GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Applied Microbiology and Biotechnology

• Publication date

  2013-08-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00253-012-4496-zPMID 23135227
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The Functional Consequences of Biodiversity

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• The Functional Consequences of Biodiversity: Empirical Progress and Theoretical Extensions (MPB-33)

  2013cited by this paper
• Applications of functional gene microarrays for profiling microbial communities.

  2012cited by this paper
• Interactions between mangroves and exotic Spartina in an anthropogenically disturbed estuary in southern China.

  2012influential reference
• Phosphorus and nitrogen effects on microbial euendolithic communities and their bioerosion rates.

  2012cited by this paper
• Genotypic diversity enhances invasive ability of Spartina alterniflora

  2012cited by this paper
• Relationships between soil organic matter, nutrients, bacterial community structure, and the performance of microbial fuel cells.

  2012cited by this paper
• Factors affecting the bioaccessibility of methylmercury in several marine fish species.

  2011influential reference
• Do Patterns of Bacterial Diversity along Salinity Gradients Differ from Those Observed for Macroorganisms?

  2011cited by this paper
• Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

  2011cited by this paper
• Increased soil emissions of potent greenhouse gases under increased atmospheric CO2

  2011cited by this paper
• Mangrove trees affect the community structure and distribution of anammox bacteria at an anthropogenic-polluted mangrove in the Pearl River Delta reflected by 16S rRNA and hydrazine oxidoreductase (HZO) encoding gene analyses

  2011cited by this paper
• Real-Time PCR Quantification and Diversity Analysis of the Functional Genes aprA and dsrA of Sulfate-Reducing Prokaryotes in Marine Sediments of the Peru Continental Margin and the Black Sea

  2011cited by this paper
• The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide

  2011cited by this paper
• Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

  2011influential reference
• Influence of Salinity on Bacterioplankton Communities from the Brazilian Rain Forest to the Coastal Atlantic Ocean

  2011cited by this paper
• Spartina alterniflora invasion increases soil inorganic nitrogen pools through interactions with tidal subsidies in the Yangtze Estuary, China

  2011cited by this paper
• Changes in Community Structure of Sediment Bacteria Along the Florida Coastal Everglades Marsh–Mangrove–Seagrass Salinity Gradient

  2010cited by this paper
• Quantification of Burkholderia coxL Genes in Hawaiian Volcanic Deposits

  2010influential reference
• Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

  2010influential reference
• Shelter from the storm? Use and misuse of coastal vegetation bioshields for managing natural disasters

  2010cited by this paper
• Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2.

  2010cited by this paper
• Sedimentation within and among mangrove forests along a gradient of geomorphological settings

  2010cited by this paper
• The Abundance of Microbial Functional Genes in Grassy Woodlands Is Influenced More by Soil Nutrient Enrichment than by Recent Weed Invasion or Livestock Exclusion

  2010cited by this paper
• Maintenance of estuarine water quality by mangroves occurs during flood periods: a case study of a subtropical mangrove wetland.

  2010influential reference
• Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments

  2010cited by this paper
• Regulation of dsr genes encoding proteins responsible for the oxidation of stored sulfur in Allochromatium vinosum.

  2010cited by this paper
• Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils.

  2009cited by this paper
• Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes

  2009cited by this paper
• Optical antisense tumor targeting in vivo with an improved fluorescent DNA duplex probe.

  2009influential reference
• Development of a Common Oligonucleotide Reference Standard for Microarray Data Normalization and Comparison across Different Microbial Communities

  2009cited by this paper
• GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer.

  2009influential reference
• PAHs contamination and bacterial communities in mangrove surface sediments of the Jiulong River Estuary, China.

  2008influential reference
• Relationships between Surface Elevation and Groundwater in Mangrove Forests of Southeast Australia

  2008cited by this paper
• Climate Change 2007 Synthesis report

  2008cited by this paper
• Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge

  2008cited by this paper
• Phylogenetic diversity of nitrogen-fixing bacteria in mangrove sediments assessed by PCR–denaturing gradient gel electrophoresis

  2008cited by this paper
• Spatial scaling of functional gene diversity across various microbial taxa

  2008cited by this paper
• Characterization of Nitrifying, Denitrifying, and Overall Bacterial Communities in Permeable Marine Sediments of the Northeastern Gulf of Mexico

  2008cited by this paper
• Distribution and diversity of phytate-mineralizing bacteria

  2007cited by this paper
• Climate change 2007 : the physical science basis : contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change

  2007cited by this paper
• Climate change 2007: Synthesis report

  2007cited by this paper
• Changes in Atmospheric Constituents and in Radiative Forcing. Chapter 2

  2007influential reference
• Phylogeny of the alpha and beta subunits of the dissimilatory adenosine-5'-phosphosulfate (APS) reductase from sulfate-reducing prokaryotes--origin and evolution of the dissimilatory sulfate-reduction pathway.

  2007cited by this paper
• Global patterns in bacterial diversity

  2007cited by this paper
• Couplings between changes in the climate system and biogeochemistry

  2007cited by this paper
• Distribution, diversity and ecology of aerobic CO-oxidizing bacteria

  2007influential reference
• Climate Change 2007: The Physical Science Basis

  2007cited by this paper
• Carbon sequestration

  2007cited by this paper
• Microbial response to salinity change in Lake Chaka, a hypersaline lake on Tibetan plateau.

  2007cited by this paper
• Relationships between bacterial diversity and environmental variables in a tropical marine environment, Rio de Janeiro.

  2007cited by this paper
• Bacterioplankton Community Composition along a Salinity Gradient of Sixteen High-Mountain Lakes Located on the Tibetan Plateau, China

  2006influential reference
• Nitrous Oxide Reductase Genes (nosZ) of Denitrifying Microbial Populations in Soil and the Earthworm Gut Are Phylogenetically Similar

  2006cited by this paper
• Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification

  2006influential reference
• SoxV transfers electrons to the periplasm of Paracoccus pantotrophus - an essential reaction for chemotrophic sulfur oxidation.

  2006cited by this paper
• Correlation between Anammox Activity and Microscale Distribution of Nitrite in a Subtropical Mangrove Sediment

  2005cited by this paper
• Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

  2005cited by this paper
• Below-ground process responses to elevated CO2 and temperature: a discussion of observations, measurement methods, and models

  2004cited by this paper
• Abundance of Reverse Tricarboxylic Acid Cycle Genes in Free-Living Microorganisms at Deep-Sea Hydrothermal Vents

  2004cited by this paper
• Structures of Selenomonas ruminantium phytase in complex with persulfated phytate: DSP phytase fold and mechanism for sequential substrate hydrolysis.

  2004cited by this paper
• A reverse KREBS cycle in photosynthesis: consensus at last

  2004cited by this paper
• Cyanobacteria composition and impact of seasonality on their in situ nitrogen fixation rate in a mangrove ecosystem adjacent to Zanzibar town

  2004cited by this paper
• Denitrification associated N loss in mangrove soil

  2004cited by this paper
• N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica

  2003cited by this paper
• Molecular Diversity of Denitrifying Genes in Continental Margin Sediments within the Oxygen-Deficient Zone off the Pacific Coast of Mexico

  2003cited by this paper
• Microbial community utilization of recalcitrant and simple carbon compounds: impact of oak-woodland plant communities

  2003cited by this paper
• The term phytase comprises several different classes of enzymes.

  2003cited by this paper
• Evidence of Chemolithoautotrophy in the Bacterial Community Associated with Alvinella pompejana, a Hydrothermal Vent Polychaete

  2003cited by this paper
• Characterization of organic phosphorus in leachate from a grassland soil

  2003cited by this paper
• Anaerobic Ammonium Oxidation Measured in Sediments along the Thames Estuary, United Kingdom

  2003cited by this paper
• The Functional Consequences of Biodiversity. Empirical Progress and Theoretical Extensions

  2003cited by this paper
• Microbial diversity and function in soil: from genes to ecosystems.

  2002cited by this paper
• Diversity of Nitrite Reductase (nirK and nirS) Gene Fragments in Forested Upland and Wetland Soils

  2002cited by this paper
• Polyphosphate Kinase from Activated Sludge Performing Enhanced Biological Phosphorus Removal

  2002cited by this paper
• Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern.

  2002cited by this paper
• Biological N2-fixation on Mangrove Pneumatophores: Preliminary Observations and Perspectives

  2002cited by this paper
• Phylogenetic Analysis Reveals Multiple Lateral Transfers of Adenosine-5′-Phosphosulfate Reductase Genes among Sulfate-Reducing Microorganisms

  2002cited by this paper
• Production of N2 through Anaerobic Ammonium Oxidation Coupled to Nitrate Reduction in Marine Sediments

  2002cited by this paper
• Linking Soil Microbial Communities and Ecosystem Functioning

  2002cited by this paper
• The role of sediment microorganisms in the productivity, conservation, and rehabilitation of mangrove ecosystems: an overview

  2001influential reference
• Relevance of mangroves for the production and deposition of organic matter along tropical continental margins

  2001cited by this paper
• Community Structure of Denitrifiers, Bacteria, and Archaea along Redox Gradients in Pacific Northwest Marine Sediments by Terminal Restriction Fragment Length Polymorphism Analysis of Amplified Nitrite Reductase (nirS) and 16S rRNA Genes

  2001cited by this paper
• Novel Genes Coding for Lithotrophic Sulfur Oxidation of Paracoccus pantotrophus GB17

  2000cited by this paper
• Nitrite Reductase Genes (nirK andnirS) as Functional Markers To Investigate Diversity of Denitrifying Bacteria in Pacific Northwest Marine Sediment Communities

  2000cited by this paper
• The global carbon cycle: a test of our knowledge of earth as a system.

  2000cited by this paper
• Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: A different perspective

  1999cited by this paper
• Diversity of Nitrous Oxide Reductase (nosZ) Genes in Continental Shelf Sediments

  1999cited by this paper
• Interactions Underground: Soil biodiversity, mutualism, and ecosystem processes

  1999cited by this paper
• Low-Concentration Kinetics of Atmospheric CH4 Oxidation in Soil and Mechanism of NH4+ Inhibition

  1998cited by this paper
• Different kinds of mangrove forests provide different goods and services

  1998cited by this paper
• Microbial Diversity and Ecosystem Function

  1998cited by this paper
• Physiology and genetics of sulfur-oxidizing bacteria.

  1998cited by this paper
• Response of microbial processes and fungal community structure to vegetation management in mixedwood forest soils

  1998cited by this paper
• Compositional and functional shifts in microbial communities due to soil warming

  1997cited by this paper
• Sediment bacteria: who's there, what are they doing, and what's new?

  1997cited by this paper
• PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR

  1996cited by this paper
• DNA recovery from soils of diverse composition

  1996cited by this paper
• Mineralization of inositol hexaphosphate in aerobic and anaerobic marine sediments: Implications for the phosphorus cycle

  1995cited by this paper
• The global carbon cycle: a viewpoint on the missing sink

  1994cited by this paper
• On the presence of organic phosphate in some Camargue sediments: evidence for the importance of phytate

  1993cited by this paper

• Assessment of bioavailability of polyphosphates and impacts on plant phosphorus uptake and phenotypes.

  2025cites this paper
• Rhizosphere bacterial community structure and nutrient cycling genes jointly drive the soil multifunctionality of Phoebe bournei young plantations under potassium fertilizer

  2025cites this paper
• Diversity and Morphological Characterization of Fungi in the Mangrove Forest of Belawan, North Sumatra

  2025cites this paper
• Unveiling the role of bacterial communities in carbon fixation of mangrove wetlands: insights into the redox potential and biogeochemical interactions

  2025cites this paper
• Geno-pheno characterization of crop rhizospheres: an integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture

  2025cites this paper
• The Impact of Flooding on Soil Microbial Communities and Their Functions: A Review

  2025cites this paper
• Shifts in Soil Fungal Community and Trophic Modes During Mangrove Ecosystem Restoration

  2025cites this paper
• Bacterial Community Structure and Environmental Driving Factors in the Surface Sediments of Six Mangrove Sites from Guangxi, China

  2024cites this paper
• Homologous recombination and gene‐specific selection co‐shape the vertical nucleotide diversity of mangrove sediment microbial populations

  2024cites this paper
• The diversity, drivers, consequences and management of plant invasions in the mangrove ecosystems.

  2024cites this paper
• Microbially-driven phosphorus cycling and its coupling mechanisms with nitrogen cycling in mangrove sediments.

  2024cites this paper
• High-throughput analysis using 16S rRNA sequencing of bacterial communities associated in selected mangrove species from Bayug Island, Iligan City, Philippines

  2024cites this paper
• Diversity and assembly of active bacteria and their potential function along soil aggregates in a paddy field.

  2023cites this paper
• Denitrification in hypersaline and coastal environments

  2023cites this paper
• OYSTER BIO DEPOSITION ENHANCED THE FUNCTIONAL POTENTIAL OF LABILE AND RECALCITRANT CARBON IN SHENZHEN BAY’S SEDIMENTS

  2023cites this paper
• Comparative Diversity and Functional Traits of Fungal Endophytes in Response to Elevated Mineral Content in a Mangrove Ecosystem

  2023cites this paper
• Community structures of mangrove endophytic and rhizosphere bacteria in Zhangjiangkou National Mangrove Nature Reserve

  2023cites this paper
• Mangroves: A hotspot for novel bacterial and archaeal diversity

  2023cites this paper
• Soil organic carbon storages and bacterial communities along a restored mangrove soil chronosequence in the Jiulong River Estuary: From tidal flats to mangrove afforestation

  2022cites this paper
• Coastal ecological impacts from pumice rafts

  2022cites this paper
• Spartina alterniflora Invaded Coastal Wetlands by Raising Soil Sulfur Contents: A Meta-Analysis

  2022cites this paper
• Pontibacter qinzhouensis sp. nov., isolated from rhizosphere soil of a mangrove plant Rhizophora stylosa

  2022cites this paper
• Microbial functional assemblages predicted by the FAPROTAX analysis are impacted by physicochemical properties, but C, N and S cycling genes are not in mangrove soil in the Beibu Gulf, China

  2022cites this paper
• Ecological Role of Bacteria Involved in the Biogeochemical Cycles of Mangroves Based on Functional Genes Detected through GeoChip 5.0

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• Microfluidics as an Emerging Platform for Exploring Soil Environmental Processes: A Critical Review.

  2022cites this paper
• Biotechnological potential of fungi from a mangrove ecosystem: Enzymes, salt tolerance and decolorization of a real textile effluent.

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• Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion

  2021cites this paper
• Characteristics of Microbial Community and Function With the Succession of Mangroves

  2021cites this paper
• Employing gene chip technology for monitoring and assessing soil heavy metal pollution

  2021cites this paper
• Edaphic variables are better indicators of soil microbial functional structure than plant-related ones in subtropical broad-leaved forests.

  2021cites this paper
• Desulfobacterales stimulates nitrate reduction in the mangrove ecosystem of a subtropical gulf.

  2021cites this paper
• Soil aggregate size-dependent relationships between microbial functional diversity and multifunctionality

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  2020cites this paper
• Effects of mixed coniferous and broad-leaved litter on bacterial and fungal nitrogen metabolism pathway during litter decomposition

  2020cites this paper
• Salinity controls soil microbial community structure and function in coastal estuarine wetlands.

  2020cites this paper
• Nitrogen Cycling and Mass Balance in the World’s Mangrove Forests

  2020cites this paper
• Mangrove plants improve predominant microbiota in constructed wetlands for wastewater treatment

  2020cites this paper
• Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds

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• Microbially-driven sulfur cycling microbial communities in different mangrove sediments.

  2020cites this paper
• Molecular and culture-based surveys of metabolically active hydrocarbon-degrading archaeal communities in Sundarban mangrove sediments.

  2020cites this paper
• Microbial functional diversity: From concepts to applications

  2019cites this paper
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  2019cites this paper
• Factors driving the distribution and role of AOA and AOB in Phragmites communis rhizosphere in riparian zone

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• Impacting Microbial Communities and Absorbing Pollutants by Canna Indica and Cyperus Alternifolius in a Full-Scale Constructed Wetland System

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• Bacterial community diversity and dynamics of Dongzhai harbor mangrove soils in China.

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• The Responses of Marine Microorganisms, Communities and Ecofunctions to Environmental Gradients

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• Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China

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• Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing

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  2017cites this paper
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• Microbial Functional Diversity and the Associated Biogeochemical Interactions Across Miami-Dade County, Florida Soils

  2016cites this paper
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  2016cites this paper
• A comprehensive insight into functional profiles of free-living microbial community responses to a toxic Akashiwo sanguinea bloom

  2016cites this paper
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  2016cites this paper
• Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem

  2016cites this paper
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  2015cites this paper
• Analyses of the influencing factors of soil microbial functional gene diversity in tropical rainforest based on GeoChip 5.0

  2015cites this paper
• Effects of intermediate metabolite carboxylic acids of TCA cycle on Microcystis with overproduction of phycocyanin

  2015influential citation
• Diversity and N-acyl-homoserine lactone production by Gammaproteobacteria associated with Avicennia marina rhizosphere of South Indian mangroves.

  2015cites this paper
• Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)

  2015cites this paper
• Available nitrogen is the key factor influencing soil microbial functional gene diversity in tropical rainforest

  2015cites this paper
• Phenology and allocation of belowground plant carbon at local to global scales

  2015cites this paper
• Diversity of endophytic and rhizoplane bacterial communities associated with exotic Spartina alterniflora and native mangrove using Illumina amplicon sequencing.

  2015cites this paper
• Determination of the bacterial diversity of a natural freshwater wetland impacted by acid mine drainage.

  2015cites this paper
• Microbial community functional structure in response to micro-aerobic conditions in sulfate-reducing sulfur-producing bioreactor.

  2014cites this paper
• Functional gene diversity of oolitic sands from Great Bahama Bank

  2014influential citation
• Chapter 1 - Applications of Functional Gene Microarrays for Profiling Microbial Communities

  2014cites this paper
• GeoChip-based analysis of the microbial community functional structures in simultaneous desulfurization and denitrification process.

  2014cites this paper
• Crenarchaeal heterotrophy in salt marsh sediments

  2014cites this paper
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  2014cites this paper
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  2013cites this paper
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  2013cites this paper
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  2012influential citation
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  2012cites this paper