the Tianshan Mountains, China

  2017cites this paper
• Adoption of PHEV/EV in Malaysia: A critical review on predicting consumer behaviour

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• A new era of sustainable transport: An experimental examination on forecasting adoption behavior of EVs among Malaysian consumer

  2017cites this paper
• Two distinct metacommunities characterize the gut microbiota in Crohn's disease patients

  2017cites this paper